Wall clock time and date at job start Tue Mar 31 2020 17:36:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08998 * 109.47415 * 2 1 4 4 C 1.50693 * 109.47233 * 240.00169 * 2 1 3 5 5 H 1.08007 * 119.99710 * 274.76624 * 4 2 1 6 6 C 1.37880 * 120.00454 * 94.76271 * 4 2 1 7 7 N 1.31509 * 120.00347 * 179.41936 * 6 4 2 8 8 Si 1.86794 * 119.99626 * 359.42348 * 6 4 2 9 9 H 1.48502 * 109.47354 * 88.20319 * 8 6 4 10 10 H 1.48498 * 109.47220 * 208.20767 * 8 6 4 11 11 H 1.48506 * 109.47363 * 328.20343 * 8 6 4 12 12 C 1.50702 * 109.46899 * 120.00086 * 2 1 3 13 13 O 1.21286 * 119.99779 * 120.00197 * 12 2 1 14 14 N 1.34779 * 120.00328 * 299.99624 * 12 2 1 15 15 C 1.46497 * 119.99956 * 180.02562 * 14 12 2 16 16 C 1.53004 * 109.46883 * 184.66771 * 15 14 12 17 17 H 1.09003 * 109.46828 * 296.77392 * 16 15 14 18 18 C 1.50690 * 109.47225 * 176.76990 * 16 15 14 19 19 C 1.38292 * 119.92375 * 96.58087 * 18 16 15 20 20 C 1.38107 * 120.07118 * 180.02562 * 19 18 16 21 21 C 1.38908 * 119.92953 * 359.97438 * 20 19 18 22 22 N 1.39678 * 120.07335 * 179.97438 * 21 20 19 23 23 C 1.46491 * 119.99918 * 0.02562 * 22 21 20 24 24 C 1.46495 * 119.99646 * 179.72666 * 22 21 20 25 25 C 1.38913 * 119.84973 * 0.25870 * 21 20 19 26 26 C 1.38103 * 119.92133 * 359.48823 * 25 21 20 27 27 N 1.46901 * 109.47092 * 56.77008 * 16 15 14 28 28 C 1.46902 * 110.99919 * 35.77334 * 27 16 15 29 29 C 1.46901 * 111.00102 * 159.72733 * 27 16 15 30 30 H 1.09005 * 109.47041 * 305.03188 * 1 2 3 31 31 H 1.09001 * 109.47293 * 65.02796 * 1 2 3 32 32 H 1.08995 * 109.47658 * 185.03121 * 1 2 3 33 33 H 0.97001 * 119.99923 * 180.02562 * 7 6 4 34 34 H 0.96996 * 119.99334 * 0.02562 * 14 12 2 35 35 H 1.08994 * 109.46995 * 64.66923 * 15 14 12 36 36 H 1.08998 * 109.47314 * 304.66758 * 15 14 12 37 37 H 1.07998 * 119.96370 * 359.97438 * 19 18 16 38 38 H 1.08003 * 120.03194 * 179.97438 * 20 19 18 39 39 H 1.09005 * 109.46950 * 179.72492 * 23 22 21 40 40 H 1.09001 * 109.47306 * 299.71679 * 23 22 21 41 41 H 1.08997 * 109.47399 * 59.72155 * 23 22 21 42 42 H 1.09000 * 109.47387 * 270.27932 * 24 22 21 43 43 H 1.09001 * 109.47469 * 30.27441 * 24 22 21 44 44 H 1.08993 * 109.47292 * 150.27668 * 24 22 21 45 45 H 1.07997 * 120.03580 * 179.72109 * 25 21 20 46 46 H 1.08007 * 119.96219 * 180.25436 * 26 25 21 47 47 H 1.08999 * 109.47263 * 32.58128 * 28 27 16 48 48 H 1.09008 * 109.47167 * 152.57842 * 28 27 16 49 49 H 1.08998 * 109.47568 * 272.57912 * 28 27 16 50 50 H 1.08996 * 109.47080 * 50.70444 * 29 27 16 51 51 H 1.08997 * 109.47219 * 170.71104 * 29 27 16 52 52 H 1.09005 * 109.47026 * 290.70916 * 29 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2304 5 1 2.1390 -1.7851 -1.2277 6 6 2.3556 0.0117 -2.3597 7 7 2.8048 -0.6071 -3.4296 8 14 2.1556 1.8689 -2.3697 9 1 3.3992 2.5034 -1.8638 10 1 1.8929 2.3309 -3.7563 11 1 1.0156 2.2488 -1.4971 12 6 2.0322 -0.7104 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7067 -0.2500 2.4546 15 6 2.1955 -0.9404 3.6507 16 6 1.5919 -0.2901 4.8973 17 1 1.9314 0.7432 4.9686 18 6 2.0314 -1.0492 6.1226 19 6 3.1157 -0.6050 6.8572 20 6 3.5214 -1.2986 7.9804 21 6 2.8389 -2.4432 8.3724 22 7 3.2471 -3.1473 9.5076 23 6 4.3957 -2.6785 10.2865 24 6 2.5224 -4.3508 9.9228 25 6 1.7532 -2.8893 7.6294 26 6 1.3495 -2.1880 6.5103 27 7 0.1261 -0.3185 4.8033 28 6 -0.3358 -1.5505 4.1500 29 6 -0.4895 -0.1624 6.1280 30 1 -0.3633 0.5899 0.8415 31 1 -0.3634 0.4339 -0.9316 32 1 -0.3634 -1.0236 0.0901 33 1 3.0326 -0.0991 -4.2239 34 1 1.1488 0.5385 2.5436 35 1 3.2822 -0.8681 3.6933 36 1 1.9024 -1.9894 3.6101 37 1 3.6461 0.2847 6.5517 38 1 4.3686 -0.9514 8.5534 39 1 4.5591 -3.3476 11.1314 40 1 5.2836 -2.6682 9.6544 41 1 4.1992 -1.6711 10.6534 42 1 1.7168 -4.0734 10.6027 43 1 2.1036 -4.8437 9.0454 44 1 3.2073 -5.0307 10.4293 45 1 1.2232 -3.7813 7.9289 46 1 0.5029 -2.5320 5.9345 47 1 0.3442 -2.3672 4.3923 48 1 -1.3378 -1.7952 4.5028 49 1 -0.3567 -1.4034 3.0702 50 1 -0.0598 0.7054 6.6283 51 1 -1.5643 -0.0215 6.0148 52 1 -0.3008 -1.0555 6.7238 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891245844.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:52 Heat of formation + Delta-G solvation = 1.007004 kcal Electronic energy + Delta-G solvation = -29366.765268 eV Core-core repulsion = 25559.332869 eV Total energy + Delta-G solvation = -3807.432399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -41.52681 -40.41298 -39.11044 -36.56741 -35.59029 -35.17989 -33.31360 -32.25313 -31.61032 -29.47786 -29.02029 -28.36871 -27.16983 -25.93629 -25.16883 -23.87403 -23.29297 -22.01781 -21.11470 -20.67172 -19.06754 -18.37296 -17.67432 -17.37683 -17.09390 -16.46982 -16.23334 -15.97300 -15.92667 -15.81591 -15.64857 -15.37256 -14.86427 -14.60725 -14.52983 -14.40057 -14.06013 -13.92747 -13.78407 -13.47170 -13.35811 -13.05059 -13.03156 -12.98914 -12.92885 -12.76379 -12.62477 -12.56137 -12.45043 -12.33739 -12.15133 -12.05510 -11.70913 -11.60826 -11.17646 -10.73388 -10.61876 -10.35818 -9.87966 -9.81811 -9.16527 -8.23612 -8.16748 -6.29982 0.51185 0.57799 1.39469 1.41683 1.53322 1.98223 2.23941 2.39253 2.43177 2.89374 3.08604 3.15322 3.84183 3.88104 3.92309 4.04783 4.17675 4.21672 4.29091 4.35216 4.39710 4.44827 4.46891 4.48773 4.52178 4.61000 4.69732 4.74499 4.77105 4.79715 4.80876 4.84688 4.86494 4.88316 4.94549 5.03362 5.09982 5.15657 5.18246 5.20802 5.36132 5.44234 5.55964 5.63047 5.63676 5.72130 5.91198 6.07156 6.16363 6.30351 6.34660 6.52868 6.72881 6.94606 7.31601 7.61986 8.94571 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021318 B = 0.002451 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.155439 B =11419.096189 C =11812.147794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.007 4.007 3 H 0.069 0.931 4 C -0.503 4.503 5 H 0.020 0.980 6 C 0.002 3.998 7 N -0.955 5.955 8 Si 0.948 3.052 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.221 1.221 12 C 0.519 3.481 13 O -0.590 6.590 14 N -0.712 5.712 15 C 0.128 3.872 16 C 0.132 3.868 17 H 0.106 0.894 18 C -0.176 4.176 19 C -0.063 4.063 20 C -0.204 4.204 21 C 0.206 3.794 22 N -0.645 5.645 23 C 0.092 3.908 24 C 0.088 3.912 25 C -0.208 4.208 26 C -0.076 4.076 27 N -0.531 5.531 28 C 0.009 3.991 29 C 0.019 3.981 30 H 0.076 0.924 31 H 0.053 0.947 32 H 0.038 0.962 33 H 0.266 0.734 34 H 0.415 0.585 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.135 0.865 38 H 0.133 0.867 39 H 0.092 0.908 40 H 0.051 0.949 41 H 0.056 0.944 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.083 0.917 45 H 0.131 0.869 46 H 0.128 0.872 47 H 0.037 0.963 48 H 0.076 0.924 49 H 0.058 0.942 50 H 0.069 0.931 51 H 0.074 0.926 52 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.924 1.650 33.653 34.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.029 4.029 3 H 0.087 0.913 4 C -0.542 4.542 5 H 0.038 0.962 6 C -0.194 4.194 7 N -0.595 5.595 8 Si 0.770 3.230 9 H -0.195 1.195 10 H -0.212 1.212 11 H -0.143 1.143 12 C 0.307 3.693 13 O -0.469 6.469 14 N -0.366 5.366 15 C 0.003 3.997 16 C 0.023 3.977 17 H 0.124 0.876 18 C -0.180 4.180 19 C -0.082 4.082 20 C -0.227 4.227 21 C 0.103 3.897 22 N -0.357 5.357 23 C -0.051 4.051 24 C -0.054 4.054 25 C -0.231 4.231 26 C -0.094 4.094 27 N -0.254 5.254 28 C -0.139 4.139 29 C -0.128 4.128 30 H 0.095 0.905 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.253 0.747 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.152 0.848 38 H 0.151 0.849 39 H 0.110 0.890 40 H 0.070 0.930 41 H 0.075 0.925 42 H 0.072 0.928 43 H 0.083 0.917 44 H 0.101 0.899 45 H 0.148 0.852 46 H 0.146 0.854 47 H 0.056 0.944 48 H 0.095 0.905 49 H 0.076 0.924 50 H 0.087 0.913 51 H 0.092 0.908 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -4.477 1.247 33.301 33.624 hybrid contribution 0.479 -0.347 -0.239 0.638 sum -3.997 0.901 33.062 33.315 Atomic orbital electron populations 1.21806 0.93748 1.00898 1.01768 1.19290 0.96267 0.96828 0.90538 0.91273 1.20895 1.43098 0.93773 0.96389 0.96187 1.26116 0.93957 1.04711 0.94645 1.70086 1.46282 1.38554 1.04585 0.85742 0.80698 0.78248 0.78329 1.19514 1.21195 1.14300 1.21447 0.78551 0.83864 0.85444 1.90568 1.39863 1.28968 1.87521 1.45900 1.53983 1.32624 1.04069 1.21451 0.98023 0.96334 0.83856 1.20802 0.87905 0.99383 0.89569 0.87580 1.20056 0.99715 0.98730 0.99486 1.20971 0.94710 0.99111 0.93412 1.20795 1.03680 0.97436 1.00742 1.18032 0.93037 0.91427 0.87175 1.46587 1.33714 1.28554 1.26835 1.21726 0.87181 1.00567 0.95579 1.21788 0.97112 0.86136 1.00380 1.20793 1.00310 1.03139 0.98813 1.21141 0.98691 0.93719 0.95897 1.62471 1.04932 1.36394 1.21619 1.22691 1.00162 0.90898 1.00102 1.22684 0.99759 1.01442 0.88934 0.90535 0.92823 0.94324 0.92516 0.74743 0.92803 0.93044 0.84753 0.84949 0.88981 0.92998 0.92509 0.92843 0.91658 0.89869 0.85152 0.85420 0.94434 0.90542 0.92360 0.91260 0.90755 0.94035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.77 8.92 71.98 0.64 -4.13 16 2 C -0.01 -0.35 2.21 -12.29 -0.03 -0.38 16 3 H 0.07 3.00 5.50 -2.39 -0.01 2.98 16 4 C -0.50 -30.58 8.37 25.60 0.21 -30.36 16 5 H 0.02 1.42 7.60 -2.91 -0.02 1.40 16 6 C 0.00 0.10 5.47 84.66 0.46 0.56 16 7 N -0.95 -62.43 13.96 21.45 0.30 -62.13 16 8 Si 0.95 43.28 26.63 68.60 1.83 45.11 16 9 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 10 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 11 H -0.22 -8.57 6.64 99.48 0.66 -7.91 16 12 C 0.52 23.52 7.15 87.66 0.63 24.14 16 13 O -0.59 -33.13 15.76 -3.05 -0.05 -33.17 16 14 N -0.71 -23.30 4.18 -463.06 -1.94 -25.24 16 15 C 0.13 3.76 4.45 86.38 0.38 4.15 16 16 C 0.13 2.84 2.57 44.17 0.11 2.95 16 17 H 0.11 2.06 8.04 -2.39 -0.02 2.04 16 18 C -0.18 -3.65 4.01 -19.84 -0.08 -3.73 16 19 C -0.06 -1.21 9.66 22.25 0.22 -1.00 16 20 C -0.20 -3.77 9.31 22.40 0.21 -3.56 16 21 C 0.21 3.86 6.55 38.21 0.25 4.11 16 22 N -0.65 -9.31 3.41 -747.32 -2.55 -11.86 16 23 C 0.09 0.89 9.40 127.77 1.20 2.09 16 24 C 0.09 0.89 10.16 127.77 1.30 2.19 16 25 C -0.21 -4.01 9.21 22.40 0.21 -3.81 16 26 C -0.08 -1.56 6.49 22.25 0.14 -1.42 16 27 N -0.53 -10.70 4.82 -927.72 -4.47 -15.17 16 28 C 0.01 0.21 7.56 127.69 0.96 1.17 16 29 C 0.02 0.32 8.43 127.69 1.08 1.39 16 30 H 0.08 2.23 7.71 -2.38 -0.02 2.21 16 31 H 0.05 2.08 7.67 -2.39 -0.02 2.06 16 32 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.27 16.10 8.31 -92.71 -0.77 15.33 16 34 H 0.42 11.22 7.80 -92.71 -0.72 10.50 16 35 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 36 H 0.05 1.71 6.20 -2.39 -0.01 1.70 16 37 H 0.13 2.16 8.06 -2.91 -0.02 2.14 16 38 H 0.13 1.99 6.73 -2.91 -0.02 1.98 16 39 H 0.09 0.50 7.79 -2.38 -0.02 0.48 16 40 H 0.05 0.53 7.96 -2.39 -0.02 0.51 16 41 H 0.06 0.52 7.94 -2.39 -0.02 0.50 16 42 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 43 H 0.06 0.70 6.19 -2.39 -0.01 0.69 16 44 H 0.08 0.54 7.92 -2.39 -0.02 0.52 16 45 H 0.13 2.12 6.14 -2.91 -0.02 2.10 16 46 H 0.13 2.57 4.18 -2.91 -0.01 2.56 16 47 H 0.04 0.89 4.05 -2.39 -0.01 0.88 16 48 H 0.08 1.39 7.77 -2.38 -0.02 1.37 16 49 H 0.06 1.55 7.18 -2.39 -0.02 1.53 16 50 H 0.07 1.10 8.09 -2.39 -0.02 1.08 16 51 H 0.07 1.08 8.14 -2.39 -0.02 1.07 16 52 H 0.04 0.70 4.71 -2.38 -0.01 0.69 16 Total: -1.00 -80.69 395.62 1.18 -79.51 By element: Atomic # 1 Polarization: 28.41 SS G_CDS: 0.16 Total: 28.57 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: 7.90 Total: -5.62 kcal Atomic # 7 Polarization: -105.74 SS G_CDS: -8.66 Total: -114.40 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -0.05 Total: -33.17 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 1.83 Total: 45.11 kcal Total: -80.69 1.18 -79.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891245844.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.514 kcal (2) G-P(sol) polarization free energy of solvation -80.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds