Wall clock time and date at job start Tue Mar 31 2020 18:07:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46497 * 109.47067 * 2 1 4 4 C 1.36442 * 124.85850 * 269.97791 * 3 2 1 5 5 C 1.50705 * 125.56736 * 0.03951 * 4 3 2 6 6 C 1.34484 * 108.86154 * 180.02562 * 4 3 2 7 7 C 1.46688 * 106.33311 * 359.77912 * 6 4 3 8 8 C 1.47252 * 126.94357 * 180.23473 * 7 6 4 9 9 O 1.21629 * 119.99996 * 180.14864 * 8 7 6 10 10 N 1.34777 * 120.00052 * 0.15120 * 8 7 6 11 11 C 1.46508 * 119.99990 * 179.97438 * 10 8 7 12 12 H 1.08996 * 109.49273 * 325.06121 * 11 10 8 13 13 C 1.53190 * 109.49742 * 85.16202 * 11 10 8 14 14 N 1.46927 * 108.77665 * 65.31616 * 13 11 10 15 15 C 1.36937 * 120.63163 * 233.62881 * 14 13 11 16 16 H 1.07995 * 119.99736 * 151.79929 * 15 14 13 17 17 C 1.38807 * 119.99839 * 331.80897 * 15 14 13 18 18 N 1.31618 * 120.00149 * 343.09034 * 17 15 14 19 19 Si 1.86802 * 119.99936 * 163.09093 * 17 15 14 20 20 H 1.48498 * 109.47454 * 59.99649 * 19 17 15 21 21 H 1.48503 * 109.46883 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.46858 * 299.99617 * 19 17 15 23 23 C 1.46926 * 118.73694 * 53.60770 * 14 13 11 24 24 C 1.53193 * 108.77582 * 306.38867 * 23 14 13 25 25 C 1.53039 * 109.31275 * 54.64024 * 24 23 14 26 26 H 1.08996 * 109.46171 * 58.64897 * 25 24 23 27 27 C 1.52998 * 109.46433 * 178.61208 * 25 24 23 28 28 C 1.34665 * 124.84931 * 90.00057 * 3 2 1 29 29 C 1.50700 * 125.80093 * 359.95964 * 28 3 2 30 30 H 1.09000 * 109.47128 * 59.99728 * 1 2 3 31 31 H 1.08996 * 109.46750 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.46705 * 300.00085 * 1 2 3 33 33 H 1.09001 * 109.47002 * 240.00601 * 2 1 3 34 34 H 1.09000 * 109.47128 * 120.00272 * 2 1 3 35 35 H 1.09008 * 109.46865 * 89.99973 * 5 4 3 36 36 H 1.08998 * 109.47435 * 210.00187 * 5 4 3 37 37 H 1.09002 * 109.47239 * 330.00463 * 5 4 3 38 38 H 1.08003 * 126.82958 * 179.97438 * 6 4 3 39 39 H 0.97004 * 120.00124 * 0.02562 * 10 8 7 40 40 H 1.09003 * 109.58161 * 185.10190 * 13 11 10 41 41 H 1.08996 * 109.58659 * 305.52582 * 13 11 10 42 42 H 0.96996 * 120.00297 * 180.02562 * 18 17 15 43 43 H 1.09000 * 109.58678 * 186.60679 * 23 14 13 44 44 H 1.08993 * 109.70722 * 66.24768 * 23 14 13 45 45 H 1.08997 * 109.49893 * 294.68237 * 24 23 14 46 46 H 1.09002 * 109.49457 * 174.58591 * 24 23 14 47 47 H 1.08997 * 109.47115 * 180.02562 * 27 25 24 48 48 H 1.09003 * 109.46724 * 300.07076 * 27 25 24 49 49 H 1.09002 * 109.46822 * 60.06304 * 27 25 24 50 50 H 1.08994 * 109.47360 * 89.99833 * 29 28 3 51 51 H 1.09003 * 109.47286 * 209.99934 * 29 28 3 52 52 H 1.09003 * 109.46913 * 329.99781 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2787 2.1163 -1.1196 5 6 2.1101 1.6404 -2.5396 6 6 2.7100 3.3350 -0.7490 7 6 2.7076 3.3450 0.7179 8 6 3.0955 4.4616 1.5960 9 8 3.0474 4.3301 2.8042 10 7 3.5037 5.6293 1.0608 11 6 3.8891 6.7404 1.9345 12 1 3.2624 6.7361 2.8263 13 6 5.3582 6.5861 2.3402 14 7 6.1968 6.7237 1.1416 15 6 7.1097 5.7570 0.8140 16 1 7.3837 5.6009 -0.2189 17 6 7.6827 4.9777 1.8095 18 7 7.6200 5.3644 3.0660 19 14 8.5428 3.3799 1.3659 20 1 9.6686 3.6641 0.4402 21 1 9.0653 2.7399 2.5999 22 1 7.5775 2.4650 0.7051 23 6 6.0369 7.9180 0.3010 24 6 4.5602 8.0574 -0.0820 25 6 3.7064 8.0640 1.1881 26 1 4.0166 8.8885 1.8300 27 6 2.2337 8.2378 0.8116 28 6 2.2749 2.1067 1.1051 29 6 2.1076 1.6362 2.5270 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3632 0.5138 0.8900 33 1 1.8934 -0.5137 -0.8900 34 1 1.8934 -0.5139 0.8900 35 1 1.1007 1.8687 -2.8819 36 1 2.8338 2.1444 -3.1801 37 1 2.2738 0.5636 -2.5837 38 1 2.9976 4.1461 -1.4016 39 1 3.5417 5.7343 0.0972 40 1 5.6214 7.3601 3.0612 41 1 5.5134 5.6026 2.7838 42 1 8.0207 4.8201 3.7617 43 1 6.6399 7.8134 -0.6010 44 1 6.3561 8.8017 0.8534 45 1 4.2672 7.2184 -0.7130 46 1 4.4117 8.9908 -0.6249 47 1 1.6256 8.2430 1.7161 48 1 2.1035 9.1805 0.2800 49 1 1.9229 7.4131 0.1702 50 1 3.0359 1.1797 2.8702 51 1 1.8632 2.4859 3.1645 52 1 1.3027 0.9028 2.5747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000967272776.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:50 Heat of formation + Delta-G solvation = 17.236188 kcal Electronic energy + Delta-G solvation = -30854.328015 eV Core-core repulsion = 27047.599366 eV Total energy + Delta-G solvation = -3806.728649 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30768 -39.12085 -37.16841 -34.12029 -33.97274 -32.69322 -32.35435 -30.90469 -29.71139 -29.12357 -28.53524 -27.17032 -24.79949 -23.94575 -23.65509 -22.20867 -21.41032 -20.95441 -19.83184 -18.59892 -18.28774 -16.84220 -16.44169 -15.78399 -15.31243 -14.88067 -14.73844 -14.66750 -13.89317 -13.77823 -13.62440 -13.48553 -13.36748 -13.22766 -13.16705 -12.97113 -12.94946 -12.63240 -12.50319 -12.35244 -12.25857 -12.04690 -11.79263 -11.56920 -11.49643 -11.45521 -11.25874 -11.13487 -10.92420 -10.80339 -10.61948 -10.39415 -10.13210 -9.80466 -9.55335 -9.35839 -9.01729 -8.38657 -8.33029 -8.07069 -7.69517 -6.51127 -5.64782 -3.07337 2.15831 2.62764 2.86899 3.45923 3.52145 3.54080 4.12538 4.32221 4.47426 4.60997 4.70304 4.76184 4.92760 5.01908 5.21342 5.30571 5.31254 5.33333 5.37283 5.42052 5.47056 5.47708 5.54678 5.66215 5.69078 5.73784 5.81477 5.85019 5.91793 6.01244 6.05790 6.12569 6.13740 6.24320 6.26411 6.42661 6.49155 6.50647 6.57833 6.70913 6.82623 6.87417 7.01386 7.07919 7.21067 7.32041 7.44890 7.60520 7.82221 7.93505 8.48012 8.59662 9.18867 9.34153 9.98617 10.54383 11.43031 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010117 B = 0.004741 C = 0.003933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2766.887617 B = 5904.266849 C = 7117.799740 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.002 3.998 5 C -0.079 4.079 6 C -0.160 4.160 7 C -0.217 4.217 8 C 0.590 3.410 9 O -0.560 6.560 10 N -0.694 5.694 11 C 0.128 3.872 12 H 0.074 0.926 13 C 0.162 3.838 14 N -0.586 5.586 15 C -0.250 4.250 16 H 0.061 0.939 17 C 0.009 3.991 18 N -0.898 5.898 19 Si 0.896 3.104 20 H -0.284 1.284 21 H -0.291 1.291 22 H -0.285 1.285 23 C 0.143 3.857 24 C -0.128 4.128 25 C -0.094 4.094 26 H 0.075 0.925 27 C -0.143 4.143 28 C 0.097 3.903 29 C -0.090 4.090 30 H 0.062 0.938 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.067 0.933 36 H 0.079 0.921 37 H 0.059 0.941 38 H 0.141 0.859 39 H 0.393 0.607 40 H 0.022 0.978 41 H 0.097 0.903 42 H 0.253 0.747 43 H 0.052 0.948 44 H 0.016 0.984 45 H 0.054 0.946 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.051 0.949 50 H 0.074 0.926 51 H 0.102 0.898 52 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.900 -6.429 -9.011 19.374 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.027 4.027 3 N -0.119 5.119 4 C -0.105 4.105 5 C -0.137 4.137 6 C -0.184 4.184 7 C -0.227 4.227 8 C 0.378 3.622 9 O -0.441 6.441 10 N -0.343 5.343 11 C 0.022 3.978 12 H 0.092 0.908 13 C 0.035 3.965 14 N -0.308 5.308 15 C -0.380 4.380 16 H 0.079 0.921 17 C -0.190 4.190 18 N -0.542 5.542 19 Si 0.726 3.274 20 H -0.211 1.211 21 H -0.217 1.217 22 H -0.211 1.211 23 C 0.017 3.983 24 C -0.168 4.168 25 C -0.113 4.113 26 H 0.093 0.907 27 C -0.201 4.201 28 C -0.018 4.018 29 C -0.148 4.148 30 H 0.081 0.919 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.078 0.922 38 H 0.159 0.841 39 H 0.228 0.772 40 H 0.040 0.960 41 H 0.115 0.885 42 H 0.063 0.937 43 H 0.070 0.930 44 H 0.034 0.966 45 H 0.073 0.927 46 H 0.070 0.930 47 H 0.068 0.932 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.092 0.908 51 H 0.120 0.880 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.942 -6.911 -8.031 19.142 hybrid contribution 0.643 -0.848 -0.742 1.298 sum -15.299 -7.759 -8.774 19.268 Atomic orbital electron populations 1.22156 0.94444 1.02721 1.03277 1.21799 0.95441 0.81159 1.04257 1.43524 1.51653 1.11548 1.05127 1.20071 1.09178 0.92800 0.88439 1.20274 1.02445 1.00896 0.90044 1.21751 1.06529 0.96748 0.93417 1.20242 1.14330 0.95007 0.93121 1.17192 0.76416 0.81668 0.86894 1.90683 1.56302 1.82449 1.14688 1.45558 1.66185 1.12652 1.09877 1.21718 0.99704 0.84079 0.92319 0.90847 1.21193 0.84385 1.02769 0.88166 1.43942 1.41374 1.18629 1.26903 1.19006 1.17004 1.10313 0.91634 0.92112 1.24957 0.98488 0.99919 0.95672 1.69988 1.47536 1.37291 0.99420 0.86475 0.79287 0.84597 0.77057 1.21077 1.21738 1.21127 1.20910 0.92402 0.90252 0.94769 1.22076 0.98356 0.99991 0.96362 1.21304 0.94569 0.97607 0.97794 0.90661 1.21839 0.96483 1.00767 1.00979 1.20208 1.01728 0.91017 0.88895 1.20526 1.01620 1.02714 0.89896 0.91874 0.90919 0.91748 0.89328 0.89270 0.91470 0.90212 0.92184 0.84139 0.77195 0.96000 0.88517 0.93690 0.92976 0.96568 0.92713 0.92967 0.93198 0.93347 0.92960 0.90763 0.87976 0.92573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.24 37.16 0.38 -0.86 16 2 C 0.10 0.86 6.09 -4.04 -0.02 0.83 16 3 N -0.44 -5.84 2.69 -107.96 -0.29 -6.13 16 4 C 0.00 0.03 6.85 -81.87 -0.56 -0.53 16 5 C -0.08 -0.74 10.06 36.01 0.36 -0.37 16 6 C -0.16 -2.53 10.45 -37.50 -0.39 -2.92 16 7 C -0.22 -4.02 6.29 -103.36 -0.65 -4.67 16 8 C 0.59 12.47 7.78 -12.60 -0.10 12.37 16 9 O -0.56 -13.33 14.47 5.25 0.08 -13.25 16 10 N -0.69 -13.62 4.25 -54.81 -0.23 -13.85 16 11 C 0.13 2.59 2.24 -67.80 -0.15 2.44 16 12 H 0.07 1.54 7.58 -51.93 -0.39 1.15 16 13 C 0.16 4.04 4.91 -3.71 -0.02 4.03 16 14 N -0.59 -14.74 2.91 -172.33 -0.50 -15.24 16 15 C -0.25 -7.00 9.58 -15.06 -0.14 -7.14 16 16 H 0.06 1.68 7.88 -52.49 -0.41 1.26 16 17 C 0.01 0.25 4.92 -17.43 -0.09 0.16 16 18 N -0.90 -27.34 11.20 55.49 0.62 -26.72 16 19 Si 0.90 22.97 29.59 -169.99 -5.03 17.94 16 20 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 21 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 22 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 23 C 0.14 2.97 6.52 -3.71 -0.02 2.95 16 24 C -0.13 -2.14 5.20 -26.61 -0.14 -2.28 16 25 C -0.09 -1.56 2.48 -90.58 -0.22 -1.78 16 26 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 27 C -0.14 -1.99 9.05 37.16 0.34 -1.66 16 28 C 0.10 1.58 6.89 -81.88 -0.56 1.01 16 29 C -0.09 -1.31 9.27 36.01 0.33 -0.98 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.65 6.90 -51.93 -0.36 0.30 16 34 H 0.09 0.74 7.49 -51.93 -0.39 0.35 16 35 H 0.07 0.53 8.14 -51.92 -0.42 0.11 16 36 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.06 0.48 6.94 -51.93 -0.36 0.12 16 38 H 0.14 2.01 7.70 -52.48 -0.40 1.60 16 39 H 0.39 7.14 5.76 -40.82 -0.24 6.90 16 40 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 2.86 6.06 -51.93 -0.31 2.54 16 42 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 43 H 0.05 1.06 7.93 -51.93 -0.41 0.65 16 44 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 45 H 0.05 0.91 6.40 -51.93 -0.33 0.58 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 49 H 0.05 0.73 7.54 -51.93 -0.39 0.33 16 50 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 51 H 0.10 1.69 6.45 -51.93 -0.33 1.36 16 52 H 0.06 0.62 7.58 -51.93 -0.39 0.23 16 LS Contribution 403.44 15.07 6.08 6.08 Total: -1.00 -34.05 403.44 -9.88 -43.93 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -8.94 Total: 6.65 kcal Atomic # 6 Polarization: 2.26 SS G_CDS: -1.66 Total: 0.59 kcal Atomic # 7 Polarization: -61.53 SS G_CDS: -0.40 Total: -61.94 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: 0.08 Total: -13.25 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.03 Total: 17.94 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -34.05 -9.88 -43.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000967272776.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.166 kcal (2) G-P(sol) polarization free energy of solvation -34.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.930 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds