Wall clock time and date at job start Tue Mar 31 2020 18:07:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46498 * 109.47424 * 2 1 4 4 C 1.36447 * 124.85248 * 89.97172 * 3 2 1 5 5 C 1.50706 * 125.57006 * 359.73723 * 4 3 2 6 6 C 1.34484 * 108.86018 * 180.02562 * 4 3 2 7 7 C 1.46684 * 106.32929 * 359.97438 * 6 4 3 8 8 C 1.47265 * 126.94240 * 180.02562 * 7 6 4 9 9 O 1.21630 * 119.99971 * 179.97438 * 8 7 6 10 10 N 1.34777 * 119.99921 * 359.96975 * 8 7 6 11 11 C 1.46497 * 120.00053 * 180.02562 * 10 8 7 12 12 H 1.08998 * 109.46136 * 35.00046 * 11 10 8 13 13 C 1.53049 * 109.46116 * 275.03126 * 11 10 8 14 14 C 1.53196 * 109.31259 * 178.61221 * 13 11 10 15 15 N 1.46931 * 108.77021 * 54.63587 * 14 13 11 16 16 C 1.36936 * 120.62934 * 126.37129 * 15 14 13 17 17 H 1.07990 * 120.00476 * 220.56338 * 16 15 14 18 18 C 1.38817 * 119.99754 * 40.55951 * 16 15 14 19 19 N 1.31616 * 119.99754 * 215.63287 * 18 16 15 20 20 Si 1.86800 * 120.00273 * 35.63715 * 18 16 15 21 21 H 1.48497 * 109.47248 * 84.60633 * 20 18 16 22 22 H 1.48505 * 109.47087 * 204.61074 * 20 18 16 23 23 H 1.48497 * 109.46715 * 324.60425 * 20 18 16 24 24 C 1.46919 * 118.74085 * 306.38604 * 15 14 13 25 25 H 1.09000 * 109.58682 * 173.54353 * 24 15 14 26 26 C 1.53005 * 109.59017 * 293.82825 * 24 15 14 27 27 C 1.53034 * 109.46170 * 154.97707 * 11 10 8 28 28 C 1.34660 * 124.85205 * 269.97533 * 3 2 1 29 29 C 1.50697 * 125.79838 * 359.97438 * 28 3 2 30 30 H 1.09007 * 109.46914 * 59.99999 * 1 2 3 31 31 H 1.09000 * 109.47415 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47463 * 300.00459 * 1 2 3 33 33 H 1.09001 * 109.47463 * 239.99541 * 2 1 3 34 34 H 1.09002 * 109.46549 * 119.99704 * 2 1 3 35 35 H 1.08999 * 109.47029 * 89.99996 * 5 4 3 36 36 H 1.08998 * 109.46881 * 210.00079 * 5 4 3 37 37 H 1.09006 * 109.46985 * 329.99959 * 5 4 3 38 38 H 1.08001 * 126.83322 * 179.97438 * 6 4 3 39 39 H 0.96997 * 119.99899 * 0.02562 * 10 8 7 40 40 H 1.08995 * 109.49544 * 298.56812 * 13 11 10 41 41 H 1.08997 * 109.49525 * 58.66094 * 13 11 10 42 42 H 1.08992 * 109.58377 * 174.41969 * 14 13 11 43 43 H 1.08998 * 109.58614 * 294.70736 * 14 13 11 44 44 H 0.97003 * 120.00370 * 180.02562 * 19 18 16 45 45 H 1.08994 * 109.47203 * 59.99594 * 26 24 15 46 46 H 1.08992 * 109.47178 * 180.02562 * 26 24 15 47 47 H 1.08999 * 109.46918 * 299.99921 * 26 24 15 48 48 H 1.09005 * 109.49822 * 301.33943 * 27 11 10 49 49 H 1.09003 * 109.49882 * 61.43249 * 27 11 10 50 50 H 1.09004 * 109.47188 * 90.00198 * 29 28 3 51 51 H 1.09004 * 109.47148 * 210.00361 * 29 28 3 52 52 H 1.09006 * 109.47490 * 330.00037 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2778 2.1165 1.1197 5 6 2.1035 1.6425 2.5396 6 6 2.7084 3.3355 0.7492 7 6 2.7122 3.3433 -0.7176 8 6 3.1069 4.4576 -1.5957 9 8 3.0614 4.3253 -2.8040 10 7 3.5183 5.6242 -1.0606 11 6 3.9103 6.7330 -1.9341 12 1 3.2850 6.7305 -2.8269 13 6 5.3772 6.5692 -2.3388 14 6 5.7737 7.7112 -3.2798 15 7 5.4674 8.9908 -2.6257 16 6 6.4310 9.9545 -2.4925 17 1 6.5044 10.5218 -1.5765 18 6 7.3135 10.2023 -3.5349 19 7 8.5632 10.5246 -3.2766 20 14 6.7275 10.0784 -5.3043 21 1 6.0996 11.3618 -5.7088 22 1 7.8847 9.7926 -6.1901 23 1 5.7326 8.9822 -5.4206 24 6 4.1077 9.2164 -2.1170 25 1 4.0754 10.1553 -1.5642 26 6 3.1251 9.2768 -3.2883 27 6 3.7301 8.0574 -1.1890 28 6 2.2754 2.1065 -1.1051 29 6 2.1100 1.6354 -2.5269 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8932 -0.5138 0.8901 35 1 3.0290 1.1820 2.8852 36 1 1.8593 2.4912 3.1785 37 1 1.2960 0.9115 2.5821 38 1 2.9945 4.1471 1.4018 39 1 3.5548 5.7296 -0.0970 40 1 6.0054 6.5965 -1.4485 41 1 5.5095 5.6150 -2.8488 42 1 6.8414 7.6557 -3.4920 43 1 5.2115 7.6301 -4.2100 44 1 9.1799 10.6981 -4.0050 45 1 3.1552 8.3354 -3.8367 46 1 2.1173 9.4447 -2.9088 47 1 3.4031 10.0940 -3.9539 48 1 2.6899 8.1627 -0.8804 49 1 4.3740 8.0706 -0.3095 50 1 1.1011 1.8641 -2.8705 51 1 2.8345 2.1423 -3.1643 52 1 2.2748 0.5589 -2.5746 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000947515016.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:22 Heat of formation + Delta-G solvation = -2.089886 kcal Electronic energy + Delta-G solvation = -29579.359611 eV Core-core repulsion = 25771.792921 eV Total energy + Delta-G solvation = -3807.566691 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.45292 -40.71543 -39.18397 -35.95285 -35.01679 -34.30794 -33.56344 -32.77352 -31.89216 -30.24613 -29.89992 -28.50951 -26.34084 -25.62224 -24.63277 -24.01664 -23.33485 -22.35929 -21.00176 -20.25074 -19.54959 -18.68010 -17.89118 -17.38536 -16.78589 -16.60657 -16.32025 -15.94313 -15.63121 -15.53792 -15.21279 -14.94974 -14.78376 -14.38523 -14.34566 -14.27516 -14.06931 -14.03001 -13.89047 -13.72562 -13.70172 -13.43268 -13.16979 -13.01015 -12.85385 -12.70148 -12.53892 -12.49124 -12.40862 -12.25120 -12.18124 -12.10578 -12.03352 -11.61650 -11.51476 -11.11004 -10.74730 -10.47702 -9.98671 -9.49088 -8.90284 -8.67258 -8.28167 -5.51602 0.78742 1.36195 1.42766 1.46416 1.52729 1.84218 2.45821 2.48733 2.63565 2.93034 3.42739 3.76675 3.79509 3.82502 3.91198 4.05043 4.10934 4.15794 4.28014 4.31251 4.36460 4.39035 4.47508 4.50960 4.63030 4.65400 4.68812 4.69786 4.77257 4.83236 4.83698 4.85381 4.85974 4.96444 5.01026 5.06876 5.09798 5.13649 5.14388 5.16098 5.25478 5.28692 5.32113 5.38143 5.60703 5.67388 5.87391 5.94214 6.17372 6.24061 6.40237 6.78289 7.02202 7.45191 7.65917 8.18533 8.92009 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023395 B = 0.002541 C = 0.002472 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1196.529035 B =11016.538234 C =11323.432333 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.433 5.433 4 C 0.014 3.986 5 C -0.081 4.081 6 C -0.184 4.184 7 C -0.265 4.265 8 C 0.584 3.416 9 O -0.592 6.592 10 N -0.710 5.710 11 C 0.163 3.837 12 H 0.070 0.930 13 C -0.129 4.129 14 C 0.149 3.851 15 N -0.601 5.601 16 C -0.264 4.264 17 H 0.045 0.955 18 C 0.004 3.996 19 N -0.923 5.923 20 Si 0.897 3.103 21 H -0.289 1.289 22 H -0.302 1.302 23 H -0.248 1.248 24 C 0.159 3.841 25 H 0.072 0.928 26 C -0.160 4.160 27 C -0.119 4.119 28 C 0.095 3.905 29 C -0.088 4.088 30 H 0.049 0.951 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.113 0.887 35 H 0.080 0.920 36 H 0.090 0.910 37 H 0.079 0.921 38 H 0.156 0.844 39 H 0.408 0.592 40 H 0.058 0.942 41 H 0.050 0.950 42 H 0.040 0.960 43 H 0.023 0.977 44 H 0.263 0.737 45 H 0.042 0.958 46 H 0.078 0.922 47 H 0.035 0.965 48 H 0.091 0.909 49 H 0.068 0.932 50 H 0.078 0.922 51 H 0.073 0.927 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.427 -24.693 12.317 33.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.110 5.110 4 C -0.094 4.094 5 C -0.138 4.138 6 C -0.207 4.207 7 C -0.275 4.275 8 C 0.375 3.625 9 O -0.475 6.475 10 N -0.360 5.360 11 C 0.058 3.942 12 H 0.088 0.912 13 C -0.169 4.169 14 C 0.023 3.977 15 N -0.325 5.325 16 C -0.394 4.394 17 H 0.062 0.938 18 C -0.196 4.196 19 N -0.565 5.565 20 Si 0.723 3.277 21 H -0.216 1.216 22 H -0.229 1.229 23 H -0.172 1.172 24 C 0.053 3.947 25 H 0.090 0.910 26 C -0.219 4.219 27 C -0.158 4.158 28 C -0.023 4.023 29 C -0.145 4.145 30 H 0.069 0.931 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.119 0.881 34 H 0.131 0.869 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.098 0.902 38 H 0.173 0.827 39 H 0.244 0.756 40 H 0.076 0.924 41 H 0.069 0.931 42 H 0.059 0.941 43 H 0.040 0.960 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.097 0.903 47 H 0.054 0.946 48 H 0.109 0.891 49 H 0.086 0.914 50 H 0.096 0.904 51 H 0.091 0.909 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -19.418 -25.067 11.484 33.724 hybrid contribution 0.603 0.742 -0.983 1.371 sum -18.815 -24.325 10.501 32.496 Atomic orbital electron populations 1.22134 0.93404 1.04229 1.02484 1.22212 0.96295 0.78892 1.06085 1.43894 1.49911 1.12878 1.04282 1.20725 1.06520 0.92088 0.90065 1.20432 1.03175 1.02840 0.87330 1.21995 1.08298 0.98323 0.92104 1.20163 1.17984 0.95088 0.94251 1.17790 0.75511 0.82318 0.86918 1.90693 1.57479 1.82931 1.16383 1.45810 1.66999 1.12599 1.10602 1.20696 0.94149 0.85771 0.93593 0.91214 1.22241 0.97016 0.97733 0.99956 1.21121 0.97772 0.85084 0.93724 1.44435 1.07081 1.11941 1.68996 1.18537 1.08012 1.15526 0.97283 0.93774 1.26038 0.95113 0.97661 1.00773 1.70173 1.03360 1.49539 1.33389 0.86493 0.78462 0.79034 0.83663 1.21594 1.22948 1.17200 1.20792 0.83582 0.96767 0.93522 0.90998 1.22251 0.99775 1.00500 0.99412 1.22111 1.02312 0.92852 0.98505 1.20423 1.00626 0.91083 0.90189 1.20484 1.03463 1.01809 0.88719 0.93145 0.88380 0.92109 0.88093 0.86929 0.90091 0.89167 0.90216 0.82653 0.75560 0.92365 0.93113 0.94133 0.95959 0.92798 0.93918 0.90296 0.94561 0.89082 0.91362 0.90386 0.90863 0.89438 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 10.24 71.98 0.74 -0.35 16 2 C 0.09 0.69 6.09 86.38 0.53 1.22 16 3 N -0.43 -7.14 2.69 -495.49 -1.33 -8.47 16 4 C 0.01 0.24 6.85 40.98 0.28 0.52 16 5 C -0.08 -0.67 9.81 71.24 0.70 0.03 16 6 C -0.18 -3.84 10.45 23.62 0.25 -3.60 16 7 C -0.26 -7.15 6.29 -19.04 -0.12 -7.27 16 8 C 0.58 19.07 7.77 86.62 0.67 19.74 16 9 O -0.59 -23.30 14.47 -4.13 -0.06 -23.36 16 10 N -0.71 -20.87 5.07 -445.82 -2.26 -23.13 16 11 C 0.16 5.52 2.21 45.02 0.10 5.62 16 12 H 0.07 2.63 5.92 -2.39 -0.01 2.62 16 13 C -0.13 -5.08 5.65 30.68 0.17 -4.91 16 14 C 0.15 6.86 4.18 86.36 0.36 7.22 16 15 N -0.60 -28.65 2.19 -675.23 -1.48 -30.12 16 16 C -0.26 -14.98 9.68 84.03 0.81 -14.17 16 17 H 0.04 2.72 8.06 -2.92 -0.02 2.70 16 18 C 0.00 0.21 4.80 84.86 0.41 0.62 16 19 N -0.92 -57.68 13.97 21.65 0.30 -57.37 16 20 Si 0.90 46.28 27.40 68.60 1.88 48.16 16 21 H -0.29 -14.83 7.11 99.48 0.71 -14.12 16 22 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 23 H -0.25 -12.26 5.28 99.48 0.53 -11.74 16 24 C 0.16 6.12 3.29 44.98 0.15 6.27 16 25 H 0.07 2.78 7.93 -2.39 -0.02 2.76 16 26 C -0.16 -5.66 9.03 71.98 0.65 -5.01 16 27 C -0.12 -3.70 5.02 30.67 0.15 -3.55 16 28 C 0.09 2.18 6.89 41.78 0.29 2.47 16 29 C -0.09 -1.81 9.52 71.23 0.68 -1.13 16 30 H 0.05 0.50 8.14 -2.38 -0.02 0.48 16 31 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.10 0.64 6.87 -2.39 -0.02 0.63 16 34 H 0.11 0.45 7.53 -2.39 -0.02 0.43 16 35 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 36 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 0.41 7.61 -2.38 -0.02 0.39 16 38 H 0.16 2.65 7.70 -2.91 -0.02 2.63 16 39 H 0.41 9.72 7.73 -92.71 -0.72 9.00 16 40 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.04 2.05 6.99 -2.39 -0.02 2.03 16 43 H 0.02 1.05 6.10 -2.39 -0.01 1.04 16 44 H 0.26 15.64 8.31 -92.71 -0.77 14.87 16 45 H 0.04 1.56 5.73 -2.39 -0.01 1.55 16 46 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 47 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.09 2.31 8.14 -2.38 -0.02 2.29 16 49 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 50 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 51 H 0.07 1.98 6.46 -2.38 -0.02 1.96 16 52 H 0.09 1.23 6.92 -2.38 -0.02 1.21 16 Total: -1.00 -75.49 400.61 3.88 -71.61 By element: Atomic # 1 Polarization: 18.96 SS G_CDS: 0.01 Total: 18.97 kcal Atomic # 6 Polarization: -3.10 SS G_CDS: 6.81 Total: 3.71 kcal Atomic # 7 Polarization: -114.33 SS G_CDS: -4.77 Total: -119.10 kcal Atomic # 8 Polarization: -23.30 SS G_CDS: -0.06 Total: -23.36 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.88 Total: 48.16 kcal Total: -75.49 3.88 -71.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947515016.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.524 kcal (2) G-P(sol) polarization free energy of solvation -75.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds