Wall clock time and date at job start Tue Mar 31 2020 18:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47049 * 2 1 4 4 C 1.36450 * 124.85020 * 90.02564 * 3 2 1 5 5 C 1.50707 * 125.57167 * 0.02562 * 4 3 2 6 6 C 1.34487 * 108.85689 * 179.97438 * 4 3 2 7 7 C 1.46677 * 106.33420 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94386 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00063 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00197 * 0.03159 * 8 7 6 11 11 C 1.46496 * 120.00445 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.52029 * 34.91372 * 11 10 8 13 13 C 1.53190 * 109.49752 * 274.83538 * 11 10 8 14 14 N 1.46928 * 108.77410 * 294.68401 * 13 11 10 15 15 C 1.36932 * 120.63513 * 126.37152 * 14 13 11 16 16 H 1.07999 * 120.00050 * 207.68577 * 15 14 13 17 17 C 1.38816 * 119.99646 * 27.68307 * 15 14 13 18 18 N 1.31618 * 120.00302 * 17.36799 * 17 15 14 19 19 Si 1.86804 * 119.99860 * 197.36312 * 17 15 14 20 20 H 1.48503 * 109.46798 * 89.99905 * 19 17 15 21 21 H 1.48498 * 109.47258 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47227 * 330.00632 * 19 17 15 23 23 C 1.46925 * 118.73425 * 306.38748 * 14 13 11 24 24 C 1.53190 * 108.77588 * 53.61335 * 23 14 13 25 25 C 1.53036 * 109.49924 * 154.99496 * 11 10 8 26 26 H 1.09005 * 109.46406 * 178.59452 * 25 11 10 27 27 C 1.53003 * 109.46317 * 298.56550 * 25 11 10 28 28 C 1.34661 * 124.85651 * 270.31295 * 3 2 1 29 29 C 1.50704 * 125.79820 * 0.05485 * 28 3 2 30 30 H 1.09004 * 109.47120 * 299.99509 * 1 2 3 31 31 H 1.09002 * 109.47384 * 59.99399 * 1 2 3 32 32 H 1.08997 * 109.47250 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47120 * 240.00491 * 2 1 3 34 34 H 1.09000 * 109.47057 * 120.00177 * 2 1 3 35 35 H 1.09005 * 109.46692 * 269.99923 * 5 4 3 36 36 H 1.09002 * 109.46796 * 29.99542 * 5 4 3 37 37 H 1.08994 * 109.46890 * 149.99776 * 5 4 3 38 38 H 1.08005 * 126.82857 * 179.97438 * 6 4 3 39 39 H 0.97003 * 119.99365 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.58663 * 54.46833 * 13 11 10 41 41 H 1.09003 * 109.58767 * 174.89351 * 13 11 10 42 42 H 0.97003 * 120.00335 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58739 * 173.39527 * 23 14 13 44 44 H 1.08998 * 109.59192 * 293.67699 * 23 14 13 45 45 H 1.08997 * 109.50028 * 185.40939 * 24 23 14 46 46 H 1.09004 * 109.50256 * 65.31347 * 24 23 14 47 47 H 1.09004 * 109.46835 * 59.99882 * 27 25 11 48 48 H 1.09000 * 109.46948 * 300.00537 * 27 25 11 49 49 H 1.08996 * 109.47459 * 180.02562 * 27 25 11 50 50 H 1.08998 * 109.46720 * 270.18898 * 29 28 3 51 51 H 1.08994 * 109.47129 * 30.18691 * 29 28 3 52 52 H 1.09001 * 109.47215 * 150.19078 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2787 2.1161 1.1198 5 6 2.1115 1.6396 2.5397 6 6 2.7100 3.3349 0.7492 7 6 2.7120 3.3434 -0.7175 8 6 3.1056 4.4582 -1.5956 9 8 3.0579 4.3267 -2.8038 10 7 3.5189 5.6241 -1.0604 11 6 3.9110 6.7329 -1.9339 12 1 3.2861 6.7315 -2.8270 13 6 5.3799 6.5711 -2.3374 14 7 6.2174 6.7051 -1.1376 15 6 7.1250 5.7341 -0.8082 16 1 7.4030 5.5827 0.2243 17 6 7.6878 4.9445 -1.8016 18 7 7.6297 5.3282 -3.0592 19 14 8.5277 3.3373 -1.3533 20 1 7.5341 2.2340 -1.3849 21 1 9.6111 3.0559 -2.3291 22 1 9.1053 3.4441 0.0105 23 6 6.0622 7.9006 -0.2978 24 6 4.5856 8.0475 0.0829 25 6 3.7338 8.0576 -1.1885 26 1 4.0492 8.8805 -1.8301 27 6 2.2614 8.2390 -0.8141 28 6 2.2692 2.1088 -1.1050 29 6 2.0943 1.6411 -2.5269 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.1021 1.8670 2.8827 36 1 2.2762 0.5630 2.5834 37 1 2.8351 2.1442 3.1798 38 1 2.9969 4.1462 1.4019 39 1 3.5567 5.7289 -0.0968 40 1 5.5309 5.5866 -2.7803 41 1 5.6480 7.3435 -3.0583 42 1 8.0226 4.7762 -3.7534 43 1 6.6633 7.7934 0.6052 44 1 6.3883 8.7811 -0.8514 45 1 4.4409 8.9818 0.6252 46 1 4.2874 7.2101 0.7139 47 1 1.9456 7.4160 -0.1728 48 1 1.6547 8.2474 -1.7196 49 1 2.1349 9.1827 -0.2836 50 1 3.0197 1.1821 -2.8747 51 1 1.2869 0.9104 -2.5724 52 1 1.8501 2.4926 -3.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967272773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:39 Heat of formation + Delta-G solvation = 17.219571 kcal Electronic energy + Delta-G solvation = -30859.591554 eV Core-core repulsion = 27052.862184 eV Total energy + Delta-G solvation = -3806.729370 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30857 -39.12270 -37.17013 -34.12163 -33.97644 -32.69387 -32.35576 -30.90602 -29.71099 -29.12444 -28.53482 -27.17332 -24.80114 -23.94836 -23.65644 -22.21110 -21.41114 -20.95581 -19.83349 -18.59962 -18.28864 -16.84339 -16.44427 -15.78454 -15.30905 -14.88339 -14.74140 -14.66959 -13.89488 -13.77612 -13.62641 -13.48794 -13.36882 -13.22748 -13.16855 -12.97035 -12.95055 -12.63321 -12.50481 -12.35344 -12.25822 -12.04786 -11.79747 -11.56905 -11.49773 -11.45422 -11.26284 -11.13701 -10.92810 -10.80100 -10.64596 -10.38303 -10.10903 -9.80582 -9.54956 -9.36028 -9.01858 -8.38778 -8.33323 -8.07187 -7.69615 -6.52291 -5.64969 -3.07044 2.15816 2.62592 2.86836 3.46315 3.52648 3.53679 4.12444 4.32217 4.47408 4.60837 4.70162 4.76222 4.92722 5.01916 5.21265 5.30443 5.31221 5.33224 5.37104 5.42084 5.46928 5.47563 5.54201 5.66134 5.69008 5.73739 5.81496 5.85051 5.91706 6.01167 6.05588 6.12415 6.13605 6.24290 6.26277 6.42349 6.49000 6.50506 6.57658 6.70679 6.82436 6.87144 7.01163 7.07801 7.20990 7.31961 7.44795 7.60443 7.82263 7.93640 8.47932 8.59071 9.18866 9.33829 9.98448 10.53918 11.42757 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004749 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.675829 B = 5894.110335 C = 7105.160301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.002 3.998 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.217 4.217 8 C 0.590 3.410 9 O -0.560 6.560 10 N -0.694 5.694 11 C 0.128 3.872 12 H 0.074 0.926 13 C 0.161 3.839 14 N -0.586 5.586 15 C -0.249 4.249 16 H 0.062 0.938 17 C 0.008 3.992 18 N -0.898 5.898 19 Si 0.895 3.105 20 H -0.288 1.288 21 H -0.292 1.292 22 H -0.281 1.281 23 C 0.143 3.857 24 C -0.128 4.128 25 C -0.094 4.094 26 H 0.075 0.925 27 C -0.143 4.143 28 C 0.097 3.903 29 C -0.090 4.090 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.059 0.941 37 H 0.079 0.921 38 H 0.141 0.859 39 H 0.393 0.607 40 H 0.097 0.903 41 H 0.022 0.978 42 H 0.252 0.748 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.052 0.948 46 H 0.054 0.946 47 H 0.051 0.949 48 H 0.049 0.951 49 H 0.047 0.953 50 H 0.074 0.926 51 H 0.055 0.945 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.935 -6.306 9.031 19.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.185 4.185 7 C -0.227 4.227 8 C 0.378 3.622 9 O -0.441 6.441 10 N -0.343 5.343 11 C 0.022 3.978 12 H 0.092 0.908 13 C 0.034 3.966 14 N -0.309 5.309 15 C -0.379 4.379 16 H 0.080 0.920 17 C -0.191 4.191 18 N -0.542 5.542 19 Si 0.726 3.274 20 H -0.216 1.216 21 H -0.219 1.219 22 H -0.206 1.206 23 C 0.017 3.983 24 C -0.168 4.168 25 C -0.113 4.113 26 H 0.093 0.907 27 C -0.201 4.201 28 C -0.018 4.018 29 C -0.147 4.147 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.078 0.922 37 H 0.098 0.902 38 H 0.159 0.841 39 H 0.228 0.772 40 H 0.115 0.885 41 H 0.040 0.960 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.035 0.965 45 H 0.070 0.930 46 H 0.073 0.927 47 H 0.071 0.929 48 H 0.068 0.932 49 H 0.066 0.934 50 H 0.092 0.908 51 H 0.074 0.926 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -15.971 -6.785 8.062 19.133 hybrid contribution 0.621 -0.860 0.730 1.288 sum -15.350 -7.645 8.792 19.271 Atomic orbital electron populations 1.22158 0.94451 1.02727 1.03276 1.21799 0.95435 0.81158 1.04265 1.43526 1.51715 1.11476 1.05129 1.20076 1.09228 0.92749 0.88437 1.20274 1.02448 1.00897 0.90039 1.21750 1.06548 0.96756 0.93410 1.20241 1.14170 0.95163 0.93122 1.17195 0.76450 0.81638 0.86896 1.90684 1.56393 1.82332 1.14692 1.45554 1.65986 1.12866 1.09874 1.21711 0.99650 0.84122 0.92328 0.90842 1.21205 0.84399 1.02827 0.88143 1.43961 1.41733 1.18387 1.26809 1.19066 1.17337 1.09730 0.91723 0.92008 1.24947 0.98577 0.99916 0.95655 1.70005 1.47886 1.36880 0.99442 0.86396 0.78748 0.84918 0.77360 1.21560 1.21897 1.20612 1.20913 0.92419 0.90236 0.94780 1.22072 0.98341 0.99994 0.96360 1.21305 0.94587 0.97589 0.97794 0.90660 1.21838 0.96485 1.00755 1.00987 1.20208 1.01686 0.91053 0.88898 1.20522 1.01596 1.02732 0.89885 0.91867 0.91753 0.90918 0.89273 0.89311 0.91470 0.92177 0.90210 0.84132 0.77195 0.88456 0.96006 0.93749 0.92973 0.96547 0.92960 0.92704 0.92949 0.93203 0.93351 0.90766 0.92567 0.88004 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.10 0.86 6.08 -4.04 -0.02 0.83 16 3 N -0.44 -5.84 2.69 -107.96 -0.29 -6.13 16 4 C 0.00 0.03 6.85 -81.86 -0.56 -0.53 16 5 C -0.08 -0.73 10.06 36.01 0.36 -0.37 16 6 C -0.16 -2.52 10.45 -37.50 -0.39 -2.92 16 7 C -0.22 -4.02 6.29 -103.36 -0.65 -4.67 16 8 C 0.59 12.48 7.78 -12.59 -0.10 12.38 16 9 O -0.56 -13.35 14.48 5.25 0.08 -13.27 16 10 N -0.69 -13.61 4.25 -54.82 -0.23 -13.85 16 11 C 0.13 2.59 2.24 -67.82 -0.15 2.44 16 12 H 0.07 1.54 7.58 -51.92 -0.39 1.15 16 13 C 0.16 4.03 4.91 -3.71 -0.02 4.01 16 14 N -0.59 -14.74 2.91 -172.32 -0.50 -15.24 16 15 C -0.25 -6.97 9.59 -15.06 -0.14 -7.12 16 16 H 0.06 1.71 7.89 -52.49 -0.41 1.29 16 17 C 0.01 0.23 4.91 -17.43 -0.09 0.15 16 18 N -0.90 -27.34 11.19 55.49 0.62 -26.72 16 19 Si 0.90 22.99 29.59 -169.99 -5.03 17.96 16 20 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 21 H -0.29 -7.53 7.11 56.52 0.40 -7.13 16 22 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 23 C 0.14 2.96 6.52 -3.71 -0.02 2.94 16 24 C -0.13 -2.14 5.20 -26.61 -0.14 -2.27 16 25 C -0.09 -1.56 2.48 -90.58 -0.22 -1.78 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 C -0.14 -1.99 9.05 37.16 0.34 -1.65 16 28 C 0.10 1.58 6.89 -81.88 -0.56 1.01 16 29 C -0.09 -1.32 9.26 36.01 0.33 -0.98 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 32 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.09 0.74 7.51 -51.93 -0.39 0.35 16 34 H 0.09 0.66 6.90 -51.93 -0.36 0.30 16 35 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.48 6.94 -51.93 -0.36 0.11 16 37 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.14 2.00 7.70 -52.48 -0.40 1.59 16 39 H 0.39 7.12 5.76 -40.82 -0.24 6.89 16 40 H 0.10 2.88 6.04 -51.93 -0.31 2.56 16 41 H 0.02 0.58 8.14 -51.93 -0.42 0.15 16 42 H 0.25 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 47 H 0.05 0.73 7.55 -51.93 -0.39 0.33 16 48 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 51 H 0.06 0.62 7.56 -51.93 -0.39 0.23 16 52 H 0.10 1.69 6.47 -51.93 -0.34 1.35 16 LS Contribution 403.39 15.07 6.08 6.08 Total: -1.00 -34.09 403.39 -9.88 -43.97 By element: Atomic # 1 Polarization: 15.52 SS G_CDS: -8.94 Total: 6.58 kcal Atomic # 6 Polarization: 2.27 SS G_CDS: -1.66 Total: 0.61 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.40 Total: -61.93 kcal Atomic # 8 Polarization: -13.35 SS G_CDS: 0.08 Total: -13.27 kcal Atomic # 14 Polarization: 22.99 SS G_CDS: -5.03 Total: 17.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.09 -9.88 -43.97 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.193 kcal (2) G-P(sol) polarization free energy of solvation -34.091 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.973 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.220 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds