Wall clock time and date at job start Tue Mar 31 2020 18:43:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46896 * 111.00089 * 2 1 4 4 C 1.53001 * 109.47260 * 66.04646 * 3 2 1 5 5 C 1.52997 * 109.47368 * 180.02562 * 4 3 2 6 6 C 1.53117 * 109.52353 * 174.99839 * 5 4 3 7 7 C 1.53044 * 109.27792 * 177.62341 * 6 5 4 8 8 N 1.46847 * 109.51335 * 300.82256 * 7 6 5 9 9 C 1.39168 * 111.00144 * 185.83469 * 8 7 6 10 10 C 1.39479 * 120.86228 * 359.72187 * 9 8 7 11 11 C 1.37895 * 119.06220 * 179.73127 * 10 9 8 12 12 N 1.31997 * 120.84669 * 0.55628 * 11 10 9 13 13 C 1.32001 * 121.90476 * 359.71624 * 12 11 10 14 14 C 1.37886 * 120.84622 * 359.97438 * 13 12 11 15 15 C 1.46830 * 111.21086 * 61.74856 * 8 7 6 16 16 C 1.53038 * 109.51757 * 298.25173 * 15 8 7 17 17 C 1.46901 * 111.00120 * 236.04370 * 2 1 3 18 18 C 1.52997 * 109.46922 * 293.95548 * 17 2 1 19 19 H 1.09000 * 109.47534 * 60.00130 * 18 17 2 20 20 O 1.42902 * 109.47447 * 299.99885 * 18 17 2 21 21 C 1.50702 * 109.46930 * 179.97438 * 18 17 2 22 22 H 1.07998 * 119.99733 * 0.02562 * 21 18 17 23 23 C 1.37879 * 120.00030 * 179.97438 * 21 18 17 24 24 N 1.31514 * 119.99928 * 180.02562 * 23 21 18 25 25 Si 1.86799 * 119.99943 * 0.02562 * 23 21 18 26 26 H 1.48497 * 109.47339 * 89.99392 * 25 23 21 27 27 H 1.48501 * 109.46894 * 209.99553 * 25 23 21 28 28 H 1.48499 * 109.47050 * 329.99410 * 25 23 21 29 29 H 1.09007 * 109.46705 * 59.99821 * 1 2 3 30 30 H 1.08996 * 109.47298 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47419 * 300.00350 * 1 2 3 32 32 H 1.09001 * 109.47318 * 306.04273 * 3 2 1 33 33 H 1.09002 * 109.47155 * 186.03970 * 3 2 1 34 34 H 1.09000 * 109.47783 * 59.99593 * 4 3 2 35 35 H 1.09004 * 109.47171 * 300.00002 * 4 3 2 36 36 H 1.09004 * 109.52727 * 54.86780 * 5 4 3 37 37 H 1.09001 * 109.50874 * 57.68521 * 6 5 4 38 38 H 1.09002 * 109.53469 * 297.57642 * 6 5 4 39 39 H 1.09002 * 109.46396 * 60.83566 * 7 6 5 40 40 H 1.08994 * 109.46485 * 180.81491 * 7 6 5 41 41 H 1.07992 * 120.46967 * 359.97438 * 10 9 8 42 42 H 1.08006 * 119.58003 * 180.29734 * 11 10 9 43 43 H 1.08003 * 119.57355 * 180.02562 * 13 12 11 44 44 H 1.08002 * 120.46980 * 179.97438 * 14 13 12 45 45 H 1.08995 * 109.46742 * 178.23410 * 15 8 7 46 46 H 1.09004 * 109.45381 * 58.25744 * 15 8 7 47 47 H 1.08997 * 109.50308 * 299.23764 * 16 15 8 48 48 H 1.09000 * 109.50697 * 179.11489 * 16 15 8 49 49 H 1.08994 * 109.47031 * 53.95572 * 17 2 1 50 50 H 1.09002 * 109.46725 * 173.95802 * 17 2 1 51 51 H 0.96696 * 113.99933 * 300.00144 * 20 18 17 52 52 H 0.97000 * 120.00051 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6315 2.0574 1.3183 5 6 2.1792 3.4860 1.3180 6 6 1.7103 4.2140 2.5808 7 6 2.3095 5.6221 2.6042 8 7 3.7751 5.5318 2.5850 9 6 4.3542 6.7881 2.7375 10 6 3.5632 7.9284 2.8772 11 6 4.1761 9.1540 3.0316 12 7 5.4921 9.2567 3.0371 13 6 6.2747 8.2023 2.9022 14 6 5.7406 6.9403 2.7493 15 6 4.2512 4.8787 1.3592 16 6 3.7099 3.4485 1.2986 17 6 1.9955 -0.7660 -1.1375 18 6 1.6314 -2.2426 -0.9702 19 1 0.5472 -2.3475 -0.9322 20 8 2.2008 -2.7392 0.2428 21 6 2.1710 -3.0284 -2.1375 22 1 2.7191 -2.5249 -2.9202 23 6 1.9658 -4.3901 -2.2058 24 7 2.4371 -5.0758 -3.2242 25 14 1.0184 -5.2609 -0.8517 26 1 -0.4273 -5.2766 -1.1904 27 1 1.5113 -6.6556 -0.7209 28 1 1.2181 -4.5428 0.4327 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.5612 1.9273 -0.8309 33 1 3.0797 1.3443 -0.1081 34 1 2.0657 1.5016 2.1493 35 1 0.5472 2.0845 1.4265 36 1 1.8167 4.0151 0.4366 37 1 2.0401 3.6636 3.4619 38 1 0.6224 4.2816 2.5798 39 1 1.9683 6.1766 1.7300 40 1 1.9893 6.1381 3.5092 41 1 2.4860 7.8521 2.8685 42 1 3.5717 10.0418 3.1452 43 1 7.3471 8.3297 2.9126 44 1 6.3866 6.0819 2.6390 45 1 5.3409 4.8549 1.3600 46 1 3.9007 5.4367 0.4909 47 1 4.0710 2.8860 2.1596 48 1 4.0505 2.9690 0.3809 49 1 1.5612 -0.3873 -2.0627 50 1 3.0798 -0.6611 -1.1755 51 1 3.1651 -2.6772 0.2788 52 1 2.2924 -6.0338 -3.2724 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000930170296.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:43:30 Heat of formation + Delta-G solvation = -29.489452 kcal Electronic energy + Delta-G solvation = -28421.109401 eV Core-core repulsion = 24612.354576 eV Total energy + Delta-G solvation = -3808.754825 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.72044 -39.94679 -39.12544 -37.29398 -35.83304 -34.39743 -32.72136 -32.35644 -31.55426 -30.74650 -29.40997 -27.93108 -26.44994 -25.25268 -24.38551 -23.29847 -22.87258 -21.83743 -21.43361 -20.69402 -19.35353 -18.76433 -17.30350 -16.87211 -16.71866 -16.63365 -16.47316 -16.37420 -16.05029 -15.73310 -15.31243 -15.16741 -15.14663 -15.01628 -14.68496 -14.59864 -14.50515 -14.13765 -13.84819 -13.75124 -13.47888 -13.08890 -12.91684 -12.87284 -12.64691 -12.54518 -12.47424 -12.25074 -12.19495 -11.94656 -11.76836 -11.58984 -11.28245 -11.17276 -11.03763 -10.98221 -10.79460 -10.43942 -10.11246 -10.08823 -9.20189 -9.12119 -8.35446 -6.49892 0.22917 0.31533 1.39619 1.45574 1.76590 2.44529 2.56280 2.93056 3.01324 3.04791 3.63088 3.66329 3.75002 3.82340 3.90662 4.07054 4.09198 4.15909 4.19671 4.24508 4.30723 4.32696 4.38218 4.43100 4.46217 4.50669 4.57330 4.65095 4.69585 4.73314 4.76669 4.80285 4.83797 4.87156 4.93112 4.95640 4.99756 5.06854 5.09515 5.16105 5.20282 5.28084 5.37272 5.47597 5.50576 5.55511 5.66695 5.91465 6.08189 6.13574 6.17217 6.31544 6.62920 7.10423 7.23520 7.39262 8.78688 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.030502 B = 0.001817 C = 0.001764 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.740480 B =15409.545635 C =15867.300476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.542 5.542 3 C 0.055 3.945 4 C -0.097 4.097 5 C -0.081 4.081 6 C -0.108 4.108 7 C 0.051 3.949 8 N -0.492 5.492 9 C 0.147 3.853 10 C -0.231 4.231 11 C 0.112 3.888 12 N -0.538 5.538 13 C 0.110 3.890 14 C -0.205 4.205 15 C 0.063 3.937 16 C -0.112 4.112 17 C 0.053 3.947 18 C 0.209 3.791 19 H 0.048 0.952 20 O -0.572 6.572 21 C -0.567 4.567 22 H 0.036 0.964 23 C 0.028 3.972 24 N -0.940 5.940 25 Si 0.938 3.062 26 H -0.286 1.286 27 H -0.297 1.297 28 H -0.204 1.204 29 H 0.022 0.978 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.027 0.973 33 H 0.072 0.928 34 H 0.063 0.937 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.085 0.915 39 H 0.054 0.946 40 H 0.090 0.910 41 H 0.154 0.846 42 H 0.174 0.826 43 H 0.174 0.826 44 H 0.146 0.854 45 H 0.087 0.913 46 H 0.045 0.955 47 H 0.068 0.932 48 H 0.075 0.925 49 H 0.021 0.979 50 H 0.067 0.933 51 H 0.365 0.635 52 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.642 28.058 14.395 31.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.266 5.266 3 C -0.072 4.072 4 C -0.135 4.135 5 C -0.101 4.101 6 C -0.145 4.145 7 C -0.075 4.075 8 N -0.206 5.206 9 C 0.040 3.960 10 C -0.254 4.254 11 C -0.044 4.044 12 N -0.249 5.249 13 C -0.045 4.045 14 C -0.227 4.227 15 C -0.062 4.062 16 C -0.150 4.150 17 C -0.075 4.075 18 C 0.150 3.850 19 H 0.066 0.934 20 O -0.378 6.378 21 C -0.606 4.606 22 H 0.054 0.946 23 C -0.171 4.171 24 N -0.579 5.579 25 Si 0.763 3.237 26 H -0.212 1.212 27 H -0.224 1.224 28 H -0.126 1.126 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.104 0.896 32 H 0.045 0.955 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.088 0.912 37 H 0.086 0.914 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.109 0.891 41 H 0.171 0.829 42 H 0.191 0.809 43 H 0.191 0.809 44 H 0.164 0.836 45 H 0.106 0.894 46 H 0.063 0.937 47 H 0.087 0.913 48 H 0.094 0.906 49 H 0.039 0.961 50 H 0.086 0.914 51 H 0.212 0.788 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.678 28.010 15.362 31.953 hybrid contribution -0.473 -0.884 -1.800 2.061 sum 0.205 27.125 13.562 30.327 Atomic orbital electron populations 1.22437 0.87618 1.01567 1.00844 1.61962 1.08110 1.13659 1.42830 1.22237 1.00037 0.87419 0.97545 1.21499 1.01046 0.94382 0.96564 1.21149 0.95115 0.95318 0.98475 1.21630 1.00812 0.94143 0.97944 1.22368 0.84392 0.98429 1.02321 1.58748 1.09051 1.16202 1.36641 1.19508 0.93893 0.88848 0.93782 1.22484 1.02213 0.92633 1.08069 1.22992 0.90709 0.97741 0.92989 1.67759 1.06738 1.34495 1.15925 1.22970 1.01006 0.87502 0.93071 1.21991 0.94064 0.99932 1.06717 1.22251 1.00956 0.94995 0.87956 1.21708 0.95391 0.95021 1.02878 1.22490 0.99496 0.94923 0.90567 1.19506 0.93883 0.89342 0.82238 0.93431 1.86588 1.24917 1.85608 1.40712 1.21876 1.37002 0.93718 1.07960 0.94614 1.25852 0.95267 0.98504 0.97515 1.70084 1.46963 1.08347 1.32503 0.85992 0.77480 0.76741 0.83533 1.21228 1.22435 1.12625 0.95897 0.92902 0.89554 0.95470 0.90998 0.91798 0.91475 0.91161 0.91438 0.89645 0.92803 0.89131 0.82874 0.80894 0.80880 0.83629 0.89438 0.93685 0.91300 0.90643 0.96054 0.91422 0.78814 0.92476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.67 9.13 127.69 1.17 1.84 16 2 N -0.54 -16.89 4.63 -922.47 -4.27 -21.16 16 3 C 0.06 1.32 4.72 86.30 0.41 1.72 16 4 C -0.10 -1.79 4.61 30.59 0.14 -1.65 16 5 C -0.08 -1.16 2.25 -10.71 -0.02 -1.19 16 6 C -0.11 -1.30 5.38 30.65 0.16 -1.14 16 7 C 0.05 0.59 4.16 86.33 0.36 0.95 16 8 N -0.49 -7.10 4.70 -694.80 -3.26 -10.37 16 9 C 0.15 2.26 5.65 38.58 0.22 2.47 16 10 C -0.23 -3.13 8.88 22.49 0.20 -2.93 16 11 C 0.11 1.64 11.17 84.59 0.94 2.59 16 12 N -0.54 -9.82 10.36 -196.15 -2.03 -11.85 16 13 C 0.11 1.68 11.17 84.58 0.94 2.63 16 14 C -0.20 -3.02 9.25 22.48 0.21 -2.81 16 15 C 0.06 0.87 5.26 86.33 0.45 1.32 16 16 C -0.11 -1.65 5.08 30.65 0.16 -1.50 16 17 C 0.05 2.03 4.56 86.30 0.39 2.43 16 18 C 0.21 9.51 2.19 29.85 0.07 9.58 16 19 H 0.05 2.24 5.90 -2.39 -0.01 2.23 16 20 O -0.57 -25.15 10.01 -148.98 -1.49 -26.64 16 21 C -0.57 -31.72 9.34 25.60 0.24 -31.48 16 22 H 0.04 2.19 7.99 -2.91 -0.02 2.17 16 23 C 0.03 1.63 5.47 84.66 0.46 2.10 16 24 N -0.94 -58.33 13.96 21.45 0.30 -58.04 16 25 Si 0.94 45.24 26.99 68.60 1.85 47.09 16 26 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 27 H -0.30 -14.32 7.11 99.48 0.71 -13.61 16 28 H -0.20 -9.44 5.30 99.48 0.53 -8.91 16 29 H 0.02 0.62 8.14 -2.38 -0.02 0.60 16 30 H 0.05 1.72 6.30 -2.39 -0.02 1.71 16 31 H 0.09 2.02 6.47 -2.39 -0.02 2.00 16 32 H 0.03 0.64 8.12 -2.39 -0.02 0.62 16 33 H 0.07 1.71 6.43 -2.39 -0.02 1.69 16 34 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.07 1.19 6.55 -2.38 -0.02 1.17 16 36 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 37 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.57 7.76 -2.39 -0.02 0.55 16 40 H 0.09 0.92 7.04 -2.39 -0.02 0.90 16 41 H 0.15 1.43 5.97 -2.91 -0.02 1.42 16 42 H 0.17 1.59 8.06 -2.91 -0.02 1.57 16 43 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.15 1.75 7.24 -2.91 -0.02 1.73 16 45 H 0.09 1.11 6.78 -2.39 -0.02 1.10 16 46 H 0.04 0.62 8.14 -2.38 -0.02 0.61 16 47 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 48 H 0.08 1.15 6.71 -2.39 -0.02 1.13 16 49 H 0.02 0.84 8.12 -2.39 -0.02 0.82 16 50 H 0.07 2.55 7.93 -2.39 -0.02 2.53 16 51 H 0.36 14.41 9.04 -74.06 -0.67 13.74 16 52 H 0.27 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -69.09 394.19 -2.35 -71.44 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: 0.06 Total: 24.61 kcal Atomic # 6 Polarization: -21.58 SS G_CDS: 6.50 Total: -15.08 kcal Atomic # 7 Polarization: -92.15 SS G_CDS: -9.27 Total: -101.42 kcal Atomic # 8 Polarization: -25.15 SS G_CDS: -1.49 Total: -26.64 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 1.85 Total: 47.09 kcal Total: -69.09 -2.35 -71.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000930170296.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.948 kcal (2) G-P(sol) polarization free energy of solvation -69.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds