Wall clock time and date at job start Tue Mar 31 2020 18:07:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47424 * 2 1 4 4 C 1.36447 * 124.85248 * 89.97172 * 3 2 1 5 5 C 1.50706 * 125.57006 * 359.73723 * 4 3 2 6 6 C 1.34484 * 108.86018 * 180.02562 * 4 3 2 7 7 C 1.46684 * 106.32929 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94240 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99971 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99921 * 359.96975 * 8 7 6 11 11 C 1.46497 * 120.00053 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46136 * 35.00046 * 11 10 8 13 13 C 1.53049 * 109.46116 * 275.03126 * 11 10 8 14 14 C 1.53196 * 109.31259 * 178.61221 * 13 11 10 15 15 N 1.46931 * 108.77021 * 54.63587 * 14 13 11 16 16 C 1.36936 * 120.62934 * 126.37129 * 15 14 13 17 17 H 1.07990 * 120.00476 * 220.56338 * 16 15 14 18 18 C 1.38817 * 119.99754 * 40.55951 * 16 15 14 19 19 N 1.31616 * 119.99754 * 215.63287 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 35.63715 * 18 16 15 21 21 H 1.48497 * 109.47248 * 84.60633 * 20 18 16 22 22 H 1.48505 * 109.47087 * 204.61074 * 20 18 16 23 23 H 1.48497 * 109.46715 * 324.60425 * 20 18 16 24 24 C 1.46919 * 118.74085 * 306.38604 * 15 14 13 25 25 H 1.09000 * 109.58682 * 173.54353 * 24 15 14 26 26 C 1.53005 * 109.59017 * 293.82825 * 24 15 14 27 27 C 1.53034 * 109.46170 * 154.97707 * 11 10 8 28 28 C 1.34660 * 124.85205 * 269.97533 * 3 2 1 29 29 C 1.50697 * 125.79838 * 359.97438 * 28 3 2 30 30 H 1.09007 * 109.46914 * 59.99999 * 1 2 3 31 31 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47463 * 300.00459 * 1 2 3 33 33 H 1.09001 * 109.47463 * 239.99541 * 2 1 3 34 34 H 1.09002 * 109.46549 * 119.99704 * 2 1 3 35 35 H 1.08999 * 109.47029 * 89.99996 * 5 4 3 36 36 H 1.08998 * 109.46881 * 210.00079 * 5 4 3 37 37 H 1.09006 * 109.46985 * 329.99959 * 5 4 3 38 38 H 1.08001 * 126.83322 * 179.97438 * 6 4 3 39 39 H 0.96997 * 119.99899 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.49544 * 298.56812 * 13 11 10 41 41 H 1.08997 * 109.49525 * 58.66094 * 13 11 10 42 42 H 1.08992 * 109.58377 * 174.41969 * 14 13 11 43 43 H 1.08998 * 109.58614 * 294.70736 * 14 13 11 44 44 H 0.97003 * 120.00370 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.47203 * 59.99594 * 26 24 15 46 46 H 1.08992 * 109.47178 * 180.02562 * 26 24 15 47 47 H 1.08999 * 109.46918 * 299.99921 * 26 24 15 48 48 H 1.09005 * 109.49822 * 301.33943 * 27 11 10 49 49 H 1.09003 * 109.49882 * 61.43249 * 27 11 10 50 50 H 1.09004 * 109.47188 * 90.00198 * 29 28 3 51 51 H 1.09004 * 109.47148 * 210.00361 * 29 28 3 52 52 H 1.09006 * 109.47490 * 330.00037 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2778 2.1165 1.1197 5 6 2.1035 1.6425 2.5396 6 6 2.7084 3.3355 0.7492 7 6 2.7122 3.3433 -0.7176 8 6 3.1069 4.4576 -1.5957 9 8 3.0614 4.3253 -2.8040 10 7 3.5183 5.6242 -1.0606 11 6 3.9103 6.7330 -1.9341 12 1 3.2850 6.7305 -2.8269 13 6 5.3772 6.5692 -2.3388 14 6 5.7737 7.7112 -3.2798 15 7 5.4674 8.9908 -2.6257 16 6 6.4310 9.9545 -2.4925 17 1 6.5044 10.5218 -1.5765 18 6 7.3135 10.2023 -3.5349 19 7 8.5632 10.5246 -3.2766 20 14 6.7275 10.0784 -5.3043 21 1 6.0996 11.3618 -5.7088 22 1 7.8847 9.7926 -6.1901 23 1 5.7326 8.9822 -5.4206 24 6 4.1077 9.2164 -2.1170 25 1 4.0754 10.1553 -1.5642 26 6 3.1251 9.2768 -3.2883 27 6 3.7301 8.0574 -1.1890 28 6 2.2754 2.1065 -1.1051 29 6 2.1100 1.6354 -2.5269 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0290 1.1820 2.8852 36 1 1.8593 2.4912 3.1785 37 1 1.2960 0.9115 2.5821 38 1 2.9945 4.1471 1.4018 39 1 3.5548 5.7296 -0.0970 40 1 6.0054 6.5965 -1.4485 41 1 5.5095 5.6150 -2.8488 42 1 6.8414 7.6557 -3.4920 43 1 5.2115 7.6301 -4.2100 44 1 9.1799 10.6981 -4.0050 45 1 3.1552 8.3354 -3.8367 46 1 2.1173 9.4447 -2.9088 47 1 3.4031 10.0940 -3.9539 48 1 2.6899 8.1627 -0.8804 49 1 4.3740 8.0706 -0.3095 50 1 1.1011 1.8641 -2.8705 51 1 2.8345 2.1423 -3.1643 52 1 2.2748 0.5589 -2.5746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947515016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:23 Heat of formation + Delta-G solvation = 17.775807 kcal Electronic energy + Delta-G solvation = -29578.498170 eV Core-core repulsion = 25771.792921 eV Total energy + Delta-G solvation = -3806.705250 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.66693 -39.34156 -37.65250 -34.45141 -34.34062 -32.83669 -32.40250 -31.08100 -30.32972 -29.51186 -29.05648 -26.97014 -25.19718 -24.24588 -23.75608 -22.31977 -22.11534 -21.16745 -19.87920 -19.06402 -18.17417 -17.08215 -16.75106 -15.96687 -15.77724 -15.51289 -15.02370 -14.65944 -14.33169 -14.13827 -13.78172 -13.68580 -13.54863 -13.46408 -13.37006 -13.16661 -12.88607 -12.86896 -12.71453 -12.60312 -12.55490 -12.31681 -12.20168 -11.86871 -11.81434 -11.71729 -11.51196 -11.38980 -10.91275 -10.78335 -10.54722 -10.45119 -10.25444 -9.89254 -9.64776 -9.51653 -9.30966 -8.78409 -8.51273 -8.28747 -8.07148 -6.67580 -6.04358 -3.32238 1.76486 2.24841 2.53947 3.47399 3.57188 3.64112 3.67590 3.77808 4.21290 4.41612 4.51109 4.64214 4.64613 4.70101 4.89954 5.01990 5.07042 5.10037 5.11685 5.22317 5.23819 5.32373 5.39547 5.46942 5.48820 5.54868 5.59381 5.61706 5.76478 5.79526 5.91057 5.97137 6.01848 6.14285 6.21582 6.31790 6.35177 6.43572 6.54887 6.60560 6.68305 6.70675 6.87071 6.93529 6.96541 6.99505 7.06642 7.10910 7.20440 7.95755 8.09442 8.46727 8.66704 9.07320 9.77831 10.28429 11.11538 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.002541 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.529035 B =11016.538234 C =11323.432333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.008 3.992 5 C -0.083 4.083 6 C -0.165 4.165 7 C -0.229 4.229 8 C 0.589 3.411 9 O -0.554 6.554 10 N -0.720 5.720 11 C 0.152 3.848 12 H 0.084 0.916 13 C -0.141 4.141 14 C 0.147 3.853 15 N -0.592 5.592 16 C -0.277 4.277 17 H 0.072 0.928 18 C 0.051 3.949 19 N -0.879 5.879 20 Si 0.840 3.160 21 H -0.288 1.288 22 H -0.298 1.298 23 H -0.257 1.257 24 C 0.168 3.832 25 H 0.073 0.927 26 C -0.168 4.168 27 C -0.132 4.132 28 C 0.103 3.897 29 C -0.092 4.092 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.063 0.937 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.061 0.939 38 H 0.144 0.856 39 H 0.395 0.605 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.026 0.974 44 H 0.263 0.737 45 H 0.049 0.951 46 H 0.042 0.958 47 H 0.052 0.948 48 H 0.057 0.943 49 H 0.065 0.935 50 H 0.074 0.926 51 H 0.102 0.898 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.758 -22.202 10.594 29.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.117 5.117 4 C -0.100 4.100 5 C -0.140 4.140 6 C -0.189 4.189 7 C -0.239 4.239 8 C 0.377 3.623 9 O -0.434 6.434 10 N -0.369 5.369 11 C 0.048 3.952 12 H 0.102 0.898 13 C -0.182 4.182 14 C 0.020 3.980 15 N -0.314 5.314 16 C -0.405 4.405 17 H 0.090 0.910 18 C -0.152 4.152 19 N -0.518 5.518 20 Si 0.667 3.333 21 H -0.215 1.215 22 H -0.225 1.225 23 H -0.182 1.182 24 C 0.060 3.940 25 H 0.091 0.909 26 C -0.227 4.227 27 C -0.172 4.172 28 C -0.013 4.013 29 C -0.149 4.149 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.082 0.918 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.099 0.901 37 H 0.080 0.920 38 H 0.161 0.839 39 H 0.228 0.772 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.085 0.915 43 H 0.044 0.956 44 H 0.073 0.927 45 H 0.068 0.932 46 H 0.061 0.939 47 H 0.071 0.929 48 H 0.076 0.924 49 H 0.084 0.916 50 H 0.093 0.907 51 H 0.121 0.879 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -16.698 -22.546 9.722 29.693 hybrid contribution -0.179 0.069 -0.554 0.587 sum -16.877 -22.477 9.167 29.565 Atomic orbital electron populations 1.22164 0.94222 1.02983 1.03385 1.21849 0.95663 0.80826 1.04414 1.43612 1.51158 1.11777 1.05109 1.20148 1.08601 0.92673 0.88569 1.20314 1.01958 1.01953 0.89787 1.21780 1.07068 0.96809 0.93225 1.20191 1.15514 0.95056 0.93146 1.17335 0.76220 0.81706 0.87019 1.90719 1.55788 1.82256 1.14677 1.46028 1.67336 1.13372 1.10182 1.20993 0.96269 0.84484 0.93420 0.89786 1.22419 0.95231 0.99450 1.01053 1.21234 0.99399 0.84251 0.93069 1.44360 1.05804 1.12473 1.68808 1.18602 1.07502 1.15830 0.98522 0.91006 1.25582 0.95116 0.96748 0.97722 1.70098 1.02352 1.46743 1.32570 0.87386 0.79117 0.79025 0.87757 1.21543 1.22484 1.18179 1.20577 0.85511 0.95359 0.92549 0.90867 1.22350 0.98327 1.01568 1.00448 1.22262 1.00296 0.95002 0.99600 1.20253 1.00941 0.91062 0.89043 1.20555 1.04240 1.00410 0.89721 0.91673 0.90694 0.91805 0.89087 0.89172 0.91165 0.90088 0.91977 0.83878 0.77186 0.91990 0.92655 0.91508 0.95577 0.92744 0.93208 0.93864 0.92891 0.92412 0.91608 0.90715 0.87937 0.92249 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.82 10.24 37.16 0.38 -0.44 16 2 C 0.09 0.54 6.09 -4.04 -0.02 0.51 16 3 N -0.44 -4.14 2.69 -107.96 -0.29 -4.43 16 4 C 0.01 0.07 6.85 -81.86 -0.56 -0.49 16 5 C -0.08 -0.50 9.81 36.01 0.35 -0.14 16 6 C -0.16 -1.86 10.45 -37.50 -0.39 -2.25 16 7 C -0.23 -3.17 6.29 -103.35 -0.65 -3.82 16 8 C 0.59 9.64 7.77 -12.59 -0.10 9.54 16 9 O -0.55 -10.69 14.47 5.25 0.08 -10.62 16 10 N -0.72 -10.92 5.07 -54.89 -0.28 -11.20 16 11 C 0.15 2.65 2.21 -67.89 -0.15 2.50 16 12 H 0.08 1.62 5.92 -51.93 -0.31 1.31 16 13 C -0.14 -2.77 5.65 -26.60 -0.15 -2.92 16 14 C 0.15 3.34 4.18 -3.71 -0.02 3.32 16 15 N -0.59 -14.04 2.19 -164.77 -0.36 -14.40 16 16 C -0.28 -7.68 9.68 -15.06 -0.15 -7.82 16 17 H 0.07 2.13 8.06 -52.49 -0.42 1.71 16 18 C 0.05 1.48 4.80 -17.43 -0.08 1.39 16 19 N -0.88 -26.66 13.97 55.49 0.78 -25.89 16 20 Si 0.84 21.84 27.40 -169.99 -4.66 17.18 16 21 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 22 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 23 H -0.26 -6.48 5.28 56.52 0.30 -6.18 16 24 C 0.17 3.31 3.29 -67.60 -0.22 3.09 16 25 H 0.07 1.46 7.93 -51.93 -0.41 1.05 16 26 C -0.17 -3.11 9.03 37.16 0.34 -2.77 16 27 C -0.13 -2.20 5.02 -26.61 -0.13 -2.33 16 28 C 0.10 1.24 6.89 -81.89 -0.56 0.68 16 29 C -0.09 -0.98 9.52 36.00 0.34 -0.63 16 30 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.09 0.44 6.87 -51.93 -0.36 0.08 16 34 H 0.09 0.38 7.53 -51.93 -0.39 -0.02 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.29 7.61 -51.93 -0.40 -0.10 16 38 H 0.14 1.35 7.70 -52.49 -0.40 0.95 16 39 H 0.39 5.02 7.73 -40.82 -0.32 4.70 16 40 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 41 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.07 1.65 6.99 -51.93 -0.36 1.28 16 43 H 0.03 0.61 6.10 -51.93 -0.32 0.29 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.25 16 45 H 0.05 0.95 5.73 -51.93 -0.30 0.65 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 48 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 49 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 50 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 51 H 0.10 1.34 6.46 -51.93 -0.34 1.01 16 52 H 0.06 0.47 6.92 -51.93 -0.36 0.11 16 LS Contribution 400.61 15.07 6.04 6.04 Total: -1.00 -33.56 400.61 -9.47 -43.03 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -8.99 Total: 2.89 kcal Atomic # 6 Polarization: -0.82 SS G_CDS: -1.78 Total: -2.60 kcal Atomic # 7 Polarization: -55.77 SS G_CDS: -0.15 Total: -55.93 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.62 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.66 Total: 17.18 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -33.56 -9.47 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947515016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.806 kcal (2) G-P(sol) polarization free energy of solvation -33.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.776 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds