Wall clock time and date at job start Tue Mar 31 2020 18:07:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36449 * 124.84755 * 90.02154 * 3 2 1 5 5 C 1.50701 * 125.57375 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85460 * 180.02562 * 4 3 2 7 7 C 1.46692 * 106.33025 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.93630 * 179.97438 * 7 6 4 9 9 O 1.21630 * 119.99460 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00538 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00029 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88697 * 325.70141 * 11 10 8 13 13 C 1.54906 * 111.00181 * 89.58719 * 11 10 8 14 14 N 1.47526 * 104.78593 * 81.08635 * 13 11 10 15 15 C 1.36932 * 125.63898 * 204.08334 * 14 13 11 16 16 H 1.08001 * 120.00462 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99746 * 0.03808 * 15 14 13 18 18 N 1.31615 * 120.00300 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99825 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46762 * 60.00702 * 19 17 15 21 21 H 1.48499 * 109.47011 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47031 * 300.00618 * 19 17 15 23 23 C 1.47020 * 108.71326 * 24.11957 * 14 13 11 24 24 C 1.54327 * 107.27352 * 358.94183 * 23 14 13 25 25 C 1.52999 * 110.72069 * 219.44649 * 24 23 14 26 26 C 1.53001 * 110.71891 * 96.17157 * 24 23 14 27 27 C 1.34649 * 124.85030 * 269.72179 * 3 2 1 28 28 C 1.50697 * 125.80154 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09003 * 109.47115 * 89.99293 * 5 4 3 35 35 H 1.08996 * 109.46993 * 209.99211 * 5 4 3 36 36 H 1.09003 * 109.46943 * 329.99916 * 5 4 3 37 37 H 1.07998 * 126.83218 * 180.02562 * 6 4 3 38 38 H 0.97006 * 119.99963 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.36468 * 199.89921 * 13 11 10 40 40 H 1.09001 * 110.36737 * 322.22363 * 13 11 10 41 41 H 0.96994 * 120.00172 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.88139 * 239.52471 * 23 14 13 43 43 H 1.09001 * 110.01118 * 118.43312 * 23 14 13 44 44 H 1.09003 * 109.47095 * 173.52185 * 25 24 23 45 45 H 1.09004 * 109.47227 * 293.51745 * 25 24 23 46 46 H 1.09001 * 109.47404 * 53.51827 * 25 24 23 47 47 H 1.08994 * 109.46852 * 306.47943 * 26 24 23 48 48 H 1.09005 * 109.46962 * 66.47983 * 26 24 23 49 49 H 1.08994 * 109.46824 * 186.48131 * 26 24 23 50 50 H 1.08999 * 109.47204 * 89.99897 * 28 27 3 51 51 H 1.09008 * 109.47271 * 209.99678 * 28 27 3 52 52 H 1.09000 * 109.47287 * 329.99564 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2786 2.1162 1.1198 5 6 2.1103 1.6401 2.5397 6 6 2.7089 3.3353 0.7493 7 6 2.7103 3.3439 -0.7176 8 6 3.1028 4.4592 -1.5956 9 8 3.0555 4.3275 -2.8038 10 7 3.5144 5.6256 -1.0605 11 6 3.9053 6.7348 -1.9340 12 1 4.3831 6.3651 -2.8413 13 6 2.6876 7.6303 -2.2730 14 7 2.5320 8.5134 -1.1016 15 6 1.3730 9.1339 -0.7186 16 1 1.3621 9.7640 0.1585 17 6 0.2119 8.9529 -1.4575 18 7 0.2248 8.1844 -2.5259 19 14 -1.3695 9.7988 -0.9345 20 1 -1.1681 11.2701 -0.9376 21 1 -2.4566 9.4456 -1.8824 22 1 -1.7407 9.3528 0.4324 23 6 3.8273 8.6177 -0.4141 24 6 4.8285 7.7328 -1.1863 25 6 5.7549 6.9929 -0.2192 26 6 5.6372 8.5702 -2.1791 27 6 2.2799 2.1049 -1.1050 28 6 2.1195 1.6321 -2.5268 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0384 1.1822 2.8818 35 1 1.8653 2.4872 3.1803 36 1 1.3054 0.9063 2.5838 37 1 2.9962 4.1464 1.4018 38 1 3.5524 5.7305 -0.0968 39 1 2.8873 8.2192 -3.1682 40 1 1.7947 7.0204 -2.4105 41 1 -0.5866 8.0576 -3.0420 42 1 3.7323 8.2615 0.6117 43 1 4.1688 9.6528 -0.4167 44 1 6.3743 6.2896 -0.7759 45 1 6.3933 7.7119 0.2942 46 1 5.1571 6.4500 0.5130 47 1 4.9570 9.1318 -2.8194 48 1 6.2775 9.2630 -1.6331 49 1 6.2532 7.9123 -2.7921 50 1 1.1120 1.8610 -2.8744 51 1 2.8466 2.1378 -3.1622 52 1 2.2837 0.5555 -2.5725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000974795645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:31 Heat of formation + Delta-G solvation = 26.272861 kcal Electronic energy + Delta-G solvation = -30396.663494 eV Core-core repulsion = 26590.326705 eV Total energy + Delta-G solvation = -3806.336790 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.36832 -39.25863 -37.46130 -34.14867 -33.66901 -32.84839 -32.45905 -30.59239 -29.51288 -29.07879 -27.88689 -26.69991 -25.51007 -24.75288 -23.83817 -23.04740 -21.53012 -20.23525 -19.38048 -18.92247 -18.03133 -16.78833 -16.55545 -15.86256 -15.39234 -15.27428 -14.78670 -14.46199 -13.96772 -13.78352 -13.66357 -13.45190 -13.43595 -13.20043 -13.11587 -13.05675 -12.88207 -12.58833 -12.38962 -12.31359 -12.06912 -12.03490 -11.80874 -11.61498 -11.59107 -11.48083 -11.23132 -11.16330 -11.05320 -10.87989 -10.68451 -10.27921 -10.12090 -9.80771 -9.66806 -9.57336 -9.12675 -8.56570 -8.44760 -8.09643 -7.75138 -6.69273 -5.52071 -2.94950 2.08947 2.55816 2.81826 3.46203 3.50007 3.52092 4.03243 4.20459 4.44111 4.57398 4.67604 4.74858 4.91004 4.93253 5.12739 5.15165 5.32104 5.34742 5.36572 5.37610 5.42149 5.43621 5.60599 5.62850 5.72045 5.75861 5.76731 5.84074 5.86561 5.94266 6.00085 6.07465 6.14959 6.17310 6.22888 6.31000 6.40169 6.44558 6.57513 6.59652 6.75499 6.81935 6.94690 7.01254 7.21048 7.26744 7.39168 7.65886 7.73084 8.02831 8.38611 8.52328 9.09018 9.32756 9.94656 10.59585 11.50171 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.004047 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.901647 B = 6916.483853 C = 8178.405272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.440 5.440 4 C 0.004 3.996 5 C -0.081 4.081 6 C -0.161 4.161 7 C -0.221 4.221 8 C 0.591 3.409 9 O -0.557 6.557 10 N -0.697 5.697 11 C 0.127 3.873 12 H 0.084 0.916 13 C 0.147 3.853 14 N -0.600 5.600 15 C -0.224 4.224 16 H 0.075 0.925 17 C -0.008 4.008 18 N -0.916 5.916 19 Si 0.910 3.090 20 H -0.286 1.286 21 H -0.291 1.291 22 H -0.287 1.287 23 C 0.144 3.856 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.128 4.128 27 C 0.099 3.901 28 C -0.090 4.090 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.089 0.911 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.060 0.940 37 H 0.142 0.858 38 H 0.395 0.605 39 H 0.018 0.982 40 H 0.113 0.887 41 H 0.252 0.748 42 H 0.020 0.980 43 H 0.022 0.978 44 H 0.052 0.948 45 H 0.052 0.948 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.075 0.925 51 H 0.101 0.899 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -16.809 7.385 19.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.025 4.025 3 N -0.119 5.119 4 C -0.103 4.103 5 C -0.138 4.138 6 C -0.186 4.186 7 C -0.230 4.230 8 C 0.379 3.621 9 O -0.438 6.438 10 N -0.346 5.346 11 C 0.022 3.978 12 H 0.102 0.898 13 C 0.021 3.979 14 N -0.326 5.326 15 C -0.353 4.353 16 H 0.093 0.907 17 C -0.204 4.204 18 N -0.564 5.564 19 Si 0.741 3.259 20 H -0.213 1.213 21 H -0.217 1.217 22 H -0.213 1.213 23 C 0.018 3.982 24 C -0.089 4.089 25 C -0.187 4.187 26 C -0.185 4.185 27 C -0.016 4.016 28 C -0.147 4.147 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.079 0.921 37 H 0.159 0.841 38 H 0.229 0.771 39 H 0.036 0.964 40 H 0.131 0.869 41 H 0.062 0.938 42 H 0.038 0.962 43 H 0.039 0.961 44 H 0.071 0.929 45 H 0.071 0.929 46 H 0.071 0.929 47 H 0.082 0.918 48 H 0.072 0.928 49 H 0.069 0.931 50 H 0.094 0.906 51 H 0.120 0.880 52 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 6.951 -17.189 6.484 19.642 hybrid contribution -0.957 0.662 0.862 1.448 sum 5.994 -16.527 7.346 19.053 Atomic orbital electron populations 1.22168 0.94313 1.02768 1.03600 1.21802 0.95644 0.80997 1.04090 1.43556 1.51412 1.11757 1.05128 1.20083 1.08981 0.92818 0.88453 1.20287 1.01677 1.01869 0.89994 1.21778 1.06910 0.96472 0.93395 1.20216 1.14942 0.94770 0.93101 1.17213 0.76370 0.81577 0.86941 1.90692 1.55509 1.82937 1.14647 1.45530 1.66836 1.12292 1.09936 1.22440 0.97109 0.86036 0.92252 0.89768 1.22321 0.96251 0.91175 0.88129 1.44462 1.04265 1.55252 1.28646 1.18969 0.85807 1.22189 1.08318 0.90745 1.24769 0.97844 1.00272 0.97514 1.69809 1.26868 1.41363 1.18335 0.86224 0.83289 0.78938 0.77441 1.21314 1.21679 1.21328 1.21385 0.86480 0.96047 0.94270 1.21838 0.94939 0.95927 0.96211 1.21701 0.98741 0.99594 0.98661 1.21679 0.99196 0.99103 0.98552 1.20205 1.01290 0.91182 0.88942 1.20524 1.04453 0.99898 0.89804 0.91779 0.91563 0.90874 0.89250 0.89394 0.91421 0.90143 0.92082 0.84072 0.77067 0.96443 0.86939 0.93752 0.96231 0.96058 0.92879 0.92937 0.92894 0.91803 0.92847 0.93123 0.90645 0.88045 0.92556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.10 0.79 6.10 -4.04 -0.02 0.77 16 3 N -0.44 -5.47 2.69 -107.96 -0.29 -5.76 16 4 C 0.00 0.05 6.85 -81.86 -0.56 -0.51 16 5 C -0.08 -0.71 9.81 36.01 0.35 -0.35 16 6 C -0.16 -2.43 10.45 -37.50 -0.39 -2.82 16 7 C -0.22 -3.89 6.29 -103.35 -0.65 -4.54 16 8 C 0.59 12.10 7.81 -12.60 -0.10 12.00 16 9 O -0.56 -12.83 14.51 5.25 0.08 -12.75 16 10 N -0.70 -13.61 4.62 -52.85 -0.24 -13.85 16 11 C 0.13 2.62 2.61 -65.78 -0.17 2.45 16 12 H 0.08 1.77 7.53 -51.93 -0.39 1.38 16 13 C 0.15 3.77 5.28 -2.47 -0.01 3.76 16 14 N -0.60 -15.57 3.40 -169.99 -0.58 -16.14 16 15 C -0.22 -6.38 10.27 -15.06 -0.15 -6.54 16 16 H 0.07 2.04 7.83 -52.49 -0.41 1.63 16 17 C -0.01 -0.23 5.49 -17.43 -0.10 -0.33 16 18 N -0.92 -27.95 10.09 55.49 0.56 -27.39 16 19 Si 0.91 22.78 29.55 -169.99 -5.02 17.76 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 22 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 23 C 0.14 3.02 6.41 -3.06 -0.02 3.00 16 24 C -0.09 -1.55 0.80 -152.67 -0.12 -1.67 16 25 C -0.13 -1.85 8.07 37.16 0.30 -1.55 16 26 C -0.13 -2.04 8.41 37.16 0.31 -1.73 16 27 C 0.10 1.52 6.89 -81.89 -0.56 0.96 16 28 C -0.09 -1.21 9.51 36.00 0.34 -0.87 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.63 6.87 -51.93 -0.36 0.27 16 33 H 0.09 0.56 7.52 -51.93 -0.39 0.17 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.06 0.45 7.60 -51.93 -0.39 0.06 16 37 H 0.14 1.93 7.70 -52.49 -0.40 1.53 16 38 H 0.39 7.12 6.15 -40.82 -0.25 6.87 16 39 H 0.02 0.48 7.80 -51.93 -0.41 0.08 16 40 H 0.11 3.37 5.88 -51.93 -0.31 3.07 16 41 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 42 H 0.02 0.40 7.76 -51.93 -0.40 0.00 16 43 H 0.02 0.45 7.84 -51.93 -0.41 0.04 16 44 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 46 H 0.05 0.74 6.42 -51.93 -0.33 0.41 16 47 H 0.06 1.15 7.57 -51.93 -0.39 0.75 16 48 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 50 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 51 H 0.10 1.58 6.49 -51.92 -0.34 1.24 16 52 H 0.06 0.57 6.92 -51.93 -0.36 0.21 16 LS Contribution 405.05 15.07 6.10 6.10 Total: -1.00 -34.44 405.05 -9.48 -43.92 By element: Atomic # 1 Polarization: 15.96 SS G_CDS: -8.90 Total: 7.05 kcal Atomic # 6 Polarization: 2.25 SS G_CDS: -1.18 Total: 1.07 kcal Atomic # 7 Polarization: -62.60 SS G_CDS: -0.55 Total: -63.15 kcal Atomic # 8 Polarization: -12.83 SS G_CDS: 0.08 Total: -12.75 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -5.02 Total: 17.76 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.44 -9.48 -43.92 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974795645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.191 kcal (2) G-P(sol) polarization free energy of solvation -34.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds