Wall clock time and date at job start Tue Mar 31 2020 18:06:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46501 * 109.46884 * 2 1 4 4 C 1.36454 * 124.84551 * 269.97314 * 3 2 1 5 5 C 1.50698 * 125.57222 * 0.02562 * 4 3 2 6 6 C 1.34485 * 108.85340 * 179.73187 * 4 3 2 7 7 C 1.46694 * 106.33164 * 0.43613 * 6 4 3 8 8 C 1.47260 * 126.94093 * 179.82619 * 7 6 4 9 9 O 1.21628 * 119.99925 * 179.68414 * 8 7 6 10 10 N 1.34779 * 120.00270 * 359.69015 * 8 7 6 11 11 C 1.46501 * 120.00251 * 179.97438 * 10 8 7 12 12 H 1.08995 * 109.46029 * 35.02550 * 11 10 8 13 13 C 1.53036 * 109.44778 * 275.05640 * 11 10 8 14 14 C 1.53189 * 109.31463 * 301.35280 * 13 11 10 15 15 N 1.46921 * 108.77587 * 305.36375 * 14 13 11 16 16 C 1.36934 * 120.63047 * 233.63119 * 15 14 13 17 17 H 1.08003 * 120.00338 * 27.67480 * 16 15 14 18 18 C 1.38822 * 120.00137 * 207.67903 * 16 15 14 19 19 N 1.31615 * 119.99603 * 17.34873 * 18 16 15 20 20 Si 1.86803 * 119.99991 * 197.35289 * 18 16 15 21 21 H 1.48502 * 109.46953 * 59.99694 * 20 18 16 22 22 H 1.48503 * 109.46924 * 179.97438 * 20 18 16 23 23 H 1.48493 * 109.46933 * 299.99575 * 20 18 16 24 24 C 1.46927 * 118.74068 * 53.61137 * 15 14 13 25 25 C 1.53043 * 109.45840 * 154.99752 * 11 10 8 26 26 H 1.09001 * 109.49397 * 178.59440 * 25 11 10 27 27 C 1.53001 * 109.49860 * 298.65782 * 25 11 10 28 28 C 1.34653 * 124.85720 * 89.99663 * 3 2 1 29 29 C 1.50699 * 125.79693 * 359.96037 * 28 3 2 30 30 H 1.08999 * 109.46653 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47283 * 300.00286 * 1 2 3 32 32 H 1.08998 * 109.46693 * 60.00264 * 1 2 3 33 33 H 1.08992 * 109.47104 * 239.99345 * 2 1 3 34 34 H 1.09001 * 109.46894 * 119.99255 * 2 1 3 35 35 H 1.08999 * 109.47387 * 90.00295 * 5 4 3 36 36 H 1.09000 * 109.47157 * 210.00195 * 5 4 3 37 37 H 1.08998 * 109.47035 * 330.00034 * 5 4 3 38 38 H 1.08003 * 126.83598 * 180.26362 * 6 4 3 39 39 H 0.97001 * 119.99863 * 359.97438 * 10 8 7 40 40 H 1.09008 * 109.49702 * 61.30152 * 13 11 10 41 41 H 1.08994 * 109.50016 * 181.39597 * 13 11 10 42 42 H 1.08998 * 109.58963 * 65.15156 * 14 13 11 43 43 H 1.09002 * 109.58541 * 185.43137 * 14 13 11 44 44 H 0.97006 * 119.99566 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.58766 * 186.60614 * 24 15 14 46 46 H 1.09002 * 109.59065 * 66.17514 * 24 15 14 47 47 H 1.08999 * 109.47133 * 59.93536 * 27 25 11 48 48 H 1.09000 * 109.46965 * 179.97438 * 27 25 11 49 49 H 1.08997 * 109.46883 * 299.93466 * 27 25 11 50 50 H 1.09004 * 109.47083 * 269.99314 * 29 28 3 51 51 H 1.09004 * 109.47716 * 29.99711 * 29 28 3 52 52 H 1.09005 * 109.47446 * 150.00125 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2787 2.1161 -1.1199 5 6 2.1105 1.6399 -2.5397 6 6 2.7038 3.3371 -0.7494 7 6 2.7125 3.3433 0.7175 8 6 3.1067 4.4578 1.5955 9 8 3.0597 4.3261 2.8037 10 7 3.5194 5.6239 1.0603 11 6 3.9111 6.7329 1.9338 12 1 4.3966 6.3382 2.8263 13 6 2.6668 7.5264 2.3388 14 6 1.9681 8.0504 1.0803 15 7 2.9382 8.8143 0.2841 16 6 2.6630 10.0973 -0.1075 17 1 2.0016 10.7126 0.4844 18 6 3.2342 10.6071 -1.2655 19 7 3.7503 9.7904 -2.1593 20 14 3.2703 12.4522 -1.5550 21 1 4.0289 13.1102 -0.4610 22 1 3.9300 12.7365 -2.8548 23 1 1.8813 12.9767 -1.5792 24 6 4.2093 8.1758 -0.0834 25 6 4.8830 7.6504 1.1882 26 1 5.1553 8.4892 1.8288 27 6 6.1411 6.8647 0.8131 28 6 2.2748 2.1069 1.1049 29 6 2.1075 1.6365 2.5268 30 1 -0.3632 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8899 34 1 1.8934 -0.5137 0.8901 35 1 1.1012 1.8680 -2.8823 36 1 2.8342 2.1441 -3.1802 37 1 2.2745 0.5632 -2.5836 38 1 2.9857 4.1502 -1.4019 39 1 3.5572 5.7289 0.0967 40 1 1.9854 6.8783 2.8901 41 1 2.9600 8.3664 2.9686 42 1 1.5942 7.2112 0.4937 43 1 1.1372 8.6957 1.3655 44 1 4.1498 10.1467 -2.9684 45 1 4.8589 8.9059 -0.5660 46 1 4.0183 7.3467 -0.7649 47 1 5.8683 6.0260 0.1726 48 1 6.8328 7.5185 0.2817 49 1 6.6189 6.4902 1.7184 50 1 1.0985 1.8663 2.8692 51 1 2.2713 0.5599 2.5752 52 1 2.8318 2.1432 3.1648 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942368473.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:58 Heat of formation + Delta-G solvation = -1.165512 kcal Electronic energy + Delta-G solvation = -30221.688385 eV Core-core repulsion = 26414.161778 eV Total energy + Delta-G solvation = -3807.526607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45407 -40.85546 -38.87594 -35.86638 -35.00682 -33.65972 -33.53984 -33.45451 -31.42500 -30.19675 -29.85774 -27.51968 -27.11990 -25.81825 -24.62191 -23.78404 -22.82693 -22.46970 -21.12069 -20.05774 -19.54967 -18.62911 -18.01177 -16.93646 -16.79995 -16.48871 -16.26548 -15.90251 -15.69370 -15.52182 -15.23048 -14.77815 -14.64131 -14.52559 -14.34822 -14.20204 -14.05610 -13.96800 -13.67451 -13.57190 -13.44901 -13.15667 -13.06899 -12.91238 -12.87242 -12.74869 -12.51766 -12.50563 -12.44919 -12.22305 -12.18587 -12.07519 -11.78100 -11.68571 -11.42394 -11.10549 -10.72760 -10.51908 -9.91313 -9.47792 -8.90018 -8.64572 -7.85014 -5.29319 0.81147 1.44633 1.48377 1.50553 1.57171 1.85978 2.52020 2.56438 2.66427 3.29013 3.68100 3.78452 3.79967 3.85252 3.91612 4.08242 4.11799 4.15797 4.21513 4.32175 4.36705 4.41539 4.50504 4.60291 4.63781 4.69845 4.71780 4.76107 4.77510 4.81152 4.86656 4.87861 4.96822 4.98541 5.06556 5.08145 5.10991 5.14398 5.18610 5.25057 5.30333 5.35458 5.38659 5.52793 5.66429 5.74360 5.77991 5.86242 6.17419 6.41234 6.41535 6.78332 7.17444 7.45622 7.87255 8.40166 9.20633 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015845 B = 0.003126 C = 0.002891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1766.739846 B = 8955.490977 C = 9681.613695 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 N -0.432 5.432 4 C 0.017 3.983 5 C -0.080 4.080 6 C -0.192 4.192 7 C -0.266 4.266 8 C 0.586 3.414 9 O -0.589 6.589 10 N -0.705 5.705 11 C 0.168 3.832 12 H 0.075 0.925 13 C -0.133 4.133 14 C 0.152 3.848 15 N -0.606 5.606 16 C -0.266 4.266 17 H 0.062 0.938 18 C -0.044 4.044 19 N -0.928 5.928 20 Si 0.965 3.035 21 H -0.280 1.280 22 H -0.292 1.292 23 H -0.279 1.279 24 C 0.191 3.809 25 C -0.116 4.116 26 H 0.072 0.928 27 C -0.130 4.130 28 C 0.100 3.900 29 C -0.084 4.084 30 H 0.100 0.900 31 H 0.050 0.950 32 H 0.055 0.945 33 H 0.113 0.887 34 H 0.107 0.893 35 H 0.078 0.922 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.136 0.864 39 H 0.400 0.600 40 H 0.058 0.942 41 H 0.068 0.932 42 H 0.009 0.991 43 H 0.047 0.953 44 H 0.250 0.750 45 H 0.058 0.942 46 H 0.003 0.997 47 H 0.051 0.949 48 H 0.056 0.944 49 H 0.063 0.937 50 H 0.076 0.924 51 H 0.091 0.909 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.274 -23.136 2.657 23.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 N -0.108 5.108 4 C -0.091 4.091 5 C -0.137 4.137 6 C -0.215 4.215 7 C -0.276 4.276 8 C 0.377 3.623 9 O -0.473 6.473 10 N -0.355 5.355 11 C 0.064 3.936 12 H 0.093 0.907 13 C -0.173 4.173 14 C 0.026 3.974 15 N -0.330 5.330 16 C -0.396 4.396 17 H 0.079 0.921 18 C -0.240 4.240 19 N -0.574 5.574 20 Si 0.793 3.207 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.204 1.204 24 C 0.066 3.934 25 C -0.136 4.136 26 H 0.090 0.910 27 C -0.188 4.188 28 C -0.018 4.018 29 C -0.142 4.142 30 H 0.119 0.881 31 H 0.069 0.931 32 H 0.074 0.926 33 H 0.131 0.869 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.154 0.846 39 H 0.236 0.764 40 H 0.077 0.923 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.065 0.935 44 H 0.060 0.940 45 H 0.076 0.924 46 H 0.021 0.979 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.082 0.918 50 H 0.095 0.905 51 H 0.109 0.891 52 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -2.369 -23.502 3.295 23.849 hybrid contribution -0.022 1.616 -0.844 1.824 sum -2.391 -21.885 2.451 22.151 Atomic orbital electron populations 1.22134 0.93606 1.04245 1.02329 1.22240 0.96148 0.78701 1.06301 1.43877 1.49883 1.12978 1.04084 1.20604 1.06464 0.91882 0.90197 1.20414 1.03484 1.02398 0.87409 1.21910 1.08887 0.97924 0.92795 1.20196 1.18120 0.95504 0.93776 1.17670 0.75660 0.82006 0.86929 1.90641 1.57486 1.83445 1.15691 1.45877 1.66685 1.12409 1.10505 1.20706 0.94397 0.85732 0.92796 0.90652 1.22230 0.97819 0.99137 0.98110 1.20851 0.91736 0.93595 0.91233 1.44266 1.14773 1.12326 1.61588 1.19435 1.27517 0.89102 1.03590 0.92058 1.25706 1.01896 1.01646 0.94789 1.70156 1.43862 1.34387 1.08970 0.85393 0.77796 0.80955 0.76579 1.20601 1.21833 1.20449 1.20569 0.86640 0.94602 0.91626 1.21936 0.95249 0.97437 0.98984 0.90962 1.21637 0.96233 0.99532 1.01409 1.20455 1.00219 0.90759 0.90390 1.20495 1.03539 1.01973 0.88150 0.88128 0.93123 0.92605 0.86888 0.87522 0.90368 0.89804 0.89532 0.84642 0.76369 0.92296 0.91329 0.97294 0.93479 0.94044 0.92361 0.97920 0.93031 0.92510 0.91848 0.90499 0.89068 0.90384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.61 10.24 71.99 0.74 -0.88 16 2 C 0.09 0.92 6.30 86.38 0.54 1.46 16 3 N -0.43 -8.77 2.69 -495.48 -1.33 -10.10 16 4 C 0.02 0.38 6.85 40.98 0.28 0.66 16 5 C -0.08 -1.17 10.06 71.24 0.72 -0.45 16 6 C -0.19 -5.60 10.45 23.62 0.25 -5.36 16 7 C -0.27 -8.61 6.29 -19.04 -0.12 -8.73 16 8 C 0.59 21.67 7.77 86.61 0.67 22.34 16 9 O -0.59 -23.82 14.48 -4.12 -0.06 -23.88 16 10 N -0.70 -25.76 3.59 -445.83 -1.60 -27.36 16 11 C 0.17 6.27 2.21 45.02 0.10 6.37 16 12 H 0.08 2.80 7.58 -2.39 -0.02 2.78 16 13 C -0.13 -5.19 5.77 30.67 0.18 -5.01 16 14 C 0.15 6.80 6.25 86.36 0.54 7.34 16 15 N -0.61 -30.92 2.99 -699.10 -2.09 -33.02 16 16 C -0.27 -14.86 9.59 84.04 0.81 -14.06 16 17 H 0.06 3.38 7.89 -2.91 -0.02 3.36 16 18 C -0.04 -2.48 4.91 84.87 0.42 -2.06 16 19 N -0.93 -54.03 11.19 21.65 0.24 -53.79 16 20 Si 0.96 45.06 29.59 68.60 2.03 47.09 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 23 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 24 C 0.19 9.06 4.30 86.36 0.37 9.43 16 25 C -0.12 -4.42 2.67 -10.71 -0.03 -4.45 16 26 H 0.07 2.83 8.14 -2.39 -0.02 2.81 16 27 C -0.13 -4.23 9.06 71.98 0.65 -3.58 16 28 C 0.10 2.62 6.89 41.78 0.29 2.91 16 29 C -0.08 -1.84 9.52 71.24 0.68 -1.16 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.11 0.73 6.90 -2.39 -0.02 0.71 16 34 H 0.11 0.81 6.88 -2.39 -0.02 0.80 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.09 0.82 6.94 -2.39 -0.02 0.80 16 38 H 0.14 4.05 7.70 -2.91 -0.02 4.02 16 39 H 0.40 14.99 5.85 -92.71 -0.54 14.45 16 40 H 0.06 2.26 8.14 -2.38 -0.02 2.25 16 41 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 42 H 0.01 0.42 7.74 -2.39 -0.02 0.41 16 43 H 0.05 2.10 7.94 -2.39 -0.02 2.08 16 44 H 0.25 14.15 8.31 -92.70 -0.77 13.38 16 45 H 0.06 3.13 6.04 -2.39 -0.01 3.12 16 46 H 0.00 0.14 6.64 -2.39 -0.02 0.13 16 47 H 0.05 1.66 7.54 -2.39 -0.02 1.64 16 48 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 49 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 50 H 0.08 1.62 8.14 -2.38 -0.02 1.60 16 51 H 0.09 1.31 6.92 -2.38 -0.02 1.29 16 52 H 0.08 2.11 6.47 -2.38 -0.02 2.09 16 Total: -1.00 -70.02 401.84 4.63 -65.39 By element: Atomic # 1 Polarization: 30.52 SS G_CDS: 0.36 Total: 30.88 kcal Atomic # 6 Polarization: -2.29 SS G_CDS: 7.08 Total: 4.78 kcal Atomic # 7 Polarization: -119.49 SS G_CDS: -4.78 Total: -124.27 kcal Atomic # 8 Polarization: -23.82 SS G_CDS: -0.06 Total: -23.88 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -70.02 4.63 -65.39 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942368473.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.229 kcal (2) G-P(sol) polarization free energy of solvation -70.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds