Wall clock time and date at job start Tue Mar 31 2020 18:06:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46497 * 109.47105 * 2 1 4 4 C 1.36451 * 124.85373 * 264.97956 * 3 2 1 5 5 C 1.34490 * 108.85408 * 180.02562 * 4 3 2 6 6 C 1.46689 * 106.33361 * 359.97438 * 5 4 3 7 7 C 1.47259 * 126.94121 * 179.97438 * 6 5 4 8 8 O 1.21619 * 120.00309 * 180.02562 * 7 6 5 9 9 N 1.34783 * 119.99891 * 0.02833 * 7 6 5 10 10 C 1.46499 * 120.00076 * 179.97438 * 9 7 6 11 11 H 1.09004 * 109.44397 * 325.03402 * 10 9 7 12 12 C 1.53038 * 109.46159 * 84.99995 * 10 9 7 13 13 C 1.53187 * 109.31330 * 181.38879 * 12 10 9 14 14 N 1.46922 * 108.77666 * 305.36270 * 13 12 10 15 15 C 1.36938 * 120.63314 * 233.58882 * 14 13 12 16 16 H 1.08008 * 119.99858 * 151.74660 * 15 14 13 17 17 C 1.38813 * 120.00138 * 331.74213 * 15 14 13 18 18 N 1.31617 * 120.00100 * 160.51013 * 17 15 14 19 19 Si 1.86796 * 119.99709 * 340.51799 * 17 15 14 20 20 H 1.48497 * 109.47463 * 95.15600 * 19 17 15 21 21 H 1.48501 * 109.46961 * 215.15236 * 19 17 15 22 22 H 1.48502 * 109.47597 * 335.15225 * 19 17 15 23 23 C 1.46932 * 118.73875 * 53.86117 * 14 13 12 24 24 C 1.53038 * 109.46137 * 205.07118 * 10 9 7 25 25 C 1.52997 * 109.49545 * 298.56226 * 24 10 9 26 26 C 1.53001 * 109.49848 * 58.66160 * 24 10 9 27 27 C 1.34663 * 124.84867 * 85.31512 * 3 2 1 28 28 C 1.50698 * 125.80074 * 0.02562 * 27 3 2 29 29 H 1.08992 * 109.47074 * 59.99363 * 1 2 3 30 30 H 1.08992 * 109.46967 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46588 * 299.99609 * 1 2 3 32 32 H 1.09009 * 109.46538 * 240.00512 * 2 1 3 33 33 H 1.08992 * 109.47074 * 120.00637 * 2 1 3 34 34 H 1.07996 * 125.57115 * 0.04540 * 4 3 2 35 35 H 1.07995 * 126.82703 * 180.02562 * 5 4 3 36 36 H 0.97001 * 120.00015 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.49597 * 61.43528 * 12 10 9 38 38 H 1.09005 * 109.52179 * 301.35342 * 12 10 9 39 39 H 1.09000 * 109.59016 * 185.57774 * 13 12 10 40 40 H 1.09002 * 109.58973 * 65.15231 * 13 12 10 41 41 H 0.96996 * 119.99795 * 179.97438 * 18 17 15 42 42 H 1.08999 * 109.58641 * 65.92667 * 23 14 13 43 43 H 1.08999 * 109.58697 * 186.35333 * 23 14 13 44 44 H 1.09002 * 109.47270 * 60.00323 * 25 24 10 45 45 H 1.08997 * 109.47051 * 179.97438 * 25 24 10 46 46 H 1.09000 * 109.47535 * 299.99884 * 25 24 10 47 47 H 1.09003 * 109.47216 * 60.00240 * 26 24 10 48 48 H 1.09002 * 109.47025 * 180.02562 * 26 24 10 49 49 H 1.09002 * 109.47123 * 300.00218 * 26 24 10 50 50 H 1.09002 * 109.47180 * 270.18492 * 28 27 3 51 51 H 1.09000 * 109.47537 * 30.18728 * 28 27 3 52 52 H 1.09004 * 109.47508 * 150.18995 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3707 2.0837 -1.1154 5 6 2.7716 3.3132 -0.7461 6 6 2.6532 3.3641 0.7151 7 6 2.9756 4.5040 1.5900 8 8 2.8295 4.4073 2.7934 9 7 3.4328 5.6544 1.0569 10 6 3.7531 6.7885 1.9272 11 1 3.0557 6.8116 2.7646 12 6 5.1810 6.6376 2.4567 13 6 5.5002 7.8069 3.3935 14 7 5.2515 9.0665 2.6793 15 6 6.2243 10.0269 2.5991 16 1 6.2489 10.7016 1.7561 17 6 7.1788 10.1334 3.6014 18 7 8.3105 10.7636 3.3681 19 14 6.8571 9.3821 5.2810 20 1 7.4629 8.0276 5.3418 21 1 7.4601 10.2414 6.3314 22 1 5.3927 9.2799 5.5055 23 6 3.9371 9.2787 2.0578 24 6 3.6373 8.0906 1.1313 25 6 4.6402 8.0737 -0.0240 26 6 2.2183 8.2245 0.5748 27 6 2.1898 2.1367 1.1014 28 6 1.9144 1.7045 2.5186 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3632 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3334 1.7131 -2.1291 35 1 3.1120 4.1056 -1.3962 36 1 3.5490 5.7317 0.0970 37 1 5.8809 6.6393 1.6211 38 1 5.2693 5.6988 3.0035 39 1 6.5465 7.7583 3.6952 40 1 4.8609 7.7541 4.2748 41 1 8.9773 10.8383 4.0686 42 1 3.1729 9.3435 2.8324 43 1 3.9518 10.2015 1.4779 44 1 4.4269 7.2282 -0.6780 45 1 4.5570 9.0010 -0.5908 46 1 5.6508 7.9798 0.3734 47 1 1.5047 8.2378 1.3987 48 1 2.1365 9.1517 0.0077 49 1 2.0031 7.3790 -0.0787 50 1 0.8812 1.9384 2.7755 51 1 2.0771 0.6305 2.6091 52 1 2.5855 2.2320 3.1964 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940980358.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:50 Heat of formation + Delta-G solvation = 6.905363 kcal Electronic energy + Delta-G solvation = -30139.867977 eV Core-core repulsion = 26332.691350 eV Total energy + Delta-G solvation = -3807.176627 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.33366 -41.12471 -39.30749 -36.41690 -34.98551 -34.37435 -33.65437 -32.49634 -31.94941 -30.14589 -28.15838 -27.87827 -27.55306 -26.50078 -24.71630 -23.72454 -22.91134 -22.73034 -20.92224 -20.26367 -19.30788 -18.78908 -18.26713 -17.42539 -16.89632 -16.60127 -16.28795 -15.97670 -15.64243 -15.56228 -15.46595 -15.12839 -14.78621 -14.68794 -14.30654 -14.20527 -14.07572 -13.97466 -13.82515 -13.75234 -13.55868 -13.31827 -13.01413 -12.95824 -12.75830 -12.69499 -12.63524 -12.43954 -12.39666 -12.15663 -12.09360 -12.01721 -11.83229 -11.52005 -11.39697 -11.19510 -10.83105 -10.66286 -9.95989 -9.47766 -9.05743 -8.90403 -8.15465 -5.46959 0.80244 1.29168 1.39175 1.47980 1.56587 1.88806 2.41413 2.49244 2.65382 3.06197 3.34134 3.66765 3.82813 3.83974 3.89596 4.01011 4.05172 4.13541 4.19198 4.26045 4.34029 4.36714 4.43565 4.49970 4.53578 4.61743 4.68756 4.74728 4.79766 4.83919 4.87724 4.88707 4.92036 4.93870 5.01774 5.02686 5.10070 5.10683 5.18260 5.21919 5.24818 5.29405 5.33434 5.42251 5.65454 5.67772 5.85048 5.89191 6.15198 6.16574 6.41695 6.78800 6.91643 7.46084 7.62781 8.05496 9.04224 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021164 B = 0.002888 C = 0.002715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1322.672000 B = 9693.503771 C =10308.900527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.088 3.912 3 N -0.437 5.437 4 C -0.008 4.008 5 C -0.183 4.183 6 C -0.268 4.268 7 C 0.583 3.417 8 O -0.593 6.593 9 N -0.705 5.705 10 C 0.177 3.823 11 H 0.062 0.938 12 C -0.132 4.132 13 C 0.128 3.872 14 N -0.612 5.612 15 C -0.235 4.235 16 H 0.062 0.938 17 C -0.031 4.031 18 N -0.955 5.955 19 Si 0.936 3.064 20 H -0.285 1.285 21 H -0.310 1.310 22 H -0.264 1.264 23 C 0.156 3.844 24 C -0.078 4.078 25 C -0.126 4.126 26 C -0.129 4.129 27 C 0.094 3.906 28 C -0.089 4.089 29 H 0.059 0.941 30 H 0.096 0.904 31 H 0.049 0.951 32 H 0.118 0.882 33 H 0.098 0.902 34 H 0.201 0.799 35 H 0.158 0.842 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.052 0.948 39 H 0.049 0.951 40 H 0.023 0.977 41 H 0.260 0.740 42 H 0.028 0.972 43 H 0.068 0.932 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.042 0.958 47 H 0.049 0.951 48 H 0.069 0.931 49 H 0.068 0.932 50 H 0.077 0.923 51 H 0.086 0.914 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.290 -24.495 -12.975 33.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.113 5.113 4 C -0.134 4.134 5 C -0.206 4.206 6 C -0.278 4.278 7 C 0.374 3.626 8 O -0.476 6.476 9 N -0.355 5.355 10 C 0.071 3.929 11 H 0.080 0.920 12 C -0.172 4.172 13 C 0.003 3.997 14 N -0.336 5.336 15 C -0.364 4.364 16 H 0.079 0.921 17 C -0.226 4.226 18 N -0.601 5.601 19 Si 0.766 3.234 20 H -0.212 1.212 21 H -0.239 1.239 22 H -0.188 1.188 23 C 0.030 3.970 24 C -0.081 4.081 25 C -0.184 4.184 26 C -0.186 4.186 27 C -0.024 4.024 28 C -0.146 4.146 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.068 0.932 32 H 0.136 0.864 33 H 0.116 0.884 34 H 0.218 0.782 35 H 0.175 0.825 36 H 0.245 0.755 37 H 0.087 0.913 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.041 0.959 41 H 0.069 0.931 42 H 0.046 0.954 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.061 0.939 47 H 0.068 0.932 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.095 0.905 51 H 0.105 0.895 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -18.393 -24.835 -12.135 33.202 hybrid contribution 0.686 0.357 0.923 1.204 sum -17.707 -24.478 -11.212 32.225 Atomic orbital electron populations 1.22139 0.93681 1.04130 1.02433 1.22222 0.96058 0.78693 1.06207 1.44001 1.49258 1.12974 1.05038 1.22221 1.06094 0.92612 0.92470 1.22231 1.07537 0.98735 0.92098 1.20198 1.18106 0.94846 0.94687 1.17820 0.75458 0.82493 0.86837 1.90694 1.56742 1.83421 1.16769 1.45783 1.66479 1.12283 1.10988 1.20571 0.94487 0.85242 0.92556 0.92008 1.22286 0.97868 0.97275 0.99820 1.21240 0.98364 0.86139 0.94001 1.44434 1.11540 1.14012 1.63628 1.18860 1.04278 1.10375 1.02912 0.92067 1.25811 0.96574 0.99501 1.00714 1.69928 1.07305 1.48808 1.34088 0.86067 0.78487 0.76697 0.82160 1.21208 1.23913 1.18823 1.21265 0.85109 0.96498 0.94108 1.21261 0.97221 0.93578 0.95996 1.21717 0.98495 1.01683 0.96457 1.21734 0.93356 1.02738 1.00819 1.20420 1.00803 0.90802 0.90375 1.20476 1.02979 1.02038 0.89093 0.92156 0.88554 0.93216 0.86420 0.88385 0.78230 0.82483 0.75468 0.91309 0.92892 0.93293 0.95866 0.93083 0.95379 0.91395 0.91380 0.92428 0.93929 0.93177 0.91157 0.91324 0.90482 0.89499 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.00 10.24 71.98 0.74 -0.26 16 2 C 0.09 0.60 6.46 86.38 0.56 1.15 16 3 N -0.44 -6.47 2.69 -509.90 -1.37 -7.84 16 4 C -0.01 -0.11 11.33 83.12 0.94 0.83 16 5 C -0.18 -3.43 10.56 23.62 0.25 -3.18 16 6 C -0.27 -6.90 6.29 -19.04 -0.12 -7.02 16 7 C 0.58 18.53 7.77 86.61 0.67 19.20 16 8 O -0.59 -23.05 14.48 -4.09 -0.06 -23.11 16 9 N -0.70 -20.09 4.29 -445.83 -1.91 -22.00 16 10 C 0.18 5.96 1.57 45.02 0.07 6.03 16 11 H 0.06 2.37 7.57 -2.38 -0.02 2.35 16 12 C -0.13 -5.18 5.31 30.67 0.16 -5.02 16 13 C 0.13 5.94 4.18 86.36 0.36 6.30 16 14 N -0.61 -29.33 2.19 -698.25 -1.53 -30.85 16 15 C -0.23 -13.32 10.04 84.03 0.84 -12.48 16 16 H 0.06 3.72 8.06 -2.91 -0.02 3.70 16 17 C -0.03 -1.87 5.25 84.86 0.45 -1.42 16 18 N -0.95 -60.83 13.97 21.65 0.30 -60.53 16 19 Si 0.94 48.96 24.35 68.60 1.67 50.63 16 20 H -0.28 -14.52 6.73 99.48 0.67 -13.85 16 21 H -0.31 -16.37 7.11 99.48 0.71 -15.66 16 22 H -0.26 -13.41 6.41 99.48 0.64 -12.77 16 23 C 0.16 6.04 5.24 86.51 0.45 6.49 16 24 C -0.08 -2.42 0.56 -51.96 -0.03 -2.45 16 25 C -0.13 -3.76 7.84 71.98 0.56 -3.20 16 26 C -0.13 -3.11 8.31 71.98 0.60 -2.52 16 27 C 0.09 2.06 6.89 41.78 0.29 2.35 16 28 C -0.09 -1.79 9.51 71.24 0.68 -1.11 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.19 8.14 -2.39 -0.02 0.17 16 31 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 32 H 0.12 0.24 8.11 -2.38 -0.02 0.22 16 33 H 0.10 0.53 7.04 -2.39 -0.02 0.51 16 34 H 0.20 1.23 8.06 -2.91 -0.02 1.20 16 35 H 0.16 2.33 7.69 -2.91 -0.02 2.30 16 36 H 0.41 9.45 5.78 -92.71 -0.54 8.91 16 37 H 0.07 2.69 6.34 -2.39 -0.02 2.68 16 38 H 0.05 2.11 8.14 -2.38 -0.02 2.09 16 39 H 0.05 2.48 4.59 -2.39 -0.01 2.47 16 40 H 0.02 1.10 6.94 -2.39 -0.02 1.08 16 41 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 42 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.07 2.61 7.93 -2.39 -0.02 2.59 16 44 H 0.07 1.57 6.58 -2.39 -0.02 1.56 16 45 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 46 H 0.04 1.57 5.97 -2.39 -0.01 1.56 16 47 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 49 H 0.07 1.43 7.36 -2.39 -0.02 1.42 16 50 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 51 H 0.09 1.19 7.02 -2.39 -0.02 1.17 16 52 H 0.07 1.92 6.47 -2.39 -0.02 1.91 16 Total: -1.00 -76.38 392.65 4.85 -71.54 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: 0.27 Total: 18.45 kcal Atomic # 6 Polarization: -3.76 SS G_CDS: 7.47 Total: 3.71 kcal Atomic # 7 Polarization: -116.71 SS G_CDS: -4.51 Total: -121.22 kcal Atomic # 8 Polarization: -23.05 SS G_CDS: -0.06 Total: -23.11 kcal Atomic # 14 Polarization: 48.96 SS G_CDS: 1.67 Total: 50.63 kcal Total: -76.38 4.85 -71.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940980358.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.442 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.848 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.536 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds