Wall clock time and date at job start Tue Mar 31 2020 18:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46502 * 109.47260 * 2 1 4 4 C 1.36448 * 124.85150 * 269.70158 * 3 2 1 5 5 C 1.50705 * 125.56705 * 0.02747 * 4 3 2 6 6 C 1.34481 * 108.85602 * 179.88403 * 4 3 2 7 7 C 1.46684 * 106.33600 * 0.35575 * 6 4 3 8 8 C 1.47264 * 126.94584 * 179.77793 * 7 6 4 9 9 O 1.21630 * 119.99962 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99733 * 0.02562 * 8 7 6 11 11 C 1.46500 * 119.99619 * 179.97438 * 10 8 7 12 12 H 1.08997 * 109.46135 * 324.97695 * 11 10 8 13 13 C 1.53043 * 109.45932 * 84.93297 * 11 10 8 14 14 C 1.53191 * 109.31160 * 58.65390 * 13 11 10 15 15 N 1.46925 * 108.77565 * 54.63477 * 14 13 11 16 16 C 1.36937 * 120.63262 * 126.41458 * 15 14 13 17 17 H 1.08001 * 120.00142 * 207.65893 * 16 15 14 18 18 C 1.38818 * 119.99686 * 27.65947 * 16 15 14 19 19 N 1.31616 * 120.00075 * 17.37495 * 18 16 15 20 20 Si 1.86800 * 119.99620 * 197.37802 * 18 16 15 21 21 H 1.48503 * 109.47474 * 0.02562 * 20 18 16 22 22 H 1.48501 * 109.47231 * 119.99666 * 20 18 16 23 23 H 1.48496 * 109.47298 * 240.00045 * 20 18 16 24 24 C 1.46921 * 118.73966 * 306.38869 * 15 14 13 25 25 C 1.53039 * 109.45895 * 205.00052 * 11 10 8 26 26 H 1.08999 * 109.49809 * 181.36226 * 25 11 10 27 27 C 1.52995 * 109.49780 * 61.29863 * 25 11 10 28 28 C 1.34664 * 124.84966 * 89.99532 * 3 2 1 29 29 C 1.50694 * 125.79988 * 359.96636 * 28 3 2 30 30 H 1.09002 * 109.46925 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47151 * 300.00075 * 1 2 3 32 32 H 1.08996 * 109.46978 * 60.00233 * 1 2 3 33 33 H 1.08996 * 109.46978 * 119.99767 * 2 1 3 34 34 H 1.09001 * 109.47151 * 239.99925 * 2 1 3 35 35 H 1.08993 * 109.46942 * 90.00929 * 5 4 3 36 36 H 1.09001 * 109.46461 * 210.00303 * 5 4 3 37 37 H 1.08995 * 109.47132 * 330.00290 * 5 4 3 38 38 H 1.08004 * 126.83531 * 180.14188 * 6 4 3 39 39 H 0.96994 * 120.00118 * 0.02562 * 10 8 7 40 40 H 1.08996 * 109.49837 * 178.60402 * 13 11 10 41 41 H 1.08997 * 109.49826 * 298.70561 * 13 11 10 42 42 H 1.09005 * 109.58949 * 294.84733 * 14 13 11 43 43 H 1.09002 * 109.59141 * 174.42381 * 14 13 11 44 44 H 0.96999 * 119.99690 * 180.02562 * 19 18 16 45 45 H 1.08999 * 109.59186 * 293.82433 * 24 15 14 46 46 H 1.09003 * 109.58960 * 173.39706 * 24 15 14 47 47 H 1.08996 * 109.47201 * 59.99938 * 27 25 11 48 48 H 1.09003 * 109.47541 * 180.02562 * 27 25 11 49 49 H 1.09008 * 109.47236 * 300.00175 * 27 25 11 50 50 H 1.09003 * 109.46943 * 90.00444 * 29 28 3 51 51 H 1.09007 * 109.47157 * 209.99283 * 29 28 3 52 52 H 1.08996 * 109.47652 * 329.99677 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2839 2.1144 -1.1197 5 6 2.1219 1.6360 -2.5396 6 6 2.7106 3.3347 -0.7492 7 6 2.7129 3.3432 0.7177 8 6 3.1072 4.4577 1.5958 9 8 3.0605 4.3258 2.8040 10 7 3.5198 5.6237 1.0605 11 6 3.9116 6.7326 1.9341 12 1 3.2850 6.7311 2.8260 13 6 5.3776 6.5677 2.3411 14 6 6.2520 6.5356 1.0837 15 7 5.9787 7.7393 0.2868 16 6 6.9997 8.5636 -0.1046 17 1 6.8110 9.6131 -0.2762 18 6 8.2774 8.0503 -0.2809 19 7 8.4529 6.7524 -0.4114 20 14 9.7475 9.2016 -0.3330 21 1 9.2854 10.6026 -0.1634 22 1 10.6870 8.8547 0.7635 23 1 10.4389 9.0627 -1.6398 24 6 4.5892 8.0416 -0.0825 25 6 3.7334 8.0569 1.1880 26 1 4.0475 8.8807 1.8289 27 6 2.2617 8.2362 0.8104 28 6 2.2749 2.1067 1.1051 29 6 2.1076 1.6363 2.5269 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.8934 -0.5138 -0.8900 35 1 1.1142 1.8637 -2.8870 36 1 2.8485 2.1391 -3.1775 37 1 2.2859 0.5592 -2.5811 38 1 2.9980 4.1459 -1.4017 39 1 3.5568 5.7290 0.0970 40 1 5.6768 7.4054 2.9710 41 1 5.4994 5.6355 2.8927 42 1 6.0160 5.6477 0.4970 43 1 7.3036 6.5179 1.3700 44 1 9.3457 6.3937 -0.5342 45 1 4.2175 7.2766 -0.7642 46 1 4.5435 9.0178 -0.5656 47 1 1.6530 8.2441 1.7145 48 1 2.1353 9.1793 0.2786 49 1 1.9483 7.4128 0.1685 50 1 3.0361 1.1798 2.8702 51 1 1.8632 2.4860 3.1645 52 1 1.3028 0.9028 2.5747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000942368476.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:10 Heat of formation + Delta-G solvation = -2.093335 kcal Electronic energy + Delta-G solvation = -30209.027827 eV Core-core repulsion = 26401.460986 eV Total energy + Delta-G solvation = -3807.566840 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.45311 -40.86240 -38.88250 -35.93835 -35.01532 -33.87143 -33.53715 -32.86913 -31.81437 -30.22624 -29.86757 -27.39218 -27.12795 -25.81311 -24.59088 -23.73502 -22.88969 -22.56532 -21.12554 -20.06788 -19.54728 -18.59739 -18.01519 -16.90198 -16.79031 -16.50606 -16.35246 -15.89166 -15.68854 -15.49340 -15.26582 -14.86377 -14.65978 -14.49396 -14.36279 -14.15577 -14.05699 -13.94277 -13.68868 -13.50387 -13.45200 -13.15562 -13.13234 -12.96463 -12.87454 -12.70579 -12.51905 -12.48573 -12.35030 -12.24555 -12.13973 -12.07607 -11.92524 -11.65475 -11.43574 -11.08594 -10.74015 -10.52409 -9.92743 -9.47657 -8.90020 -8.65419 -7.84963 -5.30213 0.80561 1.45406 1.45994 1.48557 1.58635 1.85653 2.51017 2.55072 2.67798 3.29614 3.68013 3.78120 3.79299 3.82793 3.91441 4.11649 4.12362 4.13746 4.19004 4.30965 4.36867 4.44852 4.51453 4.61474 4.63596 4.69548 4.70378 4.78646 4.80067 4.81627 4.83919 4.87732 4.95969 5.01397 5.04756 5.06529 5.12581 5.13761 5.20793 5.25866 5.31018 5.36410 5.44995 5.52904 5.64912 5.71312 5.77850 5.86378 6.17026 6.39880 6.41472 6.78402 7.15701 7.45995 7.87386 8.39768 9.20896 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015062 B = 0.003144 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1858.557269 B = 8904.005973 C = 9501.948607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.017 3.983 5 C -0.079 4.079 6 C -0.190 4.190 7 C -0.266 4.266 8 C 0.585 3.415 9 O -0.591 6.591 10 N -0.703 5.703 11 C 0.169 3.831 12 H 0.074 0.926 13 C -0.142 4.142 14 C 0.192 3.808 15 N -0.607 5.607 16 C -0.259 4.259 17 H 0.070 0.930 18 C -0.052 4.052 19 N -0.933 5.933 20 Si 0.965 3.035 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.292 1.292 24 C 0.151 3.849 25 C -0.106 4.106 26 H 0.079 0.921 27 C -0.132 4.132 28 C 0.097 3.903 29 C -0.085 4.085 30 H 0.099 0.901 31 H 0.052 0.948 32 H 0.059 0.941 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.140 0.860 39 H 0.401 0.599 40 H 0.062 0.938 41 H 0.044 0.956 42 H -0.004 1.004 43 H 0.046 0.954 44 H 0.247 0.753 45 H 0.018 0.982 46 H 0.060 0.940 47 H 0.059 0.941 48 H 0.069 0.931 49 H 0.053 0.947 50 H 0.075 0.925 51 H 0.077 0.923 52 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.190 -13.747 -1.531 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.092 4.092 5 C -0.136 4.136 6 C -0.214 4.214 7 C -0.276 4.276 8 C 0.376 3.624 9 O -0.475 6.475 10 N -0.353 5.353 11 C 0.064 3.936 12 H 0.092 0.908 13 C -0.182 4.182 14 C 0.066 3.934 15 N -0.330 5.330 16 C -0.389 4.389 17 H 0.088 0.912 18 C -0.247 4.247 19 N -0.580 5.580 20 Si 0.793 3.207 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.219 1.219 24 C 0.026 3.974 25 C -0.126 4.126 26 H 0.097 0.903 27 C -0.189 4.189 28 C -0.021 4.021 29 C -0.143 4.143 30 H 0.118 0.882 31 H 0.071 0.929 32 H 0.078 0.922 33 H 0.120 0.880 34 H 0.129 0.871 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.158 0.842 39 H 0.237 0.763 40 H 0.081 0.919 41 H 0.063 0.937 42 H 0.014 0.986 43 H 0.065 0.935 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.079 0.921 47 H 0.078 0.922 48 H 0.088 0.912 49 H 0.072 0.928 50 H 0.093 0.907 51 H 0.096 0.904 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -19.203 -14.216 -0.778 23.905 hybrid contribution 1.529 0.675 -0.388 1.715 sum -17.675 -13.541 -1.166 22.296 Atomic orbital electron populations 1.22129 0.93131 1.04293 1.02551 1.22237 0.96500 0.78698 1.06086 1.43875 1.49965 1.12928 1.04109 1.20641 1.06429 0.91893 0.90215 1.20417 1.03729 1.02210 0.87285 1.21913 1.08584 0.98286 0.92597 1.20213 1.17867 0.95516 0.93973 1.17710 0.75612 0.82177 0.86935 1.90642 1.57848 1.83115 1.15891 1.45796 1.66199 1.12820 1.10446 1.20711 0.93917 0.85952 0.93015 0.90778 1.22387 0.96714 1.00208 0.98919 1.20348 0.97032 0.87155 0.88887 1.44279 1.02196 1.26858 1.59618 1.19553 0.88905 0.90707 1.39714 0.91248 1.25782 1.01198 0.97007 1.00734 1.70214 1.21103 1.12521 1.54130 0.85243 0.79660 0.79163 0.76589 1.18900 1.22141 1.21928 1.21059 0.83949 0.98563 0.93874 1.21789 0.96867 0.95711 0.98249 0.90297 1.21676 0.93438 1.02168 1.01662 1.20448 1.00510 0.90757 0.90352 1.20488 1.02892 1.02555 0.88325 0.88221 0.92906 0.92214 0.87986 0.87067 0.89641 0.89995 0.89924 0.84198 0.76277 0.91936 0.93749 0.98612 0.93527 0.94354 0.96454 0.92142 0.92177 0.91157 0.92803 0.90673 0.90375 0.89103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 10.24 71.98 0.74 -0.74 16 2 C 0.08 0.98 6.09 86.38 0.53 1.50 16 3 N -0.43 -9.12 2.69 -495.47 -1.33 -10.45 16 4 C 0.02 0.38 6.85 40.98 0.28 0.66 16 5 C -0.08 -1.13 10.06 71.24 0.72 -0.42 16 6 C -0.19 -5.53 10.45 23.62 0.25 -5.28 16 7 C -0.27 -8.83 6.29 -19.04 -0.12 -8.95 16 8 C 0.58 22.30 7.77 86.62 0.67 22.97 16 9 O -0.59 -25.03 14.48 -4.13 -0.06 -25.09 16 10 N -0.70 -25.68 3.59 -445.82 -1.60 -27.28 16 11 C 0.17 6.30 2.21 45.02 0.10 6.40 16 12 H 0.07 2.77 7.58 -2.39 -0.02 2.75 16 13 C -0.14 -6.18 5.77 30.67 0.18 -6.00 16 14 C 0.19 9.84 5.05 86.36 0.44 10.28 16 15 N -0.61 -30.71 2.99 -699.08 -2.09 -32.81 16 16 C -0.26 -14.32 9.59 84.03 0.81 -13.51 16 17 H 0.07 3.72 7.89 -2.91 -0.02 3.69 16 18 C -0.05 -2.95 4.91 84.86 0.42 -2.53 16 19 N -0.93 -56.57 11.19 21.65 0.24 -56.32 16 20 Si 0.96 45.71 29.59 68.60 2.03 47.74 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 22 H -0.29 -14.06 7.11 99.48 0.71 -13.35 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 24 C 0.15 6.11 5.50 86.36 0.48 6.58 16 25 C -0.11 -3.58 2.67 -10.72 -0.03 -3.61 16 26 H 0.08 2.72 8.14 -2.39 -0.02 2.70 16 27 C -0.13 -3.49 9.05 71.98 0.65 -2.84 16 28 C 0.10 2.67 6.89 41.78 0.29 2.96 16 29 C -0.09 -1.99 9.26 71.23 0.66 -1.33 16 30 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.10 0.96 7.49 -2.39 -0.02 0.95 16 34 H 0.11 0.86 6.89 -2.39 -0.02 0.84 16 35 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.08 1.21 8.14 -2.39 -0.02 1.19 16 37 H 0.08 0.84 6.94 -2.39 -0.02 0.82 16 38 H 0.14 3.96 7.70 -2.91 -0.02 3.94 16 39 H 0.40 14.32 5.85 -92.71 -0.54 13.77 16 40 H 0.06 2.67 8.14 -2.39 -0.02 2.65 16 41 H 0.04 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.00 -0.23 7.74 -2.38 -0.02 -0.25 16 43 H 0.05 2.73 6.04 -2.39 -0.01 2.72 16 44 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 45 H 0.02 0.70 6.64 -2.39 -0.02 0.69 16 46 H 0.06 2.37 7.93 -2.39 -0.02 2.35 16 47 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 48 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 49 H 0.05 1.42 7.53 -2.38 -0.02 1.40 16 50 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 51 H 0.08 2.23 6.47 -2.38 -0.02 2.21 16 52 H 0.09 1.45 7.58 -2.39 -0.02 1.43 16 Total: -1.00 -73.28 402.62 4.59 -68.69 By element: Atomic # 1 Polarization: 29.03 SS G_CDS: 0.36 Total: 29.39 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 7.04 Total: 6.13 kcal Atomic # 7 Polarization: -122.08 SS G_CDS: -4.78 Total: -126.86 kcal Atomic # 8 Polarization: -25.03 SS G_CDS: -0.06 Total: -25.09 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.74 kcal Total: -73.28 4.59 -68.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000942368476.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.601 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds