Wall clock time and date at job start Tue Mar 31 2020 17:36:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47415 * 2 1 4 4 C 1.50693 * 109.47233 * 240.00169 * 2 1 3 5 5 H 1.08007 * 119.99710 * 274.76624 * 4 2 1 6 6 C 1.37880 * 120.00454 * 94.76271 * 4 2 1 7 7 N 1.31509 * 120.00347 * 179.41936 * 6 4 2 8 8 Si 1.86794 * 119.99626 * 359.42348 * 6 4 2 9 9 H 1.48502 * 109.47354 * 88.20319 * 8 6 4 10 10 H 1.48498 * 109.47220 * 208.20767 * 8 6 4 11 11 H 1.48506 * 109.47363 * 328.20343 * 8 6 4 12 12 C 1.50702 * 109.46899 * 120.00086 * 2 1 3 13 13 O 1.21286 * 119.99779 * 120.00197 * 12 2 1 14 14 N 1.34779 * 120.00328 * 299.99624 * 12 2 1 15 15 C 1.46497 * 119.99956 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.46883 * 184.66771 * 15 14 12 17 17 H 1.09003 * 109.46828 * 296.77392 * 16 15 14 18 18 C 1.50690 * 109.47225 * 176.76990 * 16 15 14 19 19 C 1.38292 * 119.92375 * 96.58087 * 18 16 15 20 20 C 1.38107 * 120.07118 * 180.02562 * 19 18 16 21 21 C 1.38908 * 119.92953 * 359.97438 * 20 19 18 22 22 N 1.39678 * 120.07335 * 179.97438 * 21 20 19 23 23 C 1.46491 * 119.99918 * 0.02562 * 22 21 20 24 24 C 1.46495 * 119.99646 * 179.72666 * 22 21 20 25 25 C 1.38913 * 119.84973 * 0.25870 * 21 20 19 26 26 C 1.38103 * 119.92133 * 359.48823 * 25 21 20 27 27 N 1.46901 * 109.47092 * 56.77008 * 16 15 14 28 28 C 1.46902 * 110.99919 * 35.77334 * 27 16 15 29 29 C 1.46901 * 111.00102 * 159.72733 * 27 16 15 30 30 H 1.09005 * 109.47041 * 305.03188 * 1 2 3 31 31 H 1.09001 * 109.47293 * 65.02796 * 1 2 3 32 32 H 1.08995 * 109.47658 * 185.03121 * 1 2 3 33 33 H 0.97001 * 119.99923 * 180.02562 * 7 6 4 34 34 H 0.96996 * 119.99334 * 0.02562 * 14 12 2 35 35 H 1.08994 * 109.46995 * 64.66923 * 15 14 12 36 36 H 1.08998 * 109.47314 * 304.66758 * 15 14 12 37 37 H 1.07998 * 119.96370 * 359.97438 * 19 18 16 38 38 H 1.08003 * 120.03194 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46950 * 179.72492 * 23 22 21 40 40 H 1.09001 * 109.47306 * 299.71679 * 23 22 21 41 41 H 1.08997 * 109.47399 * 59.72155 * 23 22 21 42 42 H 1.09000 * 109.47387 * 270.27932 * 24 22 21 43 43 H 1.09001 * 109.47469 * 30.27441 * 24 22 21 44 44 H 1.08993 * 109.47292 * 150.27668 * 24 22 21 45 45 H 1.07997 * 120.03580 * 179.72109 * 25 21 20 46 46 H 1.08007 * 119.96219 * 180.25436 * 26 25 21 47 47 H 1.08999 * 109.47263 * 32.58128 * 28 27 16 48 48 H 1.09008 * 109.47167 * 152.57842 * 28 27 16 49 49 H 1.08998 * 109.47568 * 272.57912 * 28 27 16 50 50 H 1.08996 * 109.47080 * 50.70444 * 29 27 16 51 51 H 1.08997 * 109.47219 * 170.71104 * 29 27 16 52 52 H 1.09005 * 109.47026 * 290.70916 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1390 -1.7851 -1.2277 6 6 2.3556 0.0117 -2.3597 7 7 2.8048 -0.6071 -3.4296 8 14 2.1556 1.8689 -2.3697 9 1 3.3992 2.5034 -1.8638 10 1 1.8929 2.3309 -3.7563 11 1 1.0156 2.2488 -1.4971 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9404 3.6507 16 6 1.5919 -0.2901 4.8973 17 1 1.9314 0.7432 4.9686 18 6 2.0314 -1.0492 6.1226 19 6 3.1157 -0.6050 6.8572 20 6 3.5214 -1.2986 7.9804 21 6 2.8389 -2.4432 8.3724 22 7 3.2471 -3.1473 9.5076 23 6 4.3957 -2.6785 10.2865 24 6 2.5224 -4.3508 9.9228 25 6 1.7532 -2.8893 7.6294 26 6 1.3495 -2.1880 6.5103 27 7 0.1261 -0.3185 4.8033 28 6 -0.3358 -1.5505 4.1500 29 6 -0.4895 -0.1624 6.1280 30 1 -0.3633 0.5899 0.8415 31 1 -0.3634 0.4339 -0.9316 32 1 -0.3634 -1.0236 0.0901 33 1 3.0326 -0.0991 -4.2239 34 1 1.1488 0.5385 2.5436 35 1 3.2822 -0.8681 3.6933 36 1 1.9024 -1.9894 3.6101 37 1 3.6461 0.2847 6.5517 38 1 4.3686 -0.9514 8.5534 39 1 4.5591 -3.3476 11.1314 40 1 5.2836 -2.6682 9.6544 41 1 4.1992 -1.6711 10.6534 42 1 1.7168 -4.0734 10.6027 43 1 2.1036 -4.8437 9.0454 44 1 3.2073 -5.0307 10.4293 45 1 1.2232 -3.7813 7.9289 46 1 0.5029 -2.5320 5.9345 47 1 0.3442 -2.3672 4.3923 48 1 -1.3378 -1.7952 4.5028 49 1 -0.3567 -1.4034 3.0702 50 1 -0.0598 0.7054 6.6283 51 1 -1.5643 -0.0215 6.0148 52 1 -0.3008 -1.0555 6.7238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891245844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:53 Heat of formation + Delta-G solvation = 25.744650 kcal Electronic energy + Delta-G solvation = -29365.692563 eV Core-core repulsion = 25559.332869 eV Total energy + Delta-G solvation = -3806.359695 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.62483 -38.99517 -38.04869 -35.82303 -33.72841 -33.53308 -31.58679 -31.20251 -30.71901 -28.57631 -28.37085 -27.52790 -25.14623 -24.92372 -24.35283 -22.56925 -22.19447 -21.15415 -20.01205 -19.14064 -17.63249 -16.93955 -16.51754 -16.06422 -15.91109 -15.44759 -15.39673 -15.19183 -14.78612 -14.60586 -14.15147 -13.99434 -13.88538 -13.63914 -13.44789 -13.13347 -12.98625 -12.80734 -12.52611 -12.45636 -12.33707 -12.26352 -12.12506 -12.01266 -11.75162 -11.63832 -11.44176 -11.27479 -11.13316 -11.03021 -10.84441 -10.63963 -10.18372 -9.88823 -9.72117 -9.05404 -9.04469 -8.58103 -8.47797 -8.36802 -8.22393 -7.48674 -5.98592 -3.97360 1.27862 1.36385 2.79216 3.30857 3.38871 3.39856 3.59278 3.78479 3.90115 4.10832 4.45888 4.55932 4.58574 4.75843 4.80470 4.83472 4.92121 4.95167 5.15505 5.18756 5.22004 5.26756 5.27832 5.29271 5.33405 5.38280 5.41443 5.53331 5.56818 5.61670 5.81741 5.85190 5.91970 5.99213 6.06839 6.14655 6.18194 6.25203 6.27280 6.50882 6.54497 6.63733 6.64799 6.92924 6.95015 6.96279 6.99698 7.19177 7.21977 7.28548 7.66109 8.34279 8.65343 9.17275 9.32043 9.61569 11.14869 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.002451 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.155439 B =11419.096189 C =11812.147794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.004 4.004 3 H 0.052 0.948 4 C -0.491 4.491 5 H 0.084 0.916 6 C 0.069 3.931 7 N -0.898 5.898 8 Si 0.871 3.129 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.262 1.262 12 C 0.518 3.482 13 O -0.534 6.534 14 N -0.740 5.740 15 C 0.125 3.875 16 C 0.118 3.882 17 H 0.094 0.906 18 C -0.162 4.162 19 C -0.058 4.058 20 C -0.194 4.194 21 C 0.212 3.788 22 N -0.641 5.641 23 C 0.097 3.903 24 C 0.094 3.906 25 C -0.197 4.197 26 C -0.071 4.071 27 N -0.529 5.529 28 C 0.006 3.994 29 C 0.016 3.984 30 H 0.029 0.971 31 H 0.054 0.946 32 H 0.047 0.953 33 H 0.263 0.737 34 H 0.400 0.600 35 H 0.063 0.937 36 H 0.067 0.933 37 H 0.122 0.878 38 H 0.119 0.881 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.046 0.954 43 H 0.068 0.932 44 H 0.065 0.935 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.045 0.955 48 H 0.058 0.942 49 H 0.080 0.920 50 H 0.064 0.936 51 H 0.063 0.937 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.705 -0.970 30.578 30.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.026 4.026 3 H 0.070 0.930 4 C -0.530 4.530 5 H 0.103 0.897 6 C -0.132 4.132 7 N -0.536 5.536 8 Si 0.698 3.302 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.187 1.187 12 C 0.306 3.694 13 O -0.409 6.409 14 N -0.395 5.395 15 C 0.000 4.000 16 C 0.009 3.991 17 H 0.112 0.888 18 C -0.166 4.166 19 C -0.078 4.078 20 C -0.217 4.217 21 C 0.111 3.889 22 N -0.353 5.353 23 C -0.046 4.046 24 C -0.050 4.050 25 C -0.219 4.219 26 C -0.090 4.090 27 N -0.252 5.252 28 C -0.141 4.141 29 C -0.132 4.132 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.073 0.927 34 H 0.235 0.765 35 H 0.082 0.918 36 H 0.085 0.915 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.072 0.928 41 H 0.071 0.929 42 H 0.064 0.936 43 H 0.087 0.913 44 H 0.084 0.916 45 H 0.138 0.862 46 H 0.147 0.853 47 H 0.063 0.937 48 H 0.077 0.923 49 H 0.099 0.901 50 H 0.083 0.917 51 H 0.082 0.918 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.218 -1.390 30.137 30.340 hybrid contribution 0.056 0.645 0.598 0.881 sum -3.162 -0.745 30.735 30.906 Atomic orbital electron populations 1.21939 0.96841 1.00405 0.99873 1.19302 0.93968 0.96870 0.92418 0.92990 1.20761 1.42563 0.96218 0.93423 0.89750 1.25032 0.94631 0.97980 0.95591 1.69890 1.44443 1.35789 1.03477 0.86958 0.79108 0.86667 0.77421 1.20299 1.21373 1.18663 1.21685 0.79068 0.84582 0.84035 1.90582 1.37157 1.26517 1.86634 1.46262 1.55327 1.32874 1.05075 1.21372 0.98355 0.96877 0.83386 1.20967 0.87616 0.99172 0.91308 0.88802 1.20131 0.98843 0.98200 0.99405 1.20773 0.94967 0.98645 0.93378 1.20592 1.03173 0.97331 1.00579 1.17821 0.93201 0.91266 0.86598 1.46304 1.33294 1.28340 1.27365 1.21579 0.88036 0.99789 0.95217 1.21646 0.96527 0.86526 1.00255 1.20623 0.99872 1.02654 0.98753 1.21084 0.98579 0.93655 0.95658 1.62444 1.05356 1.36949 1.20486 1.22771 0.99187 0.90781 1.01405 1.22679 0.99329 1.01255 0.89977 0.95186 0.92652 0.93409 0.92680 0.76515 0.91837 0.91513 0.85962 0.86264 0.91025 0.92779 0.92874 0.93556 0.91292 0.91621 0.86206 0.85346 0.93677 0.92328 0.90139 0.91723 0.91794 0.94048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.69 8.92 37.15 0.33 -2.36 16 2 C 0.00 -0.09 2.21 -92.93 -0.21 -0.29 16 3 H 0.05 1.20 5.50 -51.93 -0.29 0.92 16 4 C -0.49 -14.37 8.37 -34.44 -0.29 -14.66 16 5 H 0.08 2.81 7.60 -52.48 -0.40 2.41 16 6 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 7 N -0.90 -28.17 13.96 55.43 0.77 -27.40 16 8 Si 0.87 21.31 26.63 -169.99 -4.53 16.78 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.26 -5.90 6.64 56.52 0.38 -5.53 16 12 C 0.52 11.66 7.15 -10.98 -0.08 11.58 16 13 O -0.53 -14.32 15.76 5.55 0.09 -14.23 16 14 N -0.74 -12.56 4.18 -60.29 -0.25 -12.81 16 15 C 0.12 1.87 4.45 -4.04 -0.02 1.85 16 16 C 0.12 1.37 2.57 -68.87 -0.18 1.20 16 17 H 0.09 1.04 8.04 -51.93 -0.42 0.63 16 18 C -0.16 -1.78 4.01 -104.59 -0.42 -2.20 16 19 C -0.06 -0.61 9.66 -39.61 -0.38 -0.99 16 20 C -0.19 -1.94 9.31 -39.38 -0.37 -2.31 16 21 C 0.21 2.14 6.55 -83.79 -0.55 1.59 16 22 N -0.64 -5.20 3.41 -187.56 -0.64 -5.84 16 23 C 0.10 0.57 9.40 59.84 0.56 1.13 16 24 C 0.09 0.56 10.16 59.84 0.61 1.17 16 25 C -0.20 -2.00 9.21 -39.38 -0.36 -2.36 16 26 C -0.07 -0.77 6.49 -39.61 -0.26 -1.02 16 27 N -0.53 -5.93 4.82 -244.58 -1.18 -7.10 16 28 C 0.01 0.07 7.56 60.07 0.45 0.53 16 29 C 0.02 0.15 8.43 60.07 0.51 0.65 16 30 H 0.03 0.50 7.71 -51.93 -0.40 0.10 16 31 H 0.05 1.15 7.67 -51.93 -0.40 0.75 16 32 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.40 6.01 7.80 -40.82 -0.32 5.70 16 35 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 1.09 6.20 -51.93 -0.32 0.77 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.00 6.73 -52.48 -0.35 0.65 16 39 H 0.07 0.29 7.79 -51.93 -0.40 -0.12 16 40 H 0.05 0.32 7.96 -51.93 -0.41 -0.09 16 41 H 0.05 0.30 7.94 -51.93 -0.41 -0.12 16 42 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 43 H 0.07 0.42 6.19 -51.93 -0.32 0.09 16 44 H 0.07 0.29 7.92 -51.93 -0.41 -0.12 16 45 H 0.12 1.03 6.14 -52.49 -0.32 0.71 16 46 H 0.13 1.34 4.18 -52.48 -0.22 1.12 16 47 H 0.04 0.54 4.05 -51.93 -0.21 0.33 16 48 H 0.06 0.59 7.77 -51.92 -0.40 0.18 16 49 H 0.08 1.11 7.18 -51.93 -0.37 0.74 16 50 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 51 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 52 H 0.04 0.39 4.71 -51.93 -0.24 0.15 16 LS Contribution 395.62 15.07 5.96 5.96 Total: -1.00 -34.72 395.62 -8.84 -43.56 By element: Atomic # 1 Polarization: 13.99 SS G_CDS: -8.32 Total: 5.66 kcal Atomic # 6 Polarization: -3.84 SS G_CDS: -0.74 Total: -4.58 kcal Atomic # 7 Polarization: -51.86 SS G_CDS: -1.30 Total: -53.16 kcal Atomic # 8 Polarization: -14.32 SS G_CDS: 0.09 Total: -14.23 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.53 Total: 16.78 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.72 -8.84 -43.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891245844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.308 kcal (2) G-P(sol) polarization free energy of solvation -34.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds