Wall clock time and date at job start Tue Mar 31 2020 18:42:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46503 * 120.00093 * 2 1 4 4 C 1.39675 * 120.00025 * 179.71303 * 2 1 3 5 5 C 1.38907 * 120.07691 * 179.72362 * 4 2 1 6 6 C 1.38104 * 119.92646 * 179.77449 * 5 4 2 7 7 C 1.38283 * 120.07547 * 0.50846 * 6 5 4 8 8 C 1.50698 * 119.92930 * 179.72257 * 7 6 5 9 9 H 1.08997 * 109.47295 * 170.16340 * 8 7 6 10 10 C 1.52999 * 109.47042 * 290.16833 * 8 7 6 11 11 N 1.46505 * 109.47191 * 178.77261 * 10 8 7 12 12 C 1.34774 * 120.00144 * 178.16238 * 11 10 8 13 13 O 1.21280 * 120.00212 * 359.97438 * 12 11 10 14 14 C 1.50700 * 119.99998 * 179.97438 * 12 11 10 15 15 C 1.52993 * 109.47042 * 179.97438 * 14 12 11 16 16 C 1.50700 * 109.47042 * 179.97438 * 15 14 12 17 17 H 1.07993 * 120.00218 * 359.97438 * 16 15 14 18 18 C 1.37885 * 119.99982 * 180.02562 * 16 15 14 19 19 N 1.31505 * 119.99934 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99842 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47293 * 59.99962 * 20 18 16 22 22 H 1.48502 * 109.47110 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47366 * 299.99863 * 20 18 16 24 24 N 1.46901 * 109.46724 * 50.16256 * 8 7 6 25 25 C 1.46904 * 111.00345 * 268.32564 * 24 8 7 26 26 C 1.46903 * 111.00210 * 32.28710 * 24 8 7 27 27 C 1.38291 * 120.14789 * 359.74740 * 7 6 5 28 28 C 1.38110 * 120.07340 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.46726 * 0.02562 * 1 2 3 30 30 H 1.08999 * 109.46522 * 120.00784 * 1 2 3 31 31 H 1.08999 * 109.47089 * 240.00143 * 1 2 3 32 32 H 1.08994 * 109.47255 * 89.99356 * 3 2 1 33 33 H 1.08998 * 109.46679 * 209.99519 * 3 2 1 34 34 H 1.09003 * 109.46552 * 329.99179 * 3 2 1 35 35 H 1.08004 * 120.03420 * 0.02562 * 5 4 2 36 36 H 1.08002 * 119.96115 * 180.25506 * 6 5 4 37 37 H 1.09004 * 109.47258 * 298.76589 * 10 8 7 38 38 H 1.08999 * 109.47386 * 58.77237 * 10 8 7 39 39 H 0.97002 * 119.99346 * 358.15270 * 11 10 8 40 40 H 1.08996 * 109.46988 * 300.00134 * 14 12 11 41 41 H 1.08997 * 109.47154 * 59.99700 * 14 12 11 42 42 H 1.08996 * 109.47799 * 300.00201 * 15 14 12 43 43 H 1.09003 * 109.47365 * 60.00657 * 15 14 12 44 44 H 0.97006 * 120.00163 * 179.97438 * 19 18 16 45 45 H 1.09004 * 109.46682 * 52.47132 * 25 24 8 46 46 H 1.09001 * 109.47328 * 172.46936 * 25 24 8 47 47 H 1.08996 * 109.47030 * 292.47297 * 25 24 8 48 48 H 1.08997 * 109.47399 * 50.30447 * 26 24 8 49 49 H 1.08997 * 109.47205 * 170.31285 * 26 24 8 50 50 H 1.09002 * 109.46609 * 290.31100 * 26 24 8 51 51 H 1.07994 * 119.96235 * 179.97438 * 27 7 6 52 52 H 1.07994 * 120.03203 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1634 -1.2096 0.0061 5 6 3.5525 -1.2115 0.0003 6 6 4.2399 -2.4093 0.0110 7 6 3.5469 -3.6059 0.0169 8 6 4.3004 -4.9110 0.0222 9 1 3.6053 -5.7311 0.2020 10 6 4.9851 -5.1102 -1.3314 11 7 5.7416 -6.3647 -1.3162 12 6 6.4002 -6.7680 -2.4207 13 8 6.3664 -6.0925 -3.4274 14 6 7.1787 -8.0582 -2.4048 15 6 7.8254 -8.2805 -3.7734 16 6 8.6045 -9.5704 -3.7574 17 1 8.6356 -10.1713 -2.8606 18 6 9.2784 -9.9828 -4.8874 19 7 9.2409 -9.2509 -5.9793 20 14 10.2447 -11.5814 -4.8672 21 1 9.3283 -12.7099 -4.5640 22 1 10.8733 -11.7966 -6.1953 23 1 11.3011 -11.5082 -3.8262 24 7 5.3143 -4.8866 1.0850 25 6 6.6002 -4.3926 0.5746 26 6 4.8589 -4.0852 2.2288 27 6 2.1640 -3.6077 0.0173 28 6 1.4704 -2.4135 0.0124 29 1 -0.3632 1.0276 -0.0005 30 1 -0.3632 -0.5140 -0.8899 31 1 -0.3633 -0.5138 0.8900 32 1 2.3791 1.5835 1.0276 33 1 3.1500 1.1383 -0.5138 34 1 1.6085 2.0283 -0.5140 35 1 4.0943 -0.2772 -0.0085 36 1 5.3199 -2.4113 0.0107 37 1 4.2312 -5.1501 -2.1176 38 1 5.6641 -4.2788 -1.5209 39 1 5.7684 -6.9050 -0.5110 40 1 7.9540 -8.0053 -1.6405 41 1 6.5055 -8.8861 -2.1827 42 1 7.0499 -8.3335 -4.5375 43 1 8.4987 -7.4526 -3.9960 44 1 9.7153 -9.5409 -6.7741 45 1 6.4483 -3.4386 0.0697 46 1 7.2931 -4.2579 1.4052 47 1 7.0131 -5.1148 -0.1297 48 1 3.8595 -4.4063 2.5226 49 1 5.5450 -4.2222 3.0646 50 1 4.8341 -3.0323 1.9478 51 1 1.6259 -4.5440 0.0215 52 1 0.3904 -2.4156 0.0123 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000891246982.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:42:29 Heat of formation + Delta-G solvation = -8.040268 kcal Electronic energy + Delta-G solvation = -28601.359166 eV Core-core repulsion = 24793.534447 eV Total energy + Delta-G solvation = -3807.824719 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.54145 -40.49111 -39.13362 -36.64763 -35.57546 -35.19982 -33.03278 -32.23949 -31.76610 -29.72576 -29.04248 -28.33456 -27.63814 -25.60734 -25.14766 -23.50169 -23.25739 -22.02204 -21.29038 -20.68556 -18.81899 -18.30666 -17.49415 -17.41629 -17.19149 -16.60953 -16.45616 -16.14158 -15.96185 -15.92824 -15.80304 -15.53272 -14.80710 -14.65502 -14.58934 -14.31093 -14.15505 -14.01528 -13.77913 -13.47462 -13.30434 -13.20494 -13.05341 -13.00737 -12.77947 -12.74593 -12.71276 -12.51199 -12.45051 -12.32247 -12.15837 -11.87342 -11.61599 -11.59717 -11.29515 -10.77505 -10.55433 -10.53902 -10.00044 -9.84603 -9.21950 -8.17867 -8.15318 -6.29470 0.50470 0.56428 1.43502 1.48345 1.55931 1.76720 2.22840 2.28506 2.47060 2.86549 3.10058 3.17173 3.76155 3.82692 3.87609 4.01999 4.16079 4.17025 4.19125 4.35886 4.38010 4.38742 4.47974 4.54142 4.57599 4.60694 4.62403 4.69672 4.74522 4.76127 4.79825 4.83672 4.86035 4.87453 4.99165 5.08103 5.12522 5.13943 5.19485 5.35445 5.41521 5.48881 5.54706 5.66726 5.71285 5.88263 5.90577 6.04015 6.11301 6.20695 6.33856 6.52127 6.68344 6.88932 7.39547 7.41611 8.96979 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023751 B = 0.001961 C = 0.001899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1178.601615 B =14274.398679 C =14740.549416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.645 5.645 3 C 0.088 3.912 4 C 0.207 3.793 5 C -0.208 4.208 6 C -0.073 4.073 7 C -0.174 4.174 8 C 0.131 3.869 9 H 0.106 0.894 10 C 0.125 3.875 11 N -0.709 5.709 12 C 0.511 3.489 13 O -0.592 6.592 14 C -0.119 4.119 15 C 0.043 3.957 16 C -0.543 4.543 17 H 0.076 0.924 18 C -0.008 4.008 19 N -0.938 5.938 20 Si 0.975 3.025 21 H -0.262 1.262 22 H -0.288 1.288 23 H -0.262 1.262 24 N -0.531 5.531 25 C 0.004 3.996 26 C 0.025 3.975 27 C -0.060 4.060 28 C -0.203 4.203 29 H 0.091 0.909 30 H 0.052 0.948 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.129 0.871 36 H 0.121 0.879 37 H 0.056 0.944 38 H 0.055 0.945 39 H 0.419 0.581 40 H 0.104 0.896 41 H 0.103 0.897 42 H -0.019 1.019 43 H -0.019 1.019 44 H 0.262 0.738 45 H 0.031 0.969 46 H 0.077 0.923 47 H 0.067 0.933 48 H 0.069 0.931 49 H 0.072 0.928 50 H 0.035 0.965 51 H 0.137 0.863 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.696 19.758 21.719 34.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.357 5.357 3 C -0.054 4.054 4 C 0.104 3.896 5 C -0.231 4.231 6 C -0.091 4.091 7 C -0.178 4.178 8 C 0.022 3.978 9 H 0.124 0.876 10 C 0.001 3.999 11 N -0.363 5.363 12 C 0.299 3.701 13 O -0.472 6.472 14 C -0.158 4.158 15 C 0.005 3.995 16 C -0.581 4.581 17 H 0.094 0.906 18 C -0.205 4.205 19 N -0.578 5.578 20 Si 0.798 3.202 21 H -0.187 1.187 22 H -0.214 1.214 23 H -0.187 1.187 24 N -0.254 5.254 25 C -0.144 4.144 26 C -0.123 4.123 27 C -0.079 4.079 28 C -0.225 4.225 29 H 0.110 0.890 30 H 0.071 0.929 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.147 0.853 36 H 0.138 0.862 37 H 0.074 0.926 38 H 0.073 0.927 39 H 0.257 0.743 40 H 0.122 0.878 41 H 0.122 0.878 42 H -0.001 1.001 43 H 0.000 1.000 44 H 0.071 0.929 45 H 0.049 0.951 46 H 0.095 0.905 47 H 0.085 0.915 48 H 0.088 0.912 49 H 0.091 0.909 50 H 0.054 0.946 51 H 0.155 0.845 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -18.708 19.960 21.022 34.501 hybrid contribution 0.499 0.227 -0.679 0.872 sum -18.209 20.186 20.344 33.955 Atomic orbital electron populations 1.21734 0.78279 1.03723 1.01322 1.46599 1.05958 1.03167 1.79939 1.21789 0.97492 0.84507 1.01654 1.18025 0.91308 0.86596 0.93635 1.20778 0.92532 0.98659 1.11092 1.21018 0.99659 0.91941 0.96532 1.19979 0.94458 0.94611 1.08747 1.20830 0.92866 0.95215 0.88855 0.87598 1.21503 0.94739 0.86420 0.97264 1.45931 1.51235 1.24408 1.14681 1.21323 0.78708 0.87635 0.82396 1.90654 1.63895 1.57980 1.34706 1.21623 0.99744 0.93735 1.00726 1.18676 0.93966 0.95164 0.91666 1.21702 1.30786 1.07001 0.98632 0.90572 1.26154 0.97918 1.01424 0.95051 1.70177 1.44026 1.40474 1.03118 0.85360 0.78764 0.78736 0.77290 1.18690 1.21371 1.18689 1.62544 1.02481 1.53074 1.07280 1.22797 0.91770 0.98872 1.00934 1.22529 1.01257 0.95805 0.92673 1.20988 0.93009 0.98252 0.95678 1.20806 1.00271 0.90879 1.10574 0.89028 0.92889 0.92459 0.92888 0.91709 0.89840 0.85328 0.86175 0.92572 0.92720 0.74277 0.87806 0.87837 1.00055 1.00014 0.92903 0.95090 0.90470 0.91481 0.91235 0.90941 0.94641 0.84525 0.84829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.81 9.40 127.77 1.20 2.01 16 2 N -0.65 -8.78 3.41 -747.29 -2.55 -11.33 16 3 C 0.09 0.84 10.16 127.77 1.30 2.14 16 4 C 0.21 3.67 6.55 38.21 0.25 3.92 16 5 C -0.21 -3.88 9.21 22.40 0.21 -3.67 16 6 C -0.07 -1.44 6.64 22.25 0.15 -1.29 16 7 C -0.17 -3.36 3.56 -19.84 -0.07 -3.43 16 8 C 0.13 2.57 2.73 44.17 0.12 2.69 16 9 H 0.11 1.88 7.90 -2.39 -0.02 1.87 16 10 C 0.12 3.32 4.28 86.38 0.37 3.69 16 11 N -0.71 -20.24 3.72 -463.05 -1.72 -21.96 16 12 C 0.51 20.44 7.83 87.66 0.69 21.12 16 13 O -0.59 -30.09 15.98 -3.03 -0.05 -30.14 16 14 C -0.12 -4.90 5.64 29.85 0.17 -4.73 16 15 C 0.04 2.45 4.26 29.85 0.13 2.58 16 16 C -0.54 -31.50 9.11 25.60 0.23 -31.26 16 17 H 0.08 4.00 7.74 -2.91 -0.02 3.98 16 18 C -0.01 -0.48 5.46 84.66 0.46 -0.02 16 19 N -0.94 -60.46 13.29 21.45 0.28 -60.18 16 20 Si 0.97 44.95 29.54 68.60 2.03 46.97 16 21 H -0.26 -11.41 7.11 99.48 0.71 -10.70 16 22 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 23 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 24 N -0.53 -9.85 4.88 -927.72 -4.53 -14.38 16 25 C 0.00 0.09 8.03 127.69 1.03 1.11 16 26 C 0.03 0.40 8.45 127.69 1.08 1.48 16 27 C -0.06 -1.05 9.66 22.25 0.21 -0.84 16 28 C -0.20 -3.44 9.31 22.40 0.21 -3.24 16 29 H 0.09 0.43 7.79 -2.39 -0.02 0.41 16 30 H 0.05 0.48 7.96 -2.39 -0.02 0.46 16 31 H 0.06 0.47 7.94 -2.39 -0.02 0.45 16 32 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.06 0.67 6.19 -2.39 -0.01 0.66 16 34 H 0.08 0.50 7.92 -2.39 -0.02 0.48 16 35 H 0.13 2.06 6.14 -2.91 -0.02 2.04 16 36 H 0.12 2.40 4.77 -2.91 -0.01 2.39 16 37 H 0.06 1.67 8.14 -2.38 -0.02 1.66 16 38 H 0.05 1.61 6.20 -2.39 -0.01 1.60 16 39 H 0.42 9.60 8.19 -92.71 -0.76 8.84 16 40 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 41 H 0.10 3.78 8.14 -2.39 -0.02 3.76 16 42 H -0.02 -1.23 8.10 -2.39 -0.02 -1.24 16 43 H -0.02 -1.20 8.10 -2.39 -0.02 -1.22 16 44 H 0.26 15.85 8.31 -92.70 -0.77 15.08 16 45 H 0.03 0.64 4.31 -2.38 -0.01 0.63 16 46 H 0.08 1.36 8.06 -2.39 -0.02 1.34 16 47 H 0.07 1.62 5.72 -2.39 -0.01 1.61 16 48 H 0.07 1.07 7.96 -2.39 -0.02 1.05 16 49 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 50 H 0.04 0.60 5.22 -2.39 -0.01 0.59 16 51 H 0.14 1.91 7.97 -2.91 -0.02 1.88 16 52 H 0.13 1.80 6.73 -2.91 -0.02 1.79 16 Total: -1.00 -78.66 402.34 1.36 -77.31 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.16 Total: 21.44 kcal Atomic # 6 Polarization: -15.47 SS G_CDS: 7.73 Total: -7.75 kcal Atomic # 7 Polarization: -99.33 SS G_CDS: -8.51 Total: -107.84 kcal Atomic # 8 Polarization: -30.09 SS G_CDS: -0.05 Total: -30.14 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.97 kcal Total: -78.66 1.36 -77.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000891246982.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.268 kcal (2) G-P(sol) polarization free energy of solvation -78.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.396 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds