Wall clock time and date at job start Tue Mar 31 2020 18:06:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47049 * 2 1 4 4 C 1.36453 * 124.84950 * 265.02633 * 3 2 1 5 5 C 1.34483 * 108.85801 * 179.68889 * 4 3 2 6 6 C 1.46694 * 106.32871 * 0.43160 * 5 4 3 7 7 C 1.47267 * 126.94244 * 179.83287 * 6 5 4 8 8 O 1.21619 * 120.00294 * 179.68697 * 7 6 5 9 9 N 1.34779 * 119.99679 * 359.68466 * 7 6 5 10 10 C 1.46498 * 119.99920 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45929 * 34.97393 * 10 9 7 12 12 C 1.53034 * 109.46291 * 275.00165 * 10 9 7 13 13 C 1.53194 * 109.34197 * 178.61053 * 12 10 9 14 14 N 1.46996 * 108.73502 * 54.61977 * 13 12 10 15 15 C 1.36941 * 120.60945 * 126.39059 * 14 13 12 16 16 H 1.08001 * 119.99555 * 207.95860 * 15 14 13 17 17 C 1.38807 * 120.00164 * 27.96379 * 15 14 13 18 18 N 1.31619 * 120.00400 * 17.50676 * 17 15 14 19 19 Si 1.86804 * 119.99994 * 197.51186 * 17 15 14 20 20 H 1.48498 * 109.47395 * 94.06483 * 19 17 15 21 21 H 1.48503 * 109.47149 * 214.06820 * 19 17 15 22 22 H 1.48508 * 109.46957 * 334.06462 * 19 17 15 23 23 C 1.46920 * 118.75725 * 306.41198 * 14 13 12 24 24 C 1.53042 * 109.44822 * 154.93726 * 10 9 7 25 25 C 1.52999 * 109.49911 * 301.33259 * 24 10 9 26 26 C 1.52998 * 109.49625 * 61.39760 * 24 10 9 27 27 C 1.34651 * 124.85340 * 84.99582 * 3 2 1 28 28 C 1.50704 * 125.80331 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47354 * 300.00446 * 1 2 3 30 30 H 1.08998 * 109.47125 * 60.00381 * 1 2 3 31 31 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47737 * 239.99847 * 2 1 3 33 33 H 1.08998 * 109.47125 * 119.99619 * 2 1 3 34 34 H 1.08006 * 125.57119 * 359.97221 * 4 3 2 35 35 H 1.08000 * 126.84039 * 180.26570 * 5 4 3 36 36 H 0.97004 * 120.00136 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.49787 * 298.58275 * 12 10 9 38 38 H 1.09003 * 109.49869 * 58.64344 * 12 10 9 39 39 H 1.08999 * 109.58736 * 174.43682 * 13 12 10 40 40 H 1.09000 * 109.58395 * 294.86565 * 13 12 10 41 41 H 0.96999 * 120.00323 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58839 * 293.81783 * 23 14 13 43 43 H 1.09002 * 109.70127 * 173.46736 * 23 14 13 44 44 H 1.08995 * 109.47275 * 60.00083 * 25 24 10 45 45 H 1.09002 * 109.47136 * 180.02562 * 25 24 10 46 46 H 1.09000 * 109.47466 * 300.00042 * 25 24 10 47 47 H 1.08998 * 109.47014 * 60.00135 * 26 24 10 48 48 H 1.09001 * 109.47192 * 179.97438 * 26 24 10 49 49 H 1.08998 * 109.47123 * 299.99825 * 26 24 10 50 50 H 1.09003 * 109.47021 * 270.00077 * 28 27 3 51 51 H 1.09004 * 109.46970 * 29.99706 * 28 27 3 52 52 H 1.08992 * 109.47411 * 149.99791 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0840 -1.1156 5 6 2.7639 3.3159 -0.7471 6 6 2.6525 3.3645 0.7148 7 6 2.9742 4.5047 1.5896 8 8 2.8286 4.4079 2.7931 9 7 3.4300 5.6555 1.0563 10 6 3.7495 6.7900 1.9264 11 1 4.1592 6.4220 2.8671 12 6 2.4771 7.5937 2.2042 13 6 2.8077 8.7590 3.1421 14 7 3.9015 9.5441 2.5522 15 6 3.7698 10.8947 2.3680 16 1 4.3141 11.3872 1.5758 17 6 2.9368 11.6306 3.1995 18 7 2.5481 11.1291 4.3526 19 14 2.3674 13.3327 2.6817 20 1 1.0480 13.2297 2.0080 21 1 2.2443 14.1997 3.8812 22 1 3.3572 13.9220 1.7445 23 6 5.1382 8.8527 2.1636 24 6 4.7807 7.6863 1.2370 25 6 6.0401 6.8734 0.9302 26 6 4.1939 8.2305 -0.0670 27 6 2.1839 2.1389 1.1008 28 6 1.9011 1.7094 2.5174 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3327 1.7132 -2.1293 35 1 3.0986 4.1103 -1.3976 36 1 3.5458 5.7328 0.0963 37 1 2.0805 7.9826 1.2664 38 1 1.7344 6.9484 2.6735 39 1 1.9279 9.3907 3.2641 40 1 3.1186 8.3705 4.1119 41 1 1.9663 11.6436 4.9338 42 1 5.6391 8.4720 3.0536 43 1 5.7979 9.5455 1.6412 44 1 5.7847 6.0420 0.2732 45 1 6.7744 7.5123 0.4396 46 1 6.4585 6.4868 1.8595 47 1 3.2975 8.8105 0.1522 48 1 4.9285 8.8691 -0.5574 49 1 3.9375 7.3998 -0.7245 50 1 0.8675 1.9468 2.7695 51 1 2.0601 0.6350 2.6099 52 1 2.5710 2.2357 3.1972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000940980359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:55 Heat of formation + Delta-G solvation = 22.031441 kcal Electronic energy + Delta-G solvation = -30041.880651 eV Core-core repulsion = 26235.359940 eV Total energy + Delta-G solvation = -3806.520712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.49936 -39.57577 -37.72866 -34.47841 -34.32397 -32.89953 -31.62102 -31.28213 -30.10984 -29.18843 -26.80895 -26.52403 -25.74276 -25.02317 -23.83887 -22.46987 -21.54053 -20.59721 -19.79396 -19.15934 -17.90726 -17.33259 -16.66468 -15.93087 -15.50039 -15.30064 -14.93294 -14.63348 -14.28540 -14.03413 -13.73860 -13.62394 -13.61135 -13.42971 -13.09202 -12.99614 -12.91898 -12.75267 -12.59805 -12.44956 -12.18126 -12.07649 -11.69486 -11.65496 -11.55020 -11.35221 -11.25011 -10.92774 -10.82152 -10.53163 -10.52170 -10.27222 -10.06171 -9.85810 -9.61003 -9.51833 -9.24314 -8.73493 -8.50073 -8.32499 -8.11637 -6.59017 -5.71363 -3.13504 1.82914 2.36157 2.61238 3.42150 3.49203 3.50437 3.79701 3.86763 4.25322 4.52661 4.55079 4.59358 4.73599 4.81121 5.11205 5.14273 5.15871 5.21120 5.36575 5.37619 5.44780 5.49796 5.52886 5.59140 5.60898 5.70810 5.83846 5.91407 5.98592 6.03572 6.07762 6.16756 6.25073 6.27624 6.38523 6.49750 6.57418 6.65859 6.70719 6.72466 6.80240 6.91167 6.93572 6.99973 7.09867 7.12765 7.19557 7.48753 7.76873 7.87009 8.06776 8.52119 8.77355 9.28340 9.92172 10.49388 11.36983 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002704 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.844355 B =10354.432660 C =10762.723236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.444 5.444 4 C -0.021 4.021 5 C -0.167 4.167 6 C -0.231 4.231 7 C 0.586 3.414 8 O -0.553 6.553 9 N -0.717 5.717 10 C 0.166 3.834 11 H 0.079 0.921 12 C -0.149 4.149 13 C 0.175 3.825 14 N -0.589 5.589 15 C -0.249 4.249 16 H 0.065 0.935 17 C 0.002 3.998 18 N -0.901 5.901 19 Si 0.900 3.100 20 H -0.289 1.289 21 H -0.292 1.292 22 H -0.279 1.279 23 C 0.160 3.840 24 C -0.088 4.088 25 C -0.136 4.136 26 C -0.130 4.130 27 C 0.102 3.898 28 C -0.093 4.093 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.163 0.837 35 H 0.143 0.857 36 H 0.393 0.607 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.087 0.913 40 H 0.019 0.981 41 H 0.253 0.747 42 H 0.019 0.981 43 H 0.056 0.944 44 H 0.048 0.952 45 H 0.052 0.948 46 H 0.051 0.949 47 H 0.074 0.926 48 H 0.048 0.952 49 H 0.034 0.966 50 H 0.075 0.925 51 H 0.058 0.942 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.787 -23.090 -12.005 26.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.121 5.121 4 C -0.147 4.147 5 C -0.191 4.191 6 C -0.240 4.240 7 C 0.375 3.625 8 O -0.433 6.433 9 N -0.367 5.367 10 C 0.063 3.937 11 H 0.097 0.903 12 C -0.189 4.189 13 C 0.048 3.952 14 N -0.311 5.311 15 C -0.379 4.379 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.545 5.545 19 Si 0.730 3.270 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.205 1.205 23 C 0.033 3.967 24 C -0.091 4.091 25 C -0.194 4.194 26 C -0.188 4.188 27 C -0.014 4.014 28 C -0.150 4.150 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.181 0.819 35 H 0.161 0.839 36 H 0.228 0.772 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.106 0.894 40 H 0.037 0.963 41 H 0.063 0.937 42 H 0.037 0.963 43 H 0.075 0.925 44 H 0.067 0.933 45 H 0.071 0.929 46 H 0.070 0.930 47 H 0.093 0.907 48 H 0.067 0.933 49 H 0.053 0.947 50 H 0.094 0.906 51 H 0.077 0.923 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -1.089 -23.373 -11.038 25.871 hybrid contribution -0.344 0.861 -0.914 1.301 sum -1.432 -22.512 -11.952 25.529 Atomic orbital electron populations 1.22172 0.94231 1.02987 1.03481 1.21860 0.95673 0.80631 1.04340 1.43709 1.50640 1.11846 1.05893 1.21615 1.08617 0.93314 0.91134 1.22001 1.06666 0.97020 0.93452 1.20272 1.15298 0.95062 0.93396 1.17330 0.76527 0.81729 0.86948 1.90723 1.54527 1.83131 1.14955 1.46076 1.66820 1.13068 1.10693 1.20928 0.95529 0.84273 0.93002 0.90269 1.22617 0.96255 0.98576 1.01465 1.20755 0.93078 0.89715 0.91611 1.44065 1.10374 1.04110 1.72527 1.19167 1.25769 0.83194 1.09787 0.91702 1.25034 1.02178 0.97638 0.94821 1.70047 1.37741 1.38000 1.08716 0.86312 0.78873 0.84303 0.77495 1.21580 1.21887 1.20462 1.20901 0.89686 0.91684 0.94478 1.21341 0.94105 0.96514 0.97139 1.21796 0.97316 0.99222 1.01045 1.21779 1.02220 0.99535 0.95224 1.20289 1.01048 0.90761 0.89298 1.20555 1.03793 1.00612 0.90010 0.91626 0.91767 0.90719 0.89079 0.89274 0.81927 0.83949 0.77212 0.92354 0.92948 0.89446 0.96277 0.93688 0.96340 0.92501 0.93337 0.92900 0.93033 0.90670 0.93271 0.94726 0.90645 0.92315 0.87950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.89 10.24 37.16 0.38 -0.51 16 2 C 0.10 0.55 6.45 -4.04 -0.03 0.52 16 3 N -0.44 -4.19 2.69 -112.52 -0.30 -4.49 16 4 C -0.02 -0.20 11.33 -16.82 -0.19 -0.39 16 5 C -0.17 -1.89 10.56 -37.50 -0.40 -2.29 16 6 C -0.23 -3.27 6.29 -103.35 -0.65 -3.92 16 7 C 0.59 9.96 7.77 -12.59 -0.10 9.87 16 8 O -0.55 -11.12 14.47 5.26 0.08 -11.04 16 9 N -0.72 -11.35 4.28 -54.89 -0.24 -11.59 16 10 C 0.17 3.06 1.57 -67.89 -0.11 2.96 16 11 H 0.08 1.65 7.57 -51.93 -0.39 1.26 16 12 C -0.15 -3.10 5.31 -26.61 -0.14 -3.24 16 13 C 0.17 4.33 5.31 -3.67 -0.02 4.31 16 14 N -0.59 -14.68 2.43 -172.27 -0.42 -15.10 16 15 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 16 H 0.07 1.74 7.89 -52.49 -0.41 1.32 16 17 C 0.00 0.05 4.90 -17.43 -0.09 -0.03 16 18 N -0.90 -26.57 11.22 55.49 0.62 -25.94 16 19 Si 0.90 21.89 29.59 -169.99 -5.03 16.86 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.16 3.36 5.19 -3.71 -0.02 3.34 16 24 C -0.09 -1.52 0.56 -154.39 -0.09 -1.61 16 25 C -0.14 -1.97 8.31 37.16 0.31 -1.66 16 26 C -0.13 -2.12 7.83 37.16 0.29 -1.83 16 27 C 0.10 1.26 6.89 -81.89 -0.56 0.69 16 28 C -0.09 -1.02 9.52 36.01 0.34 -0.68 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 32 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.09 0.43 7.05 -51.93 -0.37 0.06 16 34 H 0.16 1.00 8.06 -52.48 -0.42 0.57 16 35 H 0.14 1.36 7.70 -52.49 -0.40 0.96 16 36 H 0.39 5.37 5.78 -40.82 -0.24 5.13 16 37 H 0.06 1.20 6.34 -51.93 -0.33 0.87 16 38 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 39 H 0.09 2.41 6.07 -51.93 -0.32 2.10 16 40 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.17 7.94 -51.93 -0.41 0.76 16 44 H 0.05 0.64 7.36 -51.93 -0.38 0.25 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.43 5.98 -51.93 -0.31 1.12 16 48 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 49 H 0.03 0.47 6.58 -51.93 -0.34 0.13 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.38 16 51 H 0.06 0.48 7.02 -51.93 -0.36 0.11 16 52 H 0.10 1.38 6.47 -51.93 -0.34 1.04 16 LS Contribution 399.25 15.07 6.02 6.02 Total: -1.00 -32.66 399.25 -9.29 -41.94 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: -8.81 Total: 4.74 kcal Atomic # 6 Polarization: -0.20 SS G_CDS: -1.20 Total: -1.40 kcal Atomic # 7 Polarization: -56.79 SS G_CDS: -0.33 Total: -57.12 kcal Atomic # 8 Polarization: -11.12 SS G_CDS: 0.08 Total: -11.04 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.86 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -32.66 -9.29 -41.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940980359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.975 kcal (2) G-P(sol) polarization free energy of solvation -32.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds