Wall clock time and date at job start Tue Mar 31 2020 18:06:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46505 * 109.47049 * 2 1 4 4 C 1.36453 * 124.84950 * 265.02633 * 3 2 1 5 5 C 1.34483 * 108.85801 * 179.68889 * 4 3 2 6 6 C 1.46694 * 106.32871 * 0.43160 * 5 4 3 7 7 C 1.47267 * 126.94244 * 179.83287 * 6 5 4 8 8 O 1.21619 * 120.00294 * 179.68697 * 7 6 5 9 9 N 1.34779 * 119.99679 * 359.68466 * 7 6 5 10 10 C 1.46498 * 119.99920 * 179.97438 * 9 7 6 11 11 H 1.09006 * 109.45929 * 34.97393 * 10 9 7 12 12 C 1.53034 * 109.46291 * 275.00165 * 10 9 7 13 13 C 1.53194 * 109.34197 * 178.61053 * 12 10 9 14 14 N 1.46996 * 108.73502 * 54.61977 * 13 12 10 15 15 C 1.36941 * 120.60945 * 126.39059 * 14 13 12 16 16 H 1.08001 * 119.99555 * 207.95860 * 15 14 13 17 17 C 1.38807 * 120.00164 * 27.96379 * 15 14 13 18 18 N 1.31619 * 120.00400 * 17.50676 * 17 15 14 19 19 Si 1.86804 * 119.99994 * 197.51186 * 17 15 14 20 20 H 1.48498 * 109.47395 * 94.06483 * 19 17 15 21 21 H 1.48503 * 109.47149 * 214.06820 * 19 17 15 22 22 H 1.48508 * 109.46957 * 334.06462 * 19 17 15 23 23 C 1.46920 * 118.75725 * 306.41198 * 14 13 12 24 24 C 1.53042 * 109.44822 * 154.93726 * 10 9 7 25 25 C 1.52999 * 109.49911 * 301.33259 * 24 10 9 26 26 C 1.52998 * 109.49625 * 61.39760 * 24 10 9 27 27 C 1.34651 * 124.85340 * 84.99582 * 3 2 1 28 28 C 1.50704 * 125.80331 * 0.02562 * 27 3 2 29 29 H 1.08994 * 109.47354 * 300.00446 * 1 2 3 30 30 H 1.08998 * 109.47125 * 60.00381 * 1 2 3 31 31 H 1.09003 * 109.47148 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47737 * 239.99847 * 2 1 3 33 33 H 1.08998 * 109.47125 * 119.99619 * 2 1 3 34 34 H 1.08006 * 125.57119 * 359.97221 * 4 3 2 35 35 H 1.08000 * 126.84039 * 180.26570 * 5 4 3 36 36 H 0.97004 * 120.00136 * 0.02562 * 9 7 6 37 37 H 1.08999 * 109.49787 * 298.58275 * 12 10 9 38 38 H 1.09003 * 109.49869 * 58.64344 * 12 10 9 39 39 H 1.08999 * 109.58736 * 174.43682 * 13 12 10 40 40 H 1.09000 * 109.58395 * 294.86565 * 13 12 10 41 41 H 0.96999 * 120.00323 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.58839 * 293.81783 * 23 14 13 43 43 H 1.09002 * 109.70127 * 173.46736 * 23 14 13 44 44 H 1.08995 * 109.47275 * 60.00083 * 25 24 10 45 45 H 1.09002 * 109.47136 * 180.02562 * 25 24 10 46 46 H 1.09000 * 109.47466 * 300.00042 * 25 24 10 47 47 H 1.08998 * 109.47014 * 60.00135 * 26 24 10 48 48 H 1.09001 * 109.47192 * 179.97438 * 26 24 10 49 49 H 1.08998 * 109.47123 * 299.99825 * 26 24 10 50 50 H 1.09003 * 109.47021 * 270.00077 * 28 27 3 51 51 H 1.09004 * 109.46970 * 29.99706 * 28 27 3 52 52 H 1.08992 * 109.47411 * 149.99791 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3697 2.0840 -1.1156 5 6 2.7639 3.3159 -0.7471 6 6 2.6525 3.3645 0.7148 7 6 2.9742 4.5047 1.5896 8 8 2.8286 4.4079 2.7931 9 7 3.4300 5.6555 1.0563 10 6 3.7495 6.7900 1.9264 11 1 4.1592 6.4220 2.8671 12 6 2.4771 7.5937 2.2042 13 6 2.8077 8.7590 3.1421 14 7 3.9015 9.5441 2.5522 15 6 3.7698 10.8947 2.3680 16 1 4.3141 11.3872 1.5758 17 6 2.9368 11.6306 3.1995 18 7 2.5481 11.1291 4.3526 19 14 2.3674 13.3327 2.6817 20 1 1.0480 13.2297 2.0080 21 1 2.2443 14.1997 3.8812 22 1 3.3572 13.9220 1.7445 23 6 5.1382 8.8527 2.1636 24 6 4.7807 7.6863 1.2370 25 6 6.0401 6.8734 0.9302 26 6 4.1939 8.2305 -0.0670 27 6 2.1839 2.1389 1.1008 28 6 1.9011 1.7094 2.5174 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 2.3327 1.7132 -2.1293 35 1 3.0986 4.1103 -1.3976 36 1 3.5458 5.7328 0.0963 37 1 2.0805 7.9826 1.2664 38 1 1.7344 6.9484 2.6735 39 1 1.9279 9.3907 3.2641 40 1 3.1186 8.3705 4.1119 41 1 1.9663 11.6436 4.9338 42 1 5.6391 8.4720 3.0536 43 1 5.7979 9.5455 1.6412 44 1 5.7847 6.0420 0.2732 45 1 6.7744 7.5123 0.4396 46 1 6.4585 6.4868 1.8595 47 1 3.2975 8.8105 0.1522 48 1 4.9285 8.8691 -0.5574 49 1 3.9375 7.3998 -0.7245 50 1 0.8675 1.9468 2.7695 51 1 2.0601 0.6350 2.6099 52 1 2.5710 2.2357 3.1972 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000940980359.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:54 Heat of formation + Delta-G solvation = 3.583379 kcal Electronic energy + Delta-G solvation = -30042.680619 eV Core-core repulsion = 26235.359940 eV Total energy + Delta-G solvation = -3807.320680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.32461 -41.03527 -39.21531 -36.27933 -34.98067 -34.36223 -33.18905 -32.48989 -31.72440 -30.11696 -28.11960 -27.56270 -27.44660 -26.55821 -24.79190 -23.77614 -22.73230 -22.43532 -20.90738 -20.20643 -19.22657 -18.71897 -18.22019 -17.09385 -16.86285 -16.57498 -16.20902 -15.76743 -15.60434 -15.54839 -15.32371 -15.02293 -14.79485 -14.56902 -14.28607 -14.16545 -14.05781 -13.81060 -13.75568 -13.57575 -13.13066 -13.09066 -12.96998 -12.81770 -12.74605 -12.69300 -12.52731 -12.39223 -12.26888 -12.25428 -12.09069 -12.05401 -11.92907 -11.57459 -11.30738 -11.13533 -10.72909 -10.53804 -9.92066 -9.46634 -9.04906 -8.67018 -7.84499 -5.30052 0.81012 1.47835 1.49352 1.57363 1.58550 1.90024 2.52449 2.52970 2.66757 3.30790 3.64823 3.74487 3.83840 3.84654 4.01505 4.04904 4.09208 4.14074 4.20116 4.36869 4.42935 4.44177 4.48583 4.61461 4.66947 4.68675 4.72967 4.83715 4.86114 4.87881 4.88095 4.97102 5.01357 5.05207 5.06385 5.10499 5.14234 5.22781 5.24699 5.29684 5.35917 5.42103 5.44708 5.62527 5.67398 5.70575 5.75505 5.85458 6.17102 6.40396 6.42891 6.81446 7.15268 7.48832 7.86382 8.40607 9.22610 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020754 B = 0.002704 C = 0.002601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1348.844355 B =10354.432660 C =10762.723236 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.436 5.436 4 C -0.006 4.006 5 C -0.183 4.183 6 C -0.268 4.268 7 C 0.580 3.420 8 O -0.596 6.596 9 N -0.704 5.704 10 C 0.179 3.821 11 H 0.049 0.951 12 C -0.132 4.132 13 C 0.187 3.813 14 N -0.601 5.601 15 C -0.253 4.253 16 H 0.073 0.927 17 C -0.056 4.056 18 N -0.939 5.939 19 Si 0.967 3.033 20 H -0.288 1.288 21 H -0.299 1.299 22 H -0.264 1.264 23 C 0.155 3.845 24 C -0.077 4.077 25 C -0.128 4.128 26 C -0.124 4.124 27 C 0.094 3.906 28 C -0.089 4.089 29 H 0.046 0.954 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.120 0.880 33 H 0.099 0.901 34 H 0.203 0.797 35 H 0.158 0.842 36 H 0.408 0.592 37 H 0.065 0.935 38 H 0.039 0.961 39 H 0.055 0.945 40 H -0.015 1.015 41 H 0.248 0.752 42 H 0.005 0.995 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.071 0.929 46 H 0.042 0.958 47 H 0.044 0.956 48 H 0.061 0.939 49 H 0.066 0.934 50 H 0.073 0.927 51 H 0.089 0.911 52 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.228 -25.251 -16.025 29.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.031 4.031 3 N -0.112 5.112 4 C -0.132 4.132 5 C -0.206 4.206 6 C -0.278 4.278 7 C 0.371 3.629 8 O -0.479 6.479 9 N -0.354 5.354 10 C 0.074 3.926 11 H 0.067 0.933 12 C -0.172 4.172 13 C 0.060 3.940 14 N -0.323 5.323 15 C -0.383 4.383 16 H 0.091 0.909 17 C -0.250 4.250 18 N -0.586 5.586 19 Si 0.796 3.204 20 H -0.215 1.215 21 H -0.226 1.226 22 H -0.188 1.188 23 C 0.029 3.971 24 C -0.079 4.079 25 C -0.186 4.186 26 C -0.182 4.182 27 C -0.025 4.025 28 C -0.146 4.146 29 H 0.066 0.934 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.138 0.862 33 H 0.117 0.883 34 H 0.219 0.781 35 H 0.176 0.824 36 H 0.245 0.755 37 H 0.084 0.916 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.003 0.997 41 H 0.057 0.943 42 H 0.022 0.978 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.063 0.937 48 H 0.080 0.920 49 H 0.085 0.915 50 H 0.091 0.909 51 H 0.108 0.892 52 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.507 -25.568 -15.128 29.713 hybrid contribution -0.519 1.411 0.351 1.544 sum -1.026 -24.157 -14.777 28.337 Atomic orbital electron populations 1.22151 0.93912 1.04133 1.02331 1.22223 0.95875 0.78658 1.06328 1.44000 1.49284 1.12942 1.05024 1.22231 1.06095 0.92461 0.92455 1.22233 1.07776 0.98677 0.91936 1.20207 1.18059 0.94780 0.94762 1.17887 0.75602 0.82534 0.86858 1.90701 1.56300 1.83905 1.17011 1.45794 1.66688 1.12012 1.10952 1.20535 0.94324 0.84962 0.92765 0.93292 1.22364 0.97402 0.97077 1.00401 1.20430 0.91953 0.90344 0.91286 1.44241 1.11704 1.03898 1.72494 1.19535 1.25180 0.84180 1.09375 0.90902 1.25843 1.02838 1.01507 0.94855 1.70222 1.38793 1.39537 1.10023 0.85247 0.78450 0.79827 0.76904 1.21505 1.22566 1.18785 1.21090 0.88218 0.92989 0.94833 1.21177 0.95184 0.94974 0.96589 1.21736 0.95903 0.99653 1.01330 1.21711 1.01074 1.00507 0.94868 1.20397 1.00778 0.90877 0.90407 1.20473 1.02786 1.02146 0.89206 0.93436 0.92235 0.88453 0.86183 0.88288 0.78051 0.82399 0.75486 0.91615 0.94232 0.92689 0.99693 0.94295 0.97753 0.91624 0.91260 0.90969 0.93848 0.93682 0.91995 0.91486 0.90873 0.89241 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 71.98 0.74 -0.52 16 2 C 0.09 0.67 6.45 86.38 0.56 1.23 16 3 N -0.44 -6.94 2.69 -509.90 -1.37 -8.31 16 4 C -0.01 -0.09 11.33 83.11 0.94 0.85 16 5 C -0.18 -3.65 10.56 23.62 0.25 -3.40 16 6 C -0.27 -7.41 6.29 -19.04 -0.12 -7.52 16 7 C 0.58 20.14 7.77 86.62 0.67 20.81 16 8 O -0.60 -25.39 14.47 -4.09 -0.06 -25.45 16 9 N -0.70 -22.06 4.28 -445.83 -1.91 -23.97 16 10 C 0.18 6.76 1.57 45.02 0.07 6.83 16 11 H 0.05 2.16 7.57 -2.38 -0.02 2.15 16 12 C -0.13 -5.77 5.31 30.67 0.16 -5.61 16 13 C 0.19 9.86 5.31 86.35 0.46 10.32 16 14 N -0.60 -30.98 2.43 -698.93 -1.70 -32.68 16 15 C -0.25 -13.99 9.58 84.03 0.81 -13.19 16 16 H 0.07 3.87 7.89 -2.91 -0.02 3.84 16 17 C -0.06 -3.18 4.90 84.86 0.42 -2.76 16 18 N -0.94 -58.01 11.22 21.65 0.24 -57.77 16 19 Si 0.97 45.87 29.59 68.60 2.03 47.90 16 20 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 21 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 22 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 23 C 0.15 6.58 5.19 86.36 0.45 7.02 16 24 C -0.08 -2.58 0.56 -52.10 -0.03 -2.61 16 25 C -0.13 -3.43 8.31 71.98 0.60 -2.83 16 26 C -0.12 -3.76 7.83 71.98 0.56 -3.20 16 27 C 0.09 2.21 6.89 41.78 0.29 2.49 16 28 C -0.09 -1.96 9.52 71.24 0.68 -1.29 16 29 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.10 0.30 8.14 -2.39 -0.02 0.28 16 32 H 0.12 0.29 8.11 -2.39 -0.02 0.27 16 33 H 0.10 0.59 7.05 -2.39 -0.02 0.58 16 34 H 0.20 1.33 8.06 -2.91 -0.02 1.31 16 35 H 0.16 2.49 7.70 -2.91 -0.02 2.46 16 36 H 0.41 10.28 5.78 -92.71 -0.54 9.74 16 37 H 0.07 2.77 6.34 -2.39 -0.02 2.75 16 38 H 0.04 1.79 8.14 -2.39 -0.02 1.78 16 39 H 0.05 3.25 6.07 -2.39 -0.01 3.23 16 40 H -0.02 -0.88 8.14 -2.39 -0.02 -0.90 16 41 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 42 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 43 H 0.07 2.65 7.94 -2.39 -0.02 2.63 16 44 H 0.07 1.59 7.36 -2.39 -0.02 1.57 16 45 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 46 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 47 H 0.04 1.65 5.98 -2.39 -0.01 1.64 16 48 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 49 H 0.07 1.58 6.58 -2.39 -0.02 1.57 16 50 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.09 1.33 7.02 -2.39 -0.02 1.31 16 52 H 0.07 2.06 6.47 -2.39 -0.02 2.04 16 Total: -1.00 -76.50 399.25 5.10 -71.40 By element: Atomic # 1 Polarization: 21.88 SS G_CDS: 0.37 Total: 22.25 kcal Atomic # 6 Polarization: -0.86 SS G_CDS: 7.50 Total: 6.63 kcal Atomic # 7 Polarization: -117.99 SS G_CDS: -4.74 Total: -122.73 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: -0.06 Total: -25.45 kcal Atomic # 14 Polarization: 45.87 SS G_CDS: 2.03 Total: 47.90 kcal Total: -76.50 5.10 -71.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000940980359.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.980 kcal (2) G-P(sol) polarization free energy of solvation -76.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.397 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.583 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds