Wall clock time and date at job start Tue Mar 31 2020 18:07:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46502 * 109.47057 * 2 1 4 4 C 1.36448 * 124.85836 * 90.02024 * 3 2 1 5 5 C 1.50699 * 125.56477 * 0.02562 * 4 3 2 6 6 C 1.34485 * 108.86124 * 179.97438 * 4 3 2 7 7 C 1.46684 * 106.33240 * 359.97438 * 6 4 3 8 8 C 1.47263 * 126.94675 * 179.97438 * 7 6 4 9 9 O 1.21623 * 120.00468 * 180.02562 * 8 7 6 10 10 N 1.34776 * 119.99615 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00282 * 179.97438 * 10 8 7 12 12 H 1.09001 * 109.45614 * 324.98179 * 11 10 8 13 13 C 1.53040 * 109.45577 * 84.93690 * 11 10 8 14 14 C 1.53195 * 109.31339 * 181.38986 * 13 11 10 15 15 N 1.46929 * 108.77082 * 305.36683 * 14 13 11 16 16 C 1.36943 * 120.62507 * 233.62910 * 15 14 13 17 17 H 1.08002 * 119.99257 * 150.14396 * 16 15 14 18 18 C 1.38808 * 120.00253 * 330.14178 * 16 15 14 19 19 N 1.31620 * 119.99501 * 344.50367 * 18 16 15 20 20 Si 1.86791 * 120.00269 * 164.50459 * 18 16 15 21 21 H 1.48504 * 109.47334 * 89.99694 * 20 18 16 22 22 H 1.48502 * 109.47613 * 210.00275 * 20 18 16 23 23 H 1.48506 * 109.47192 * 330.00053 * 20 18 16 24 24 C 1.46923 * 118.74217 * 53.60770 * 15 14 13 25 25 H 1.08994 * 109.58697 * 66.17643 * 24 15 14 26 26 C 1.52997 * 109.58798 * 186.60602 * 24 15 14 27 27 C 1.53037 * 109.46028 * 205.00601 * 11 10 8 28 28 C 1.34658 * 124.84666 * 270.02009 * 3 2 1 29 29 C 1.50698 * 125.80412 * 359.97438 * 28 3 2 30 30 H 1.08996 * 109.47109 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47347 * 300.00413 * 1 2 3 32 32 H 1.09008 * 109.46619 * 60.00436 * 1 2 3 33 33 H 1.08994 * 109.47975 * 239.99309 * 2 1 3 34 34 H 1.09007 * 109.47241 * 119.99135 * 2 1 3 35 35 H 1.08995 * 109.47154 * 269.97294 * 5 4 3 36 36 H 1.08999 * 109.47501 * 29.97691 * 5 4 3 37 37 H 1.09007 * 109.47087 * 149.97543 * 5 4 3 38 38 H 1.07995 * 126.83632 * 179.73737 * 6 4 3 39 39 H 0.97003 * 120.00041 * 0.02562 * 10 8 7 40 40 H 1.09006 * 109.50031 * 301.33950 * 13 11 10 41 41 H 1.08993 * 109.49795 * 61.43488 * 13 11 10 42 42 H 1.08996 * 109.58938 * 185.57685 * 14 13 11 43 43 H 1.08995 * 109.58553 * 65.14798 * 14 13 11 44 44 H 0.97008 * 119.99851 * 179.97438 * 19 18 16 45 45 H 1.09001 * 109.47309 * 179.28760 * 26 24 15 46 46 H 1.09002 * 109.46809 * 299.28866 * 26 24 15 47 47 H 1.08993 * 109.47375 * 59.28657 * 26 24 15 48 48 H 1.09003 * 109.49618 * 298.56203 * 27 11 10 49 49 H 1.08994 * 109.50149 * 58.63635 * 27 11 10 50 50 H 1.09000 * 109.46980 * 89.99972 * 29 28 3 51 51 H 1.09002 * 109.47464 * 209.99744 * 29 28 3 52 52 H 1.08998 * 109.47412 * 330.00444 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2786 2.1164 1.1196 5 6 2.1113 1.6400 2.5395 6 6 2.7099 3.3351 0.7490 7 6 2.7132 3.3430 -0.7178 8 6 3.1073 4.4575 -1.5961 9 8 3.0606 4.3255 -2.8042 10 7 3.5197 5.6237 -1.0610 11 6 3.9123 6.7323 -1.9345 12 1 4.3984 6.3371 -2.8265 13 6 2.6685 7.5259 -2.3413 14 6 3.0784 8.6631 -3.2823 15 7 4.1196 9.4667 -2.6273 16 6 3.9748 10.8220 -2.4951 17 1 4.4263 11.3341 -1.6582 18 6 3.2477 11.5375 -3.4365 19 7 2.9586 10.9913 -4.5985 20 14 2.6798 13.2755 -3.0542 21 1 3.7200 14.2428 -3.4873 22 1 1.4134 13.5531 -3.7784 23 1 2.4544 13.4124 -1.5927 24 6 5.3187 8.7886 -2.1165 25 1 5.8915 8.3821 -2.9500 26 6 6.1787 9.7853 -1.3369 27 6 4.8836 7.6499 -1.1886 28 6 2.2743 2.1068 -1.1051 29 6 2.1080 1.6360 -2.5270 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 1.8934 -0.5139 -0.8898 34 1 1.8933 -0.5137 0.8901 35 1 1.1021 1.8677 2.8826 36 1 2.2756 0.5633 2.5833 37 1 2.8351 2.1443 3.1797 38 1 2.9934 4.1476 1.4014 39 1 3.5573 5.7288 -0.0974 40 1 1.9669 6.8662 -2.8519 41 1 2.1956 7.9422 -1.4519 42 1 2.2131 9.2904 -3.4961 43 1 3.4686 8.2464 -4.2108 44 1 2.4502 11.4911 -5.2563 45 1 7.0614 9.2774 -0.9482 46 1 6.4872 10.5945 -1.9988 47 1 5.6004 10.1940 -0.5084 48 1 4.3898 8.0651 -0.3100 49 1 5.7584 7.0785 -0.8783 50 1 1.0988 1.8647 -2.8697 51 1 2.8319 2.1432 -3.1648 52 1 2.2727 0.5596 -2.5750 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000947515017.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:27 Heat of formation + Delta-G solvation = 15.508552 kcal Electronic energy + Delta-G solvation = -29399.017644 eV Core-core repulsion = 25592.214079 eV Total energy + Delta-G solvation = -3806.803565 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.61877 -39.16202 -37.40038 -34.41763 -34.33101 -32.79145 -32.29821 -31.25070 -29.85753 -29.40353 -28.88027 -26.29767 -25.28902 -24.48151 -23.88298 -22.19453 -21.62880 -20.58982 -19.69322 -19.28576 -18.52011 -17.01001 -16.29597 -15.95748 -15.50581 -15.41704 -15.01172 -14.81549 -14.24440 -13.89123 -13.72605 -13.65341 -13.52742 -13.35902 -13.31843 -13.14198 -13.07202 -12.75377 -12.60922 -12.52551 -12.49995 -12.28037 -11.84672 -11.66332 -11.50891 -11.45209 -11.11350 -10.99817 -10.83729 -10.78227 -10.56770 -10.23060 -10.01490 -9.94490 -9.62264 -9.57958 -9.19692 -8.72371 -8.49046 -8.30947 -8.01431 -6.54332 -5.69609 -3.13397 1.82304 2.29494 2.58243 3.42014 3.49216 3.50946 3.76416 3.85522 4.24761 4.44972 4.55414 4.55691 4.66881 4.73207 4.96978 5.10285 5.13950 5.16534 5.25333 5.30784 5.41071 5.49145 5.51267 5.52241 5.56469 5.60701 5.64899 5.73948 5.81141 5.91048 5.96089 6.12723 6.20766 6.26688 6.39867 6.41600 6.52699 6.61174 6.65495 6.75201 6.79720 6.92716 7.00488 7.07246 7.13894 7.18024 7.20104 7.49583 7.78428 7.89822 8.05160 8.55369 8.75813 9.30547 9.94502 10.52422 11.39077 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020833 B = 0.002436 C = 0.002370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.691821 B =11491.189360 C =11810.236962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.007 3.993 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.228 4.228 8 C 0.587 3.413 9 O -0.553 6.553 10 N -0.720 5.720 11 C 0.153 3.847 12 H 0.080 0.920 13 C -0.145 4.145 14 C 0.176 3.824 15 N -0.588 5.588 16 C -0.249 4.249 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.902 5.902 20 Si 0.899 3.101 21 H -0.288 1.288 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.171 3.829 25 H 0.026 0.974 26 C -0.135 4.135 27 C -0.133 4.133 28 C 0.102 3.898 29 C -0.092 4.092 30 H 0.074 0.926 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.080 0.920 38 H 0.143 0.857 39 H 0.393 0.607 40 H 0.052 0.948 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.020 0.980 44 H 0.253 0.747 45 H 0.037 0.963 46 H 0.062 0.938 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.054 0.946 50 H 0.075 0.925 51 H 0.102 0.898 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.218 -23.534 13.469 27.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.117 5.117 4 C -0.101 4.101 5 C -0.139 4.139 6 C -0.189 4.189 7 C -0.238 4.238 8 C 0.376 3.624 9 O -0.433 6.433 10 N -0.369 5.369 11 C 0.050 3.950 12 H 0.098 0.902 13 C -0.186 4.186 14 C 0.050 3.950 15 N -0.311 5.311 16 C -0.379 4.379 17 H 0.086 0.914 18 C -0.197 4.197 19 N -0.546 5.546 20 Si 0.729 3.271 21 H -0.215 1.215 22 H -0.217 1.217 23 H -0.206 1.206 24 C 0.064 3.936 25 H 0.044 0.956 26 C -0.192 4.192 27 C -0.173 4.173 28 C -0.014 4.014 29 C -0.149 4.149 30 H 0.093 0.907 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.109 0.891 34 H 0.108 0.892 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.098 0.902 38 H 0.161 0.839 39 H 0.226 0.774 40 H 0.071 0.929 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.038 0.962 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.081 0.919 47 H 0.072 0.928 48 H 0.081 0.919 49 H 0.072 0.928 50 H 0.094 0.906 51 H 0.121 0.879 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.445 -23.855 12.490 27.038 hybrid contribution -0.433 0.928 0.695 1.237 sum -2.878 -22.928 13.185 26.604 Atomic orbital electron populations 1.22153 0.94190 1.02951 1.03441 1.21846 0.95710 0.80865 1.04323 1.43607 1.51173 1.11775 1.05114 1.20131 1.08644 0.92750 0.88556 1.20301 1.02783 1.00968 0.89826 1.21773 1.07221 0.96687 0.93260 1.20224 1.15362 0.95068 0.93134 1.17331 0.76464 0.81601 0.87034 1.90725 1.55263 1.82632 1.14645 1.46066 1.67513 1.13245 1.10102 1.20973 0.95906 0.85059 0.93084 0.90214 1.22555 0.96449 0.98554 1.01025 1.20725 0.93430 0.89758 0.91112 1.44159 1.15212 1.03562 1.68178 1.19143 1.31174 0.82983 1.04592 0.91371 1.25103 1.02274 0.97579 0.94720 1.70033 1.42315 1.37284 1.05007 0.86354 0.78096 0.84952 0.77691 1.21488 1.21680 1.20570 1.20359 0.88880 0.91056 0.93327 0.95603 1.21787 0.97725 0.99485 1.00247 1.22367 0.97706 0.97482 0.99766 1.20261 1.00952 0.91115 0.89037 1.20554 1.04365 1.00302 0.89699 0.90723 0.91803 0.91642 0.89122 0.89212 0.91204 0.92042 0.90154 0.83935 0.77362 0.92919 0.92839 0.89528 0.96210 0.93727 0.94354 0.91943 0.92797 0.91933 0.92781 0.90641 0.87929 0.92304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.92 10.24 37.15 0.38 -0.54 16 2 C 0.09 0.57 6.30 -4.04 -0.03 0.55 16 3 N -0.44 -4.34 2.69 -107.96 -0.29 -4.63 16 4 C 0.01 0.07 6.85 -81.87 -0.56 -0.49 16 5 C -0.08 -0.51 10.06 36.00 0.36 -0.15 16 6 C -0.17 -1.95 10.45 -37.50 -0.39 -2.34 16 7 C -0.23 -3.30 6.29 -103.35 -0.65 -3.95 16 8 C 0.59 10.15 7.77 -12.59 -0.10 10.05 16 9 O -0.55 -11.25 14.47 5.26 0.08 -11.17 16 10 N -0.72 -11.63 5.07 -54.89 -0.28 -11.91 16 11 C 0.15 2.88 2.41 -67.89 -0.16 2.72 16 12 H 0.08 1.67 7.58 -51.93 -0.39 1.28 16 13 C -0.15 -3.08 5.65 -26.61 -0.15 -3.23 16 14 C 0.18 4.41 5.28 -3.71 -0.02 4.39 16 15 N -0.59 -14.81 2.99 -164.78 -0.49 -15.30 16 16 C -0.25 -6.77 8.58 -15.06 -0.13 -6.90 16 17 H 0.07 1.80 6.23 -52.49 -0.33 1.47 16 18 C 0.00 0.05 4.94 -17.43 -0.09 -0.04 16 19 N -0.90 -26.71 11.23 55.49 0.62 -26.08 16 20 Si 0.90 21.93 29.58 -169.99 -5.03 16.90 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 24 C 0.17 3.62 3.50 -67.60 -0.24 3.38 16 25 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 26 C -0.13 -2.56 7.95 37.16 0.30 -2.26 16 27 C -0.13 -2.37 4.84 -26.61 -0.13 -2.50 16 28 C 0.10 1.29 6.89 -81.88 -0.56 0.72 16 29 C -0.09 -1.03 9.52 36.00 0.34 -0.69 16 30 H 0.07 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.44 8.14 -51.92 -0.42 0.02 16 33 H 0.09 0.46 6.88 -51.93 -0.36 0.11 16 34 H 0.09 0.39 6.90 -51.93 -0.36 0.03 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.30 6.94 -51.93 -0.36 -0.06 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.14 1.42 7.69 -52.49 -0.40 1.02 16 39 H 0.39 5.33 7.72 -40.82 -0.32 5.01 16 40 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 41 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 45 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.06 1.28 7.67 -51.93 -0.40 0.88 16 47 H 0.05 1.02 7.40 -51.93 -0.38 0.64 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 49 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 51 H 0.10 1.39 6.46 -51.93 -0.34 1.06 16 52 H 0.06 0.48 6.92 -51.93 -0.36 0.12 16 LS Contribution 403.56 15.07 6.08 6.08 Total: -1.00 -33.26 403.56 -10.07 -43.33 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: -8.94 Total: 4.06 kcal Atomic # 6 Polarization: 0.54 SS G_CDS: -1.82 Total: -1.28 kcal Atomic # 7 Polarization: -57.48 SS G_CDS: -0.44 Total: -57.92 kcal Atomic # 8 Polarization: -11.25 SS G_CDS: 0.08 Total: -11.17 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.26 -10.07 -43.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000947515017.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.840 kcal (2) G-P(sol) polarization free energy of solvation -33.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds