Wall clock time and date at job start Tue Mar 31 2020 18:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47049 * 2 1 4 4 C 1.36450 * 124.85020 * 90.02564 * 3 2 1 5 5 C 1.50707 * 125.57167 * 0.02562 * 4 3 2 6 6 C 1.34487 * 108.85689 * 179.97438 * 4 3 2 7 7 C 1.46677 * 106.33420 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.94386 * 179.97438 * 7 6 4 9 9 O 1.21627 * 120.00063 * 180.02562 * 8 7 6 10 10 N 1.34778 * 120.00197 * 0.03159 * 8 7 6 11 11 C 1.46496 * 120.00445 * 179.97438 * 10 8 7 12 12 H 1.09008 * 109.52029 * 34.91372 * 11 10 8 13 13 C 1.53190 * 109.49752 * 274.83538 * 11 10 8 14 14 N 1.46928 * 108.77410 * 294.68401 * 13 11 10 15 15 C 1.36932 * 120.63513 * 126.37152 * 14 13 11 16 16 H 1.07999 * 120.00050 * 207.68577 * 15 14 13 17 17 C 1.38816 * 119.99646 * 27.68307 * 15 14 13 18 18 N 1.31618 * 120.00302 * 17.36799 * 17 15 14 19 19 Si 1.86804 * 119.99860 * 197.36312 * 17 15 14 20 20 H 1.48503 * 109.46798 * 89.99905 * 19 17 15 21 21 H 1.48498 * 109.47258 * 209.99857 * 19 17 15 22 22 H 1.48497 * 109.47227 * 330.00632 * 19 17 15 23 23 C 1.46925 * 118.73425 * 306.38748 * 14 13 11 24 24 C 1.53190 * 108.77588 * 53.61335 * 23 14 13 25 25 C 1.53036 * 109.49924 * 154.99496 * 11 10 8 26 26 H 1.09005 * 109.46406 * 178.59452 * 25 11 10 27 27 C 1.53003 * 109.46317 * 298.56550 * 25 11 10 28 28 C 1.34661 * 124.85651 * 270.31295 * 3 2 1 29 29 C 1.50704 * 125.79820 * 0.05485 * 28 3 2 30 30 H 1.09004 * 109.47120 * 299.99509 * 1 2 3 31 31 H 1.09002 * 109.47384 * 59.99399 * 1 2 3 32 32 H 1.08997 * 109.47250 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47120 * 240.00491 * 2 1 3 34 34 H 1.09000 * 109.47057 * 120.00177 * 2 1 3 35 35 H 1.09005 * 109.46692 * 269.99923 * 5 4 3 36 36 H 1.09002 * 109.46796 * 29.99542 * 5 4 3 37 37 H 1.08994 * 109.46890 * 149.99776 * 5 4 3 38 38 H 1.08005 * 126.82857 * 179.97438 * 6 4 3 39 39 H 0.97003 * 119.99365 * 359.97438 * 10 8 7 40 40 H 1.09005 * 109.58663 * 54.46833 * 13 11 10 41 41 H 1.09003 * 109.58767 * 174.89351 * 13 11 10 42 42 H 0.97003 * 120.00335 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.58739 * 173.39527 * 23 14 13 44 44 H 1.08998 * 109.59192 * 293.67699 * 23 14 13 45 45 H 1.08997 * 109.50028 * 185.40939 * 24 23 14 46 46 H 1.09004 * 109.50256 * 65.31347 * 24 23 14 47 47 H 1.09004 * 109.46835 * 59.99882 * 27 25 11 48 48 H 1.09000 * 109.46948 * 300.00537 * 27 25 11 49 49 H 1.08996 * 109.47459 * 180.02562 * 27 25 11 50 50 H 1.08998 * 109.46720 * 270.18898 * 29 28 3 51 51 H 1.08994 * 109.47129 * 30.18691 * 29 28 3 52 52 H 1.09001 * 109.47215 * 150.19078 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2787 2.1161 1.1198 5 6 2.1115 1.6396 2.5397 6 6 2.7100 3.3349 0.7492 7 6 2.7120 3.3434 -0.7175 8 6 3.1056 4.4582 -1.5956 9 8 3.0579 4.3267 -2.8038 10 7 3.5189 5.6241 -1.0604 11 6 3.9110 6.7329 -1.9339 12 1 3.2861 6.7315 -2.8270 13 6 5.3799 6.5711 -2.3374 14 7 6.2174 6.7051 -1.1376 15 6 7.1250 5.7341 -0.8082 16 1 7.4030 5.5827 0.2243 17 6 7.6878 4.9445 -1.8016 18 7 7.6297 5.3282 -3.0592 19 14 8.5277 3.3373 -1.3533 20 1 7.5341 2.2340 -1.3849 21 1 9.6111 3.0559 -2.3291 22 1 9.1053 3.4441 0.0105 23 6 6.0622 7.9006 -0.2978 24 6 4.5856 8.0475 0.0829 25 6 3.7338 8.0576 -1.1885 26 1 4.0492 8.8805 -1.8301 27 6 2.2614 8.2390 -0.8141 28 6 2.2692 2.1088 -1.1050 29 6 2.0943 1.6411 -2.5269 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8934 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8900 35 1 1.1021 1.8670 2.8827 36 1 2.2762 0.5630 2.5834 37 1 2.8351 2.1442 3.1798 38 1 2.9969 4.1462 1.4019 39 1 3.5567 5.7289 -0.0968 40 1 5.5309 5.5866 -2.7803 41 1 5.6480 7.3435 -3.0583 42 1 8.0226 4.7762 -3.7534 43 1 6.6633 7.7934 0.6052 44 1 6.3883 8.7811 -0.8514 45 1 4.4409 8.9818 0.6252 46 1 4.2874 7.2101 0.7139 47 1 1.9456 7.4160 -0.1728 48 1 1.6547 8.2474 -1.7196 49 1 2.1349 9.1827 -0.2836 50 1 3.0197 1.1821 -2.8747 51 1 1.2869 0.9104 -2.5724 52 1 1.8501 2.4926 -3.1621 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000967272773.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:37 Heat of formation + Delta-G solvation = -2.944535 kcal Electronic energy + Delta-G solvation = -30860.465936 eV Core-core repulsion = 27052.862184 eV Total energy + Delta-G solvation = -3807.603751 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.42807 -40.73806 -38.83001 -35.88108 -35.01768 -34.18482 -33.54426 -32.80409 -31.12713 -30.16191 -29.76159 -28.86568 -26.17073 -25.61207 -24.61722 -23.71579 -22.78576 -22.63094 -21.09659 -20.24497 -19.54017 -18.59458 -17.95615 -17.03881 -16.69656 -16.50300 -16.27597 -15.72014 -15.70567 -15.40842 -15.14224 -14.76270 -14.68375 -14.50909 -14.36101 -14.07815 -14.07033 -13.96621 -13.69654 -13.54678 -13.43255 -13.15787 -13.12402 -13.00039 -12.86936 -12.70634 -12.62751 -12.49830 -12.45908 -12.24606 -12.20783 -12.08977 -11.91427 -11.54445 -11.26131 -11.04080 -10.69946 -10.51127 -9.87556 -9.44682 -8.88844 -8.61661 -7.84313 -5.28532 0.83935 1.36809 1.41799 1.47617 1.48878 1.87113 2.48592 2.60113 2.80285 3.31325 3.71403 3.78141 3.78958 3.89995 3.93839 4.02124 4.10963 4.16057 4.18364 4.33320 4.35506 4.51022 4.55570 4.62284 4.65293 4.69294 4.74481 4.77797 4.83159 4.86263 4.87083 4.94991 4.96885 4.99555 5.03285 5.12290 5.13790 5.17686 5.24509 5.26302 5.28323 5.37642 5.48870 5.55322 5.61995 5.74933 5.86325 5.89752 6.18137 6.40963 6.43613 6.90888 7.16186 7.59141 7.90043 8.40616 9.20391 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010122 B = 0.004749 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2765.675829 B = 5894.110335 C = 7105.160301 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.084 3.916 3 N -0.433 5.433 4 C 0.016 3.984 5 C -0.077 4.077 6 C -0.186 4.186 7 C -0.261 4.261 8 C 0.579 3.421 9 O -0.602 6.602 10 N -0.685 5.685 11 C 0.138 3.862 12 H 0.059 0.941 13 C 0.173 3.827 14 N -0.599 5.599 15 C -0.246 4.246 16 H 0.068 0.932 17 C -0.050 4.050 18 N -0.934 5.934 19 Si 0.953 3.047 20 H -0.300 1.300 21 H -0.295 1.295 22 H -0.260 1.260 23 C 0.136 3.864 24 C -0.115 4.115 25 C -0.087 4.087 26 H 0.076 0.924 27 C -0.133 4.133 28 C 0.087 3.913 29 C -0.084 4.084 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.099 0.901 33 H 0.095 0.905 34 H 0.113 0.887 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.149 0.851 39 H 0.402 0.598 40 H 0.046 0.954 41 H -0.005 1.005 42 H 0.244 0.756 43 H 0.057 0.943 44 H 0.014 0.986 45 H 0.092 0.908 46 H 0.059 0.941 47 H 0.052 0.948 48 H 0.048 0.952 49 H 0.077 0.923 50 H 0.064 0.936 51 H 0.093 0.907 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.826 -7.264 12.783 23.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.036 4.036 3 N -0.110 5.110 4 C -0.092 4.092 5 C -0.134 4.134 6 C -0.210 4.210 7 C -0.271 4.271 8 C 0.369 3.631 9 O -0.486 6.486 10 N -0.334 5.334 11 C 0.031 3.969 12 H 0.077 0.923 13 C 0.046 3.954 14 N -0.323 5.323 15 C -0.377 4.377 16 H 0.086 0.914 17 C -0.245 4.245 18 N -0.580 5.580 19 Si 0.782 3.218 20 H -0.228 1.228 21 H -0.222 1.222 22 H -0.184 1.184 23 C 0.011 3.989 24 C -0.154 4.154 25 C -0.106 4.106 26 H 0.095 0.905 27 C -0.190 4.190 28 C -0.031 4.031 29 C -0.142 4.142 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.118 0.882 33 H 0.114 0.886 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.167 0.833 39 H 0.238 0.762 40 H 0.065 0.935 41 H 0.013 0.987 42 H 0.053 0.947 43 H 0.075 0.925 44 H 0.032 0.968 45 H 0.111 0.889 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.067 0.933 49 H 0.096 0.904 50 H 0.083 0.917 51 H 0.111 0.889 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.877 -7.729 11.888 22.818 hybrid contribution 1.192 -0.584 -0.415 1.390 sum -16.685 -8.312 11.474 21.889 Atomic orbital electron populations 1.22119 0.92895 1.04294 1.02610 1.22225 0.96684 0.78797 1.05876 1.43846 1.50272 1.12747 1.04117 1.20729 1.06430 0.91833 0.90221 1.20424 1.03905 1.02127 0.86940 1.21917 1.08467 0.98540 0.92030 1.20279 1.16907 0.95403 0.94499 1.17800 0.75868 0.82553 0.86884 1.90646 1.58247 1.83105 1.16578 1.45444 1.65443 1.12430 1.10087 1.21427 0.95709 0.86735 0.92980 0.92315 1.20861 0.87696 0.98976 0.87884 1.44151 1.41367 1.19695 1.27055 1.19416 1.16493 1.09965 0.91799 0.91414 1.25661 1.00249 1.02911 0.95684 1.70176 1.49710 1.37834 1.00307 0.85464 0.77393 0.80998 0.77911 1.22805 1.22220 1.18418 1.21144 0.95645 0.88106 0.93966 1.21949 0.94772 1.02246 0.96414 1.21265 0.97066 0.94835 0.97432 0.90525 1.21740 0.93651 1.02340 1.01308 1.20367 1.01415 0.91076 0.90224 1.20434 1.02373 1.02438 0.88920 0.91838 0.93114 0.88208 0.88634 0.86861 0.89423 0.90179 0.89546 0.83292 0.76166 0.93548 0.98669 0.94710 0.92456 0.96759 0.88939 0.92273 0.92847 0.93328 0.90366 0.91745 0.88864 0.90686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 10.24 71.98 0.74 -1.10 16 2 C 0.08 1.24 6.08 86.38 0.53 1.77 16 3 N -0.43 -10.67 2.69 -495.47 -1.33 -12.00 16 4 C 0.02 0.40 6.85 40.98 0.28 0.68 16 5 C -0.08 -1.11 10.06 71.24 0.72 -0.40 16 6 C -0.19 -5.72 10.45 23.62 0.25 -5.47 16 7 C -0.26 -9.92 6.29 -19.04 -0.12 -10.04 16 8 C 0.58 25.85 7.78 86.62 0.67 26.52 16 9 O -0.60 -30.98 14.48 -4.12 -0.06 -31.04 16 10 N -0.68 -27.73 4.25 -445.59 -1.89 -29.62 16 11 C 0.14 5.81 2.24 45.07 0.10 5.91 16 12 H 0.06 2.63 7.58 -2.38 -0.02 2.61 16 13 C 0.17 9.17 4.91 86.36 0.42 9.60 16 14 N -0.60 -30.85 2.91 -699.09 -2.04 -32.89 16 15 C -0.25 -14.05 9.59 84.04 0.81 -13.25 16 16 H 0.07 3.73 7.89 -2.91 -0.02 3.71 16 17 C -0.05 -2.99 4.91 84.86 0.42 -2.57 16 18 N -0.93 -59.99 11.19 21.65 0.24 -59.75 16 19 Si 0.95 48.67 29.59 68.60 2.03 50.70 16 20 H -0.30 -15.75 7.11 99.48 0.71 -15.04 16 21 H -0.30 -15.10 7.11 99.48 0.71 -14.39 16 22 H -0.26 -12.26 7.11 99.48 0.71 -11.55 16 23 C 0.14 5.53 6.52 86.36 0.56 6.09 16 24 C -0.11 -3.54 5.20 30.67 0.16 -3.38 16 25 C -0.09 -2.79 2.48 -10.77 -0.03 -2.81 16 26 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 27 C -0.13 -3.35 9.05 71.98 0.65 -2.70 16 28 C 0.09 2.84 6.89 41.78 0.29 3.13 16 29 C -0.08 -2.54 9.26 71.24 0.66 -1.88 16 30 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.05 0.73 8.10 -2.39 -0.02 0.71 16 32 H 0.10 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.10 1.32 7.51 -2.39 -0.02 1.30 16 34 H 0.11 1.16 6.90 -2.39 -0.02 1.15 16 35 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 36 H 0.08 0.87 6.94 -2.39 -0.02 0.86 16 37 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.15 4.09 7.70 -2.91 -0.02 4.07 16 39 H 0.40 14.56 5.76 -92.71 -0.53 14.03 16 40 H 0.05 2.94 6.04 -2.38 -0.01 2.93 16 41 H 0.00 -0.26 8.14 -2.39 -0.02 -0.28 16 42 H 0.24 15.42 8.31 -92.71 -0.77 14.64 16 43 H 0.06 2.24 7.93 -2.39 -0.02 2.23 16 44 H 0.01 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 46 H 0.06 1.80 6.40 -2.38 -0.02 1.78 16 47 H 0.05 1.35 7.55 -2.38 -0.02 1.33 16 48 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.09 2.00 7.56 -2.39 -0.02 1.98 16 52 H 0.07 2.68 6.47 -2.39 -0.02 2.66 16 Total: -1.00 -80.77 403.39 4.42 -76.34 By element: Atomic # 1 Polarization: 27.81 SS G_CDS: 0.37 Total: 28.18 kcal Atomic # 6 Polarization: 2.99 SS G_CDS: 7.10 Total: 10.09 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -5.02 Total: -134.26 kcal Atomic # 8 Polarization: -30.98 SS G_CDS: -0.06 Total: -31.04 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.70 kcal Total: -80.77 4.42 -76.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272773.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.397 kcal (2) G-P(sol) polarization free energy of solvation -80.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.368 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.423 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.342 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds