Wall clock time and date at job start Tue Mar 31 2020 18:43:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00089 * 2 1 4 4 C 1.53001 * 109.47260 * 66.04646 * 3 2 1 5 5 C 1.52997 * 109.47368 * 180.02562 * 4 3 2 6 6 C 1.53117 * 109.52353 * 174.99839 * 5 4 3 7 7 C 1.53044 * 109.27792 * 177.62341 * 6 5 4 8 8 N 1.46847 * 109.51335 * 300.82256 * 7 6 5 9 9 C 1.39168 * 111.00144 * 185.83469 * 8 7 6 10 10 C 1.39479 * 120.86228 * 359.72187 * 9 8 7 11 11 C 1.37895 * 119.06220 * 179.73127 * 10 9 8 12 12 N 1.31997 * 120.84669 * 0.55628 * 11 10 9 13 13 C 1.32001 * 121.90476 * 359.71624 * 12 11 10 14 14 C 1.37886 * 120.84622 * 359.97438 * 13 12 11 15 15 C 1.46830 * 111.21086 * 61.74856 * 8 7 6 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 8 7 17 17 C 1.46901 * 111.00120 * 236.04370 * 2 1 3 18 18 C 1.52997 * 109.46922 * 293.95548 * 17 2 1 19 19 H 1.09000 * 109.47534 * 60.00130 * 18 17 2 20 20 O 1.42902 * 109.47447 * 299.99885 * 18 17 2 21 21 C 1.50702 * 109.46930 * 179.97438 * 18 17 2 22 22 H 1.07998 * 119.99733 * 0.02562 * 21 18 17 23 23 C 1.37879 * 120.00030 * 179.97438 * 21 18 17 24 24 N 1.31514 * 119.99928 * 180.02562 * 23 21 18 25 25 Si 1.86799 * 119.99943 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.47339 * 89.99392 * 25 23 21 27 27 H 1.48501 * 109.46894 * 209.99553 * 25 23 21 28 28 H 1.48499 * 109.47050 * 329.99410 * 25 23 21 29 29 H 1.09007 * 109.46705 * 59.99821 * 1 2 3 30 30 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47419 * 300.00350 * 1 2 3 32 32 H 1.09001 * 109.47318 * 306.04273 * 3 2 1 33 33 H 1.09002 * 109.47155 * 186.03970 * 3 2 1 34 34 H 1.09000 * 109.47783 * 59.99593 * 4 3 2 35 35 H 1.09004 * 109.47171 * 300.00002 * 4 3 2 36 36 H 1.09004 * 109.52727 * 54.86780 * 5 4 3 37 37 H 1.09001 * 109.50874 * 57.68521 * 6 5 4 38 38 H 1.09002 * 109.53469 * 297.57642 * 6 5 4 39 39 H 1.09002 * 109.46396 * 60.83566 * 7 6 5 40 40 H 1.08994 * 109.46485 * 180.81491 * 7 6 5 41 41 H 1.07992 * 120.46967 * 359.97438 * 10 9 8 42 42 H 1.08006 * 119.58003 * 180.29734 * 11 10 9 43 43 H 1.08003 * 119.57355 * 180.02562 * 13 12 11 44 44 H 1.08002 * 120.46980 * 179.97438 * 14 13 12 45 45 H 1.08995 * 109.46742 * 178.23410 * 15 8 7 46 46 H 1.09004 * 109.45381 * 58.25744 * 15 8 7 47 47 H 1.08997 * 109.50308 * 299.23764 * 16 15 8 48 48 H 1.09000 * 109.50697 * 179.11489 * 16 15 8 49 49 H 1.08994 * 109.47031 * 53.95572 * 17 2 1 50 50 H 1.09002 * 109.46725 * 173.95802 * 17 2 1 51 51 H 0.96696 * 113.99933 * 300.00144 * 20 18 17 52 52 H 0.97000 * 120.00051 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1792 3.4860 1.3180 6 6 1.7103 4.2140 2.5808 7 6 2.3095 5.6221 2.6042 8 7 3.7751 5.5318 2.5850 9 6 4.3542 6.7881 2.7375 10 6 3.5632 7.9284 2.8772 11 6 4.1761 9.1540 3.0316 12 7 5.4921 9.2567 3.0371 13 6 6.2747 8.2023 2.9022 14 6 5.7406 6.9403 2.7493 15 6 4.2512 4.8787 1.3592 16 6 3.7099 3.4485 1.2986 17 6 1.9955 -0.7660 -1.1375 18 6 1.6314 -2.2426 -0.9702 19 1 0.5472 -2.3475 -0.9322 20 8 2.2008 -2.7392 0.2428 21 6 2.1710 -3.0284 -2.1375 22 1 2.7191 -2.5249 -2.9202 23 6 1.9658 -4.3901 -2.2058 24 7 2.4371 -5.0758 -3.2242 25 14 1.0184 -5.2609 -0.8517 26 1 -0.4273 -5.2766 -1.1904 27 1 1.5113 -6.6556 -0.7209 28 1 1.2181 -4.5428 0.4327 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5612 1.9273 -0.8309 33 1 3.0797 1.3443 -0.1081 34 1 2.0657 1.5016 2.1493 35 1 0.5472 2.0845 1.4265 36 1 1.8167 4.0151 0.4366 37 1 2.0401 3.6636 3.4619 38 1 0.6224 4.2816 2.5798 39 1 1.9683 6.1766 1.7300 40 1 1.9893 6.1381 3.5092 41 1 2.4860 7.8521 2.8685 42 1 3.5717 10.0418 3.1452 43 1 7.3471 8.3297 2.9126 44 1 6.3866 6.0819 2.6390 45 1 5.3409 4.8549 1.3600 46 1 3.9007 5.4367 0.4909 47 1 4.0710 2.8860 2.1596 48 1 4.0505 2.9690 0.3809 49 1 1.5612 -0.3873 -2.0627 50 1 3.0798 -0.6611 -1.1755 51 1 3.1651 -2.6772 0.2788 52 1 2.2924 -6.0338 -3.2724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000930170296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:31 Heat of formation + Delta-G solvation = -6.481328 kcal Electronic energy + Delta-G solvation = -28420.111694 eV Core-core repulsion = 24612.354576 eV Total energy + Delta-G solvation = -3807.757118 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.14433 -39.24927 -37.82139 -35.98535 -34.72723 -32.21973 -32.15269 -31.54950 -30.97767 -29.44510 -28.18381 -26.54753 -25.25816 -24.57396 -23.34593 -22.63623 -22.04376 -20.63866 -20.11201 -19.96039 -18.21374 -17.30478 -16.70961 -16.07246 -15.68070 -15.40389 -15.20135 -15.04599 -14.84754 -14.75348 -14.58230 -14.15971 -14.10271 -14.01336 -13.87951 -13.63643 -13.23086 -12.95460 -12.81049 -12.60913 -12.38896 -12.12662 -11.76425 -11.61474 -11.59656 -11.27976 -11.16607 -10.95187 -10.90980 -10.86594 -10.65444 -10.54722 -10.38750 -10.19119 -9.84197 -9.83796 -9.55155 -9.00576 -8.62068 -8.61372 -8.23008 -7.78472 -6.12855 -4.23996 0.78808 0.90922 3.12744 3.39294 3.49094 3.50837 3.77154 4.12711 4.15013 4.29837 4.34477 4.46788 4.54599 4.61228 4.63038 4.74250 4.82874 4.90928 4.97440 5.04868 5.08751 5.17319 5.22630 5.31162 5.33805 5.35161 5.41870 5.44528 5.50143 5.58893 5.60504 5.69257 5.75583 5.77282 5.83028 5.87193 5.95058 5.99817 6.05115 6.14606 6.20428 6.27113 6.31817 6.41586 6.48048 6.61465 6.70651 7.27841 7.39773 7.58471 7.67820 7.70420 8.29802 8.83864 9.12885 9.52455 10.97788 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.001817 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.740480 B =15409.545635 C =15867.300476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.534 5.534 3 C 0.054 3.946 4 C -0.108 4.108 5 C -0.088 4.088 6 C -0.113 4.113 7 C 0.051 3.949 8 N -0.485 5.485 9 C 0.160 3.840 10 C -0.230 4.230 11 C 0.122 3.878 12 N -0.510 5.510 13 C 0.119 3.881 14 C -0.198 4.198 15 C 0.060 3.940 16 C -0.116 4.116 17 C 0.040 3.960 18 C 0.201 3.799 19 H 0.052 0.948 20 O -0.570 6.570 21 C -0.566 4.566 22 H 0.070 0.930 23 C 0.083 3.917 24 N -0.894 5.894 25 Si 0.871 3.129 26 H -0.289 1.289 27 H -0.296 1.296 28 H -0.215 1.215 29 H 0.017 0.983 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.023 0.977 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.073 0.927 39 H 0.048 0.952 40 H 0.082 0.918 41 H 0.137 0.863 42 H 0.154 0.846 43 H 0.156 0.844 44 H 0.137 0.863 45 H 0.083 0.917 46 H 0.045 0.955 47 H 0.077 0.923 48 H 0.078 0.922 49 H 0.030 0.970 50 H 0.067 0.933 51 H 0.354 0.646 52 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.611 26.621 12.646 29.516 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.258 5.258 3 C -0.074 4.074 4 C -0.146 4.146 5 C -0.108 4.108 6 C -0.150 4.150 7 C -0.076 4.076 8 N -0.199 5.199 9 C 0.053 3.947 10 C -0.253 4.253 11 C -0.035 4.035 12 N -0.221 5.221 13 C -0.037 4.037 14 C -0.221 4.221 15 C -0.065 4.065 16 C -0.153 4.153 17 C -0.087 4.087 18 C 0.143 3.857 19 H 0.070 0.930 20 O -0.375 6.375 21 C -0.604 4.604 22 H 0.088 0.912 23 C -0.121 4.121 24 N -0.531 5.531 25 Si 0.697 3.303 26 H -0.215 1.215 27 H -0.223 1.223 28 H -0.137 1.137 29 H 0.035 0.965 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.080 0.920 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.101 0.899 41 H 0.154 0.846 42 H 0.171 0.829 43 H 0.173 0.827 44 H 0.154 0.846 45 H 0.102 0.898 46 H 0.064 0.936 47 H 0.096 0.904 48 H 0.096 0.904 49 H 0.048 0.952 50 H 0.086 0.914 51 H 0.199 0.801 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.643 26.548 13.602 29.875 hybrid contribution -0.824 -0.501 -1.221 1.556 sum 0.819 26.048 12.381 28.852 Atomic orbital electron populations 1.22408 0.88372 1.02374 0.99277 1.62006 1.07317 1.11745 1.44683 1.22157 1.00054 0.89254 0.95937 1.21603 1.00786 0.93586 0.98611 1.21221 0.95247 0.96599 0.97690 1.21678 1.00077 0.94232 0.99052 1.22332 0.85027 0.98566 1.01641 1.58726 1.08391 1.16228 1.36571 1.19314 0.93495 0.88482 0.93454 1.22291 1.01355 0.93026 1.08612 1.22594 0.90859 0.96678 0.93372 1.67738 1.05812 1.33657 1.14927 1.22624 1.00059 0.87622 0.93361 1.21830 0.93845 0.99605 1.06795 1.22295 1.00680 0.95505 0.88003 1.21761 0.95361 0.94757 1.03442 1.22835 0.99451 0.96772 0.89659 1.19714 0.94461 0.87572 0.83933 0.93022 1.86658 1.23842 1.85440 1.41572 1.21530 1.38078 0.93408 1.07387 0.91169 1.24988 0.94217 0.97506 0.95392 1.69960 1.44896 1.07919 1.30344 0.87030 0.78976 0.78168 0.86116 1.21547 1.22276 1.13695 0.96487 0.90917 0.92121 0.95850 0.91074 0.90835 0.91957 0.91526 0.90611 0.90869 0.93403 0.89927 0.84554 0.82919 0.82684 0.84565 0.89816 0.93637 0.90432 0.90361 0.95180 0.91401 0.80068 0.92612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.37 9.13 60.06 0.55 0.92 16 2 N -0.53 -8.79 4.63 -242.92 -1.12 -9.91 16 3 C 0.05 0.70 4.72 -3.83 -0.02 0.68 16 4 C -0.11 -1.13 4.61 -26.73 -0.12 -1.25 16 5 C -0.09 -0.73 2.25 -90.50 -0.20 -0.93 16 6 C -0.11 -0.82 5.38 -26.65 -0.14 -0.97 16 7 C 0.05 0.35 4.16 -3.83 -0.02 0.34 16 8 N -0.48 -3.93 4.70 -170.96 -0.80 -4.73 16 9 C 0.16 1.35 5.65 -83.61 -0.47 0.87 16 10 C -0.23 -1.75 8.88 -39.24 -0.35 -2.10 16 11 C 0.12 0.97 11.17 -17.61 -0.20 0.78 16 12 N -0.51 -4.89 10.36 -13.35 -0.14 -5.03 16 13 C 0.12 0.97 11.17 -17.61 -0.20 0.77 16 14 C -0.20 -1.57 9.25 -39.25 -0.36 -1.93 16 15 C 0.06 0.46 5.26 -3.84 -0.02 0.44 16 16 C -0.12 -0.94 5.08 -26.65 -0.14 -1.08 16 17 C 0.04 0.78 4.56 -3.82 -0.02 0.76 16 18 C 0.20 4.66 2.19 -27.88 -0.06 4.59 16 19 H 0.05 1.24 5.90 -51.93 -0.31 0.94 16 20 O -0.57 -13.01 10.01 -35.23 -0.35 -13.37 16 21 C -0.57 -15.63 9.34 -34.44 -0.32 -15.95 16 22 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 23 C 0.08 2.39 5.47 -17.82 -0.10 2.30 16 24 N -0.89 -27.24 13.96 55.43 0.77 -26.47 16 25 Si 0.87 21.84 26.99 -169.99 -4.59 17.26 16 26 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 27 H -0.30 -7.47 7.11 56.52 0.40 -7.07 16 28 H -0.21 -5.29 5.30 56.52 0.30 -4.99 16 29 H 0.02 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 1.25 6.30 -51.93 -0.33 0.92 16 31 H 0.06 0.80 6.47 -51.93 -0.34 0.46 16 32 H 0.02 0.30 8.12 -51.93 -0.42 -0.12 16 33 H 0.07 0.90 6.43 -51.93 -0.33 0.57 16 34 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 6.55 -51.93 -0.34 0.31 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 39 H 0.05 0.32 7.76 -51.93 -0.40 -0.08 16 40 H 0.08 0.52 7.04 -51.93 -0.37 0.16 16 41 H 0.14 0.80 5.97 -52.49 -0.31 0.49 16 42 H 0.15 0.83 8.06 -52.48 -0.42 0.40 16 43 H 0.16 0.86 8.06 -52.48 -0.42 0.44 16 44 H 0.14 0.89 7.24 -52.49 -0.38 0.51 16 45 H 0.08 0.59 6.78 -51.93 -0.35 0.23 16 46 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 47 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 48 H 0.08 0.65 6.71 -51.93 -0.35 0.30 16 49 H 0.03 0.59 8.12 -51.93 -0.42 0.17 16 50 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 51 H 0.35 7.26 9.04 45.56 0.41 7.67 16 52 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -32.36 394.19 -10.59 -42.95 By element: Atomic # 1 Polarization: 13.22 SS G_CDS: -8.11 Total: 5.11 kcal Atomic # 6 Polarization: -9.57 SS G_CDS: -2.19 Total: -11.76 kcal Atomic # 7 Polarization: -44.84 SS G_CDS: -1.29 Total: -46.14 kcal Atomic # 8 Polarization: -13.01 SS G_CDS: -0.35 Total: -13.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.59 Total: 17.26 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.36 -10.59 -42.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930170296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.471 kcal (2) G-P(sol) polarization free energy of solvation -32.363 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds