Wall clock time and date at job start Tue Mar 31 2020 18:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00093 * 2 1 4 4 C 1.39675 * 120.00025 * 179.71303 * 2 1 3 5 5 C 1.38907 * 120.07691 * 179.72362 * 4 2 1 6 6 C 1.38104 * 119.92646 * 179.77449 * 5 4 2 7 7 C 1.38283 * 120.07547 * 0.50846 * 6 5 4 8 8 C 1.50698 * 119.92930 * 179.72257 * 7 6 5 9 9 H 1.08997 * 109.47295 * 170.16340 * 8 7 6 10 10 C 1.52999 * 109.47042 * 290.16833 * 8 7 6 11 11 N 1.46505 * 109.47191 * 178.77261 * 10 8 7 12 12 C 1.34774 * 120.00144 * 178.16238 * 11 10 8 13 13 O 1.21280 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99998 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47042 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99982 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99842 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47293 * 59.99962 * 20 18 16 22 22 H 1.48502 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47366 * 299.99863 * 20 18 16 24 24 N 1.46901 * 109.46724 * 50.16256 * 8 7 6 25 25 C 1.46904 * 111.00345 * 268.32564 * 24 8 7 26 26 C 1.46903 * 111.00210 * 32.28710 * 24 8 7 27 27 C 1.38291 * 120.14789 * 359.74740 * 7 6 5 28 28 C 1.38110 * 120.07340 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.46726 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46522 * 120.00784 * 1 2 3 31 31 H 1.08999 * 109.47089 * 240.00143 * 1 2 3 32 32 H 1.08994 * 109.47255 * 89.99356 * 3 2 1 33 33 H 1.08998 * 109.46679 * 209.99519 * 3 2 1 34 34 H 1.09003 * 109.46552 * 329.99179 * 3 2 1 35 35 H 1.08004 * 120.03420 * 0.02562 * 5 4 2 36 36 H 1.08002 * 119.96115 * 180.25506 * 6 5 4 37 37 H 1.09004 * 109.47258 * 298.76589 * 10 8 7 38 38 H 1.08999 * 109.47386 * 58.77237 * 10 8 7 39 39 H 0.97002 * 119.99346 * 358.15270 * 11 10 8 40 40 H 1.08996 * 109.46988 * 300.00134 * 14 12 11 41 41 H 1.08997 * 109.47154 * 59.99700 * 14 12 11 42 42 H 1.08996 * 109.47799 * 300.00201 * 15 14 12 43 43 H 1.09003 * 109.47365 * 60.00657 * 15 14 12 44 44 H 0.97006 * 120.00163 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.46682 * 52.47132 * 25 24 8 46 46 H 1.09001 * 109.47328 * 172.46936 * 25 24 8 47 47 H 1.08996 * 109.47030 * 292.47297 * 25 24 8 48 48 H 1.08997 * 109.47399 * 50.30447 * 26 24 8 49 49 H 1.08997 * 109.47205 * 170.31285 * 26 24 8 50 50 H 1.09002 * 109.46609 * 290.31100 * 26 24 8 51 51 H 1.07994 * 119.96235 * 179.97438 * 27 7 6 52 52 H 1.07994 * 120.03203 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2096 0.0061 5 6 3.5525 -1.2115 0.0003 6 6 4.2399 -2.4093 0.0110 7 6 3.5469 -3.6059 0.0169 8 6 4.3004 -4.9110 0.0222 9 1 3.6053 -5.7311 0.2020 10 6 4.9851 -5.1102 -1.3314 11 7 5.7416 -6.3647 -1.3162 12 6 6.4002 -6.7680 -2.4207 13 8 6.3664 -6.0925 -3.4274 14 6 7.1787 -8.0582 -2.4048 15 6 7.8254 -8.2805 -3.7734 16 6 8.6045 -9.5704 -3.7574 17 1 8.6356 -10.1713 -2.8606 18 6 9.2784 -9.9828 -4.8874 19 7 9.2409 -9.2509 -5.9793 20 14 10.2447 -11.5814 -4.8672 21 1 9.3283 -12.7099 -4.5640 22 1 10.8733 -11.7966 -6.1953 23 1 11.3011 -11.5082 -3.8262 24 7 5.3143 -4.8866 1.0850 25 6 6.6002 -4.3926 0.5746 26 6 4.8589 -4.0852 2.2288 27 6 2.1640 -3.6077 0.0173 28 6 1.4704 -2.4135 0.0124 29 1 -0.3632 1.0276 -0.0005 30 1 -0.3632 -0.5140 -0.8899 31 1 -0.3633 -0.5138 0.8900 32 1 2.3791 1.5835 1.0276 33 1 3.1500 1.1383 -0.5138 34 1 1.6085 2.0283 -0.5140 35 1 4.0943 -0.2772 -0.0085 36 1 5.3199 -2.4113 0.0107 37 1 4.2312 -5.1501 -2.1176 38 1 5.6641 -4.2788 -1.5209 39 1 5.7684 -6.9050 -0.5110 40 1 7.9540 -8.0053 -1.6405 41 1 6.5055 -8.8861 -2.1827 42 1 7.0499 -8.3335 -4.5375 43 1 8.4987 -7.4526 -3.9960 44 1 9.7153 -9.5409 -6.7741 45 1 6.4483 -3.4386 0.0697 46 1 7.2931 -4.2579 1.4052 47 1 7.0131 -5.1148 -0.1297 48 1 3.8595 -4.4063 2.5226 49 1 5.5450 -4.2222 3.0646 50 1 4.8341 -3.0323 1.9478 51 1 1.6259 -4.5440 0.0215 52 1 0.3904 -2.4156 0.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000891246982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:30 Heat of formation + Delta-G solvation = 15.336042 kcal Electronic energy + Delta-G solvation = -28600.345493 eV Core-core repulsion = 24793.534447 eV Total energy + Delta-G solvation = -3806.811046 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.68484 -39.21108 -38.17624 -35.94805 -33.96461 -33.36593 -31.57469 -31.18587 -30.77288 -28.66815 -28.57028 -27.56545 -25.86272 -24.69015 -24.19966 -22.62359 -21.71830 -21.10737 -20.11456 -19.44005 -17.70344 -16.79562 -16.63261 -16.19014 -15.72504 -15.54961 -15.45499 -15.26462 -15.00516 -14.68785 -14.52007 -14.33694 -13.99372 -13.85210 -13.56721 -13.17475 -13.03241 -12.86972 -12.72228 -12.51605 -12.43346 -12.19012 -12.12759 -12.04495 -11.85271 -11.66650 -11.44192 -11.28286 -11.08374 -10.89162 -10.85577 -10.57086 -9.98580 -9.87434 -9.59059 -9.12881 -9.10937 -8.93639 -8.64284 -8.40273 -8.26066 -7.54922 -5.90571 -3.94632 1.21823 1.29064 2.74219 3.36953 3.38575 3.42614 3.44218 3.48094 3.73661 3.94896 4.49031 4.52180 4.53498 4.64984 4.71892 4.73546 4.82289 4.89469 5.09030 5.09722 5.14227 5.20516 5.21837 5.24586 5.36167 5.38501 5.44132 5.46169 5.49434 5.54353 5.66514 5.76081 5.79294 5.88037 5.95562 6.02656 6.05844 6.15665 6.32829 6.35125 6.45167 6.58237 6.77870 6.87493 6.88541 6.95127 6.99227 7.14909 7.80502 7.93783 8.04840 8.13834 8.45452 8.90347 9.14326 9.68443 11.20347 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.001961 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.601615 B =14274.398679 C =14740.549416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.640 5.640 3 C 0.093 3.907 4 C 0.214 3.786 5 C -0.196 4.196 6 C -0.066 4.066 7 C -0.162 4.162 8 C 0.118 3.882 9 H 0.095 0.905 10 C 0.121 3.879 11 N -0.737 5.737 12 C 0.508 3.492 13 O -0.538 6.538 14 C -0.129 4.129 15 C 0.037 3.963 16 C -0.526 4.526 17 H 0.055 0.945 18 C 0.057 3.943 19 N -0.890 5.890 20 Si 0.893 3.107 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.277 1.277 24 N -0.531 5.531 25 C 0.002 3.998 26 C 0.021 3.979 27 C -0.057 4.057 28 C -0.195 4.195 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.066 0.934 35 H 0.121 0.879 36 H 0.125 0.875 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.404 0.596 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.023 0.977 43 H 0.023 0.977 44 H 0.261 0.739 45 H 0.033 0.967 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.065 0.935 49 H 0.063 0.937 50 H 0.038 0.962 51 H 0.123 0.877 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.849 20.362 19.172 33.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.352 5.352 3 C -0.050 4.050 4 C 0.113 3.887 5 C -0.218 4.218 6 C -0.085 4.085 7 C -0.165 4.165 8 C 0.009 3.991 9 H 0.113 0.887 10 C -0.003 4.003 11 N -0.393 5.393 12 C 0.296 3.704 13 O -0.413 6.413 14 C -0.169 4.169 15 C 0.000 4.000 16 C -0.565 4.565 17 H 0.074 0.926 18 C -0.144 4.144 19 N -0.529 5.529 20 Si 0.721 3.279 21 H -0.203 1.203 22 H -0.213 1.213 23 H -0.203 1.203 24 N -0.254 5.254 25 C -0.146 4.146 26 C -0.127 4.127 27 C -0.077 4.077 28 C -0.217 4.217 29 H 0.090 0.910 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.084 0.916 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.239 0.761 40 H 0.097 0.903 41 H 0.097 0.903 42 H 0.041 0.959 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.051 0.949 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.082 0.918 50 H 0.056 0.944 51 H 0.140 0.860 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -17.823 20.549 18.392 32.836 hybrid contribution 0.310 -0.099 0.092 0.338 sum -17.512 20.450 18.484 32.658 Atomic orbital electron populations 1.21587 0.79507 1.02325 1.01226 1.46323 1.04968 1.03209 1.80737 1.21659 0.97428 0.84860 1.01059 1.17823 0.91154 0.85622 0.94136 1.20629 0.92074 0.98437 1.10680 1.20983 0.99749 0.91521 0.96248 1.20029 0.94087 0.95033 1.07396 1.20963 0.92997 0.94424 0.90670 0.88700 1.21454 0.95485 0.87843 0.95524 1.46255 1.53070 1.24142 1.15786 1.21561 0.78562 0.88252 0.82017 1.90667 1.61720 1.56540 1.32418 1.21849 0.98717 0.92149 1.04231 1.18884 0.95621 0.96617 0.88890 1.21208 1.30932 1.06541 0.97788 0.92641 1.25028 0.96681 0.97109 0.95611 1.69989 1.42763 1.37995 1.02156 0.86653 0.80240 0.83967 0.77061 1.20271 1.21346 1.20278 1.62493 1.02850 1.52785 1.07232 1.22863 0.91228 0.99588 1.00901 1.22538 1.00863 0.96174 0.93120 1.20784 0.93208 0.97407 0.96258 1.20596 0.99467 0.90997 1.10638 0.90981 0.92768 0.92839 0.93501 0.91266 0.91574 0.86147 0.85779 0.91244 0.91593 0.76093 0.90280 0.90293 0.95891 0.95898 0.92957 0.94908 0.91702 0.89525 0.91619 0.91842 0.94385 0.85953 0.86217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.51 9.40 59.85 0.56 1.08 16 2 N -0.64 -4.82 3.41 -187.55 -0.64 -5.46 16 3 C 0.09 0.51 10.16 59.85 0.61 1.12 16 4 C 0.21 2.00 6.55 -83.79 -0.55 1.46 16 5 C -0.20 -1.87 9.21 -39.38 -0.36 -2.23 16 6 C -0.07 -0.67 6.64 -39.61 -0.26 -0.93 16 7 C -0.16 -1.63 3.56 -104.59 -0.37 -2.00 16 8 C 0.12 1.22 2.73 -68.87 -0.19 1.04 16 9 H 0.10 0.94 7.90 -51.93 -0.41 0.53 16 10 C 0.12 1.61 4.28 -4.04 -0.02 1.60 16 11 N -0.74 -10.74 3.72 -60.29 -0.22 -10.97 16 12 C 0.51 10.00 7.83 -10.99 -0.09 9.92 16 13 O -0.54 -13.03 15.98 5.56 0.09 -12.94 16 14 C -0.13 -2.69 5.64 -27.89 -0.16 -2.85 16 15 C 0.04 1.03 4.26 -27.89 -0.12 0.91 16 16 C -0.53 -15.19 9.11 -34.44 -0.31 -15.50 16 17 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 18 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -27.84 13.29 55.43 0.74 -27.11 16 20 Si 0.89 21.98 29.54 -169.99 -5.02 16.96 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 24 N -0.53 -5.33 4.88 -244.58 -1.19 -6.53 16 25 C 0.00 0.02 8.03 60.07 0.48 0.50 16 26 C 0.02 0.19 8.45 60.07 0.51 0.69 16 27 C -0.06 -0.54 9.66 -39.61 -0.38 -0.92 16 28 C -0.19 -1.78 9.31 -39.38 -0.37 -2.14 16 29 H 0.07 0.25 7.79 -51.93 -0.40 -0.15 16 30 H 0.05 0.29 7.96 -51.93 -0.41 -0.12 16 31 H 0.05 0.27 7.94 -51.93 -0.41 -0.15 16 32 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.39 6.19 -51.93 -0.32 0.07 16 34 H 0.07 0.26 7.92 -51.93 -0.41 -0.15 16 35 H 0.12 0.98 6.14 -52.48 -0.32 0.66 16 36 H 0.12 1.23 4.77 -52.49 -0.25 0.98 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.07 0.95 6.20 -51.93 -0.32 0.62 16 39 H 0.40 5.01 8.19 -40.82 -0.33 4.68 16 40 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 41 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 42 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 43 H 0.02 0.68 8.10 -51.93 -0.42 0.26 16 44 H 0.26 7.67 8.31 -40.82 -0.34 7.33 16 45 H 0.03 0.34 4.31 -51.93 -0.22 0.12 16 46 H 0.06 0.62 8.06 -51.93 -0.42 0.20 16 47 H 0.09 1.07 5.72 -51.93 -0.30 0.78 16 48 H 0.06 0.57 7.96 -51.93 -0.41 0.16 16 49 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.04 0.35 5.22 -51.93 -0.27 0.07 16 51 H 0.12 0.97 7.97 -52.49 -0.42 0.55 16 52 H 0.12 0.91 6.73 -52.49 -0.35 0.55 16 LS Contribution 402.34 15.07 6.06 6.06 Total: -1.00 -34.96 402.34 -9.80 -44.76 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -8.49 Total: 1.90 kcal Atomic # 6 Polarization: -5.57 SS G_CDS: -1.11 Total: -6.68 kcal Atomic # 7 Polarization: -48.74 SS G_CDS: -1.32 Total: -50.06 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.09 Total: -12.94 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.02 Total: 16.96 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -34.96 -9.80 -44.76 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891246982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.095 kcal (2) G-P(sol) polarization free energy of solvation -34.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.132 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds