Wall clock time and date at job start Tue Mar 31 2020 18:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46500 * 109.46798 * 2 1 4 4 C 1.36442 * 124.85479 * 264.97372 * 3 2 1 5 5 C 1.34481 * 108.85960 * 180.02562 * 4 3 2 6 6 C 1.46687 * 106.33556 * 0.02562 * 5 4 3 7 7 C 1.47254 * 126.94511 * 180.02562 * 6 5 4 8 8 O 1.21625 * 120.00027 * 211.47175 * 7 6 5 9 9 N 1.34775 * 120.00336 * 31.47077 * 7 6 5 10 10 C 1.46503 * 119.99956 * 5.17821 * 9 7 6 11 11 C 1.46501 * 120.00368 * 185.18076 * 9 7 6 12 12 H 1.08997 * 108.44673 * 2.31261 * 11 9 7 13 13 C 1.52564 * 108.51079 * 244.76513 * 11 9 7 14 14 C 1.50880 * 109.35848 * 153.73302 * 13 11 9 15 15 C 1.54302 * 110.23458 * 91.79489 * 14 13 11 16 16 N 1.47594 * 111.94527 * 319.70612 * 15 14 13 17 17 C 1.36933 * 118.64698 * 137.77716 * 16 15 14 18 18 H 1.07999 * 120.00379 * 208.01620 * 17 16 15 19 19 C 1.38813 * 120.00308 * 28.01262 * 17 16 15 20 20 N 1.31624 * 119.99355 * 12.87283 * 19 17 16 21 21 Si 1.86791 * 120.00577 * 192.87485 * 19 17 16 22 22 H 1.48503 * 109.47424 * 59.99577 * 21 19 17 23 23 H 1.48495 * 109.47525 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47151 * 300.00050 * 21 19 17 25 25 C 1.44584 * 122.71172 * 317.49393 * 16 15 14 26 26 C 1.47097 * 108.51283 * 119.99899 * 11 9 7 27 27 C 1.34662 * 124.84930 * 85.31861 * 3 2 1 28 28 C 1.50697 * 125.80266 * 0.02562 * 27 3 2 29 29 H 1.08997 * 109.47281 * 59.99604 * 1 2 3 30 30 H 1.09005 * 109.46877 * 180.02562 * 1 2 3 31 31 H 1.09009 * 109.46817 * 299.99641 * 1 2 3 32 32 H 1.08999 * 109.46728 * 240.00424 * 2 1 3 33 33 H 1.08999 * 109.46982 * 119.99945 * 2 1 3 34 34 H 1.08008 * 125.56996 * 0.02562 * 4 3 2 35 35 H 1.08007 * 126.82967 * 179.97438 * 5 4 3 36 36 H 1.09005 * 109.47178 * 275.32204 * 10 9 7 37 37 H 1.09011 * 109.46914 * 35.31569 * 10 9 7 38 38 H 1.08993 * 109.47324 * 155.31596 * 10 9 7 39 39 H 1.09000 * 109.49094 * 273.70068 * 13 11 9 40 40 H 1.08997 * 109.49527 * 33.74678 * 13 11 9 41 41 H 1.08995 * 109.37057 * 212.07402 * 14 13 11 42 42 H 1.08996 * 109.36804 * 331.82469 * 14 13 11 43 43 H 1.08999 * 109.13828 * 199.01161 * 15 14 13 44 44 H 1.09006 * 108.95446 * 80.27068 * 15 14 13 45 45 H 0.97001 * 119.99828 * 180.02562 * 20 19 17 46 46 H 1.09003 * 109.45021 * 211.02304 * 25 16 15 47 47 H 1.09001 * 109.44770 * 330.94657 * 25 16 15 48 48 H 1.09004 * 109.32724 * 63.79565 * 26 11 9 49 49 H 1.08998 * 109.18419 * 304.22936 * 26 11 9 50 50 H 1.09008 * 109.47391 * 270.19431 * 28 27 3 51 51 H 1.08993 * 109.47161 * 30.19587 * 28 27 3 52 52 H 1.09002 * 109.46871 * 150.19725 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3706 2.0837 -1.1153 5 6 2.7714 3.3132 -0.7461 6 6 2.6541 3.3639 0.7151 7 6 2.9759 4.5040 1.5899 8 8 3.3878 4.3081 2.7174 9 7 2.8140 5.7645 1.1411 10 6 2.2120 6.0025 -0.1731 11 6 3.2401 6.8967 1.9675 12 1 3.6950 6.5071 2.8781 13 6 2.0058 7.7058 2.3539 14 6 2.2697 8.4326 3.6495 15 6 2.8328 9.8410 3.3662 16 7 3.8028 9.8338 2.2538 17 6 3.7490 10.8424 1.3293 18 1 4.0843 10.6664 0.3179 19 6 3.2634 12.0913 1.6919 20 7 3.0938 12.3876 2.9631 21 14 2.8507 13.3512 0.3761 22 1 1.8008 12.8046 -0.5207 23 1 2.3538 14.5940 1.0191 24 1 4.0689 13.6563 -0.4166 25 6 4.8115 8.8088 2.1034 26 6 4.2569 7.6590 1.2267 27 6 2.1897 2.1368 1.1014 28 6 1.9144 1.7046 2.5186 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 2.3337 1.7130 -2.1291 35 1 3.1127 4.1054 -1.3962 36 1 2.9807 5.9332 -0.9429 37 1 1.4416 5.2544 -0.3607 38 1 1.7658 6.9967 -0.1937 39 1 1.7850 8.4295 1.5694 40 1 1.1558 7.0351 2.4795 41 1 1.3393 8.5214 4.2103 42 1 2.9944 7.8703 4.2383 43 1 3.3256 10.2160 4.2632 44 1 2.0084 10.5075 3.1125 45 1 2.7541 13.2601 3.2166 46 1 5.6941 9.2354 1.6267 47 1 5.0820 8.4191 3.0847 48 1 3.8088 8.0766 0.3251 49 1 5.0726 6.9917 0.9485 50 1 0.8811 1.9382 2.7756 51 1 2.0773 0.6307 2.6091 52 1 2.5856 2.2323 3.1962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948705970.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:04:13 Heat of formation + Delta-G solvation = 38.095448 kcal Electronic energy + Delta-G solvation = -30045.290342 eV Core-core repulsion = 26239.466218 eV Total energy + Delta-G solvation = -3805.824124 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 2.04 seconds Orbital eigenvalues (eV) -41.54887 -39.55741 -37.40955 -35.16628 -34.38122 -32.73377 -31.70972 -31.53099 -30.44463 -29.26846 -26.86601 -26.43834 -25.75252 -24.44025 -23.75344 -23.05358 -21.73949 -20.13391 -19.23907 -19.09952 -18.34030 -17.20869 -16.60139 -16.21516 -15.73174 -15.39934 -15.02462 -14.70261 -14.67590 -14.02111 -13.83456 -13.74741 -13.41130 -13.29450 -13.16025 -12.94479 -12.93123 -12.71476 -12.54274 -12.45313 -12.26110 -12.15716 -11.93918 -11.72488 -11.62336 -11.57132 -11.22970 -11.12800 -10.78088 -10.52985 -10.33513 -10.08029 -10.05315 -9.69777 -9.65925 -9.50581 -9.34751 -8.65359 -8.34463 -8.29227 -8.09857 -6.55894 -5.70632 -3.16673 1.83861 2.38794 2.60747 3.41101 3.45819 3.47026 3.47636 3.65650 4.23700 4.50930 4.54973 4.56870 4.72154 4.81105 5.02006 5.10851 5.12898 5.21710 5.40489 5.43205 5.45067 5.47639 5.51709 5.56955 5.59797 5.68660 5.83842 5.85212 5.88878 5.95783 6.00012 6.10004 6.16010 6.16667 6.37492 6.47567 6.61579 6.68545 6.72078 6.79596 6.88974 6.93783 6.96772 7.01743 7.12007 7.13695 7.16700 7.54951 7.81074 7.86516 7.89523 8.55674 8.62953 9.32185 9.98726 10.45078 11.36281 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.023338 B = 0.002653 C = 0.002541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.453831 B =10550.083227 C =11018.240181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.097 3.903 3 N -0.443 5.443 4 C -0.023 4.023 5 C -0.164 4.164 6 C -0.226 4.226 7 C 0.588 3.412 8 O -0.556 6.556 9 N -0.606 5.606 10 C 0.084 3.916 11 C 0.156 3.844 12 H 0.086 0.914 13 C -0.107 4.107 14 C -0.141 4.141 15 C 0.179 3.821 16 N -0.590 5.590 17 C -0.256 4.256 18 H 0.063 0.937 19 C 0.004 3.996 20 N -0.905 5.905 21 Si 0.901 3.099 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.283 1.283 25 C 0.162 3.838 26 C -0.151 4.151 27 C 0.095 3.905 28 C -0.097 4.097 29 H 0.063 0.937 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.091 0.909 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.147 0.853 36 H 0.050 0.950 37 H 0.067 0.933 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.045 0.955 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.025 0.975 44 H 0.074 0.926 45 H 0.253 0.747 46 H 0.048 0.952 47 H 0.034 0.966 48 H 0.063 0.937 49 H 0.048 0.952 50 H 0.072 0.928 51 H 0.062 0.938 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.502 -24.920 -7.214 26.520 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.121 5.121 4 C -0.149 4.149 5 C -0.189 4.189 6 C -0.235 4.235 7 C 0.378 3.622 8 O -0.436 6.436 9 N -0.337 5.337 10 C -0.059 4.059 11 C 0.055 3.945 12 H 0.104 0.896 13 C -0.146 4.146 14 C -0.181 4.181 15 C 0.054 3.946 16 N -0.311 5.311 17 C -0.386 4.386 18 H 0.081 0.919 19 C -0.194 4.194 20 N -0.550 5.550 21 Si 0.731 3.269 22 H -0.211 1.211 23 H -0.217 1.217 24 H -0.210 1.210 25 C 0.033 3.967 26 C -0.193 4.193 27 C -0.021 4.021 28 C -0.154 4.154 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.069 0.931 37 H 0.086 0.914 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.064 0.936 41 H 0.071 0.929 42 H 0.065 0.935 43 H 0.043 0.957 44 H 0.092 0.908 45 H 0.063 0.937 46 H 0.067 0.933 47 H 0.052 0.948 48 H 0.082 0.918 49 H 0.067 0.933 50 H 0.090 0.910 51 H 0.081 0.919 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.466 -25.172 -6.550 26.579 hybrid contribution -0.322 0.688 -1.045 1.292 sum -5.788 -24.484 -7.595 26.280 Atomic orbital electron populations 1.22171 0.94266 1.02963 1.03401 1.21853 0.95620 0.80690 1.04330 1.43681 1.50695 1.11834 1.05840 1.21651 1.08670 0.93411 0.91136 1.22190 1.06284 0.97141 0.93246 1.20177 1.15167 0.94570 0.93622 1.17436 0.77021 0.82158 0.85596 1.90698 1.47807 1.85113 1.19970 1.48077 1.60979 1.05751 1.18926 1.21818 0.97580 1.02314 0.84189 1.20117 0.95184 0.84924 0.94298 0.89601 1.21245 0.95789 0.98182 0.99367 1.22046 0.99988 0.99932 0.96103 1.21093 0.92923 0.90559 0.89994 1.43654 1.32463 1.25587 1.29409 1.19147 1.39533 0.89144 0.90760 0.91915 1.25083 1.01863 0.96823 0.95656 1.70046 1.49342 1.21383 1.14213 0.86397 0.78375 0.80911 0.81190 1.21126 1.21741 1.20975 1.20577 0.91408 0.88652 0.96024 1.21850 0.97616 0.98842 1.00954 1.20197 1.02174 0.90553 0.89187 1.20557 1.03351 1.01222 0.90252 0.91750 0.90747 0.91726 0.89085 0.89331 0.81917 0.83495 0.93119 0.91426 0.90924 0.90646 0.93593 0.92871 0.93464 0.95737 0.90804 0.93693 0.93334 0.94804 0.91802 0.93286 0.90979 0.91928 0.88002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.16 0.38 -0.45 16 2 C 0.10 0.53 6.46 -4.04 -0.03 0.51 16 3 N -0.44 -4.13 2.69 -112.52 -0.30 -4.43 16 4 C -0.02 -0.21 11.32 -16.83 -0.19 -0.40 16 5 C -0.16 -1.89 8.96 -37.50 -0.34 -2.23 16 6 C -0.23 -3.20 5.47 -103.35 -0.57 -3.76 16 7 C 0.59 10.09 7.51 -12.60 -0.09 10.00 16 8 O -0.56 -11.11 14.59 5.26 0.08 -11.03 16 9 N -0.61 -9.92 2.59 -178.81 -0.46 -10.38 16 10 C 0.08 1.13 7.94 59.85 0.48 1.60 16 11 C 0.16 2.87 1.94 -70.99 -0.14 2.73 16 12 H 0.09 1.75 6.05 -51.93 -0.31 1.44 16 13 C -0.11 -2.03 4.38 -28.02 -0.12 -2.15 16 14 C -0.14 -2.83 5.71 -27.11 -0.15 -2.99 16 15 C 0.18 4.34 4.69 -2.76 -0.01 4.33 16 16 N -0.59 -14.61 2.26 -171.87 -0.39 -15.00 16 17 C -0.26 -6.91 9.44 -15.06 -0.14 -7.05 16 18 H 0.06 1.67 7.86 -52.49 -0.41 1.25 16 19 C 0.00 0.11 4.93 -17.43 -0.09 0.03 16 20 N -0.91 -26.25 10.94 55.49 0.61 -25.64 16 21 Si 0.90 21.68 29.57 -169.99 -5.03 16.65 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 24 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 25 C 0.16 3.49 5.65 -4.08 -0.02 3.47 16 26 C -0.15 -2.84 4.88 -28.58 -0.14 -2.98 16 27 C 0.09 1.14 6.88 -81.88 -0.56 0.58 16 28 C -0.10 -1.02 9.83 36.00 0.35 -0.66 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.09 0.34 8.11 -51.93 -0.42 -0.08 16 33 H 0.09 0.42 7.04 -51.93 -0.37 0.05 16 34 H 0.16 1.00 8.06 -52.48 -0.42 0.58 16 35 H 0.15 1.53 6.23 -52.48 -0.33 1.20 16 36 H 0.05 0.61 6.87 -51.93 -0.36 0.25 16 37 H 0.07 0.82 6.43 -51.92 -0.33 0.48 16 38 H 0.07 1.01 7.21 -51.93 -0.37 0.63 16 39 H 0.07 1.56 7.21 -51.93 -0.37 1.18 16 40 H 0.05 0.82 8.05 -51.93 -0.42 0.41 16 41 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.93 7.31 -51.93 -0.38 0.56 16 43 H 0.02 0.65 8.01 -51.93 -0.42 0.23 16 44 H 0.07 1.98 6.36 -51.93 -0.33 1.64 16 45 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 46 H 0.05 1.05 7.99 -51.93 -0.41 0.64 16 47 H 0.03 0.71 8.06 -51.93 -0.42 0.30 16 48 H 0.06 1.24 7.58 -51.93 -0.39 0.84 16 49 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 50 H 0.07 0.70 8.14 -51.92 -0.42 0.27 16 51 H 0.06 0.49 7.02 -51.93 -0.36 0.13 16 52 H 0.10 1.33 6.44 -51.93 -0.33 1.00 16 LS Contribution 395.25 15.07 5.96 5.96 Total: -1.00 -32.42 395.25 -9.77 -42.19 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -8.84 Total: 1.11 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.39 Total: 0.57 kcal Atomic # 7 Polarization: -54.90 SS G_CDS: -0.55 Total: -55.45 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.03 Total: 16.65 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -32.42 -9.77 -42.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948705970.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.288 kcal (2) G-P(sol) polarization free energy of solvation -32.423 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.770 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.04 seconds