Wall clock time and date at job start Tue Mar 31 2020 18:07:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46505 * 109.47212 * 2 1 4 4 C 1.36449 * 124.84755 * 90.02154 * 3 2 1 5 5 C 1.50701 * 125.57375 * 359.97438 * 4 3 2 6 6 C 1.34486 * 108.85460 * 180.02562 * 4 3 2 7 7 C 1.46692 * 106.33025 * 0.02562 * 6 4 3 8 8 C 1.47262 * 126.93630 * 179.97438 * 7 6 4 9 9 O 1.21630 * 119.99460 * 179.97438 * 8 7 6 10 10 N 1.34771 * 120.00538 * 359.97438 * 8 7 6 11 11 C 1.46502 * 120.00029 * 179.97438 * 10 8 7 12 12 H 1.09001 * 110.88697 * 325.70141 * 11 10 8 13 13 C 1.54906 * 111.00181 * 89.58719 * 11 10 8 14 14 N 1.47526 * 104.78593 * 81.08635 * 13 11 10 15 15 C 1.36932 * 125.63898 * 204.08334 * 14 13 11 16 16 H 1.08001 * 120.00462 * 180.02562 * 15 14 13 17 17 C 1.38814 * 119.99746 * 0.03808 * 15 14 13 18 18 N 1.31615 * 120.00300 * 0.02562 * 17 15 14 19 19 Si 1.86809 * 119.99825 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46762 * 60.00702 * 19 17 15 21 21 H 1.48499 * 109.47011 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47031 * 300.00618 * 19 17 15 23 23 C 1.47020 * 108.71326 * 24.11957 * 14 13 11 24 24 C 1.54327 * 107.27352 * 358.94183 * 23 14 13 25 25 C 1.52999 * 110.72069 * 219.44649 * 24 23 14 26 26 C 1.53001 * 110.71891 * 96.17157 * 24 23 14 27 27 C 1.34649 * 124.85030 * 269.72179 * 3 2 1 28 28 C 1.50697 * 125.80154 * 0.02562 * 27 3 2 29 29 H 1.09002 * 109.47153 * 300.00008 * 1 2 3 30 30 H 1.08998 * 109.47533 * 59.99637 * 1 2 3 31 31 H 1.08996 * 109.47853 * 179.97438 * 1 2 3 32 32 H 1.09002 * 109.47153 * 239.99992 * 2 1 3 33 33 H 1.09001 * 109.46832 * 120.00183 * 2 1 3 34 34 H 1.09003 * 109.47115 * 89.99293 * 5 4 3 35 35 H 1.08996 * 109.46993 * 209.99211 * 5 4 3 36 36 H 1.09003 * 109.46943 * 329.99916 * 5 4 3 37 37 H 1.07998 * 126.83218 * 180.02562 * 6 4 3 38 38 H 0.97006 * 119.99963 * 0.02562 * 10 8 7 39 39 H 1.09001 * 110.36468 * 199.89921 * 13 11 10 40 40 H 1.09001 * 110.36737 * 322.22363 * 13 11 10 41 41 H 0.96994 * 120.00172 * 179.97438 * 18 17 15 42 42 H 1.09001 * 109.88139 * 239.52471 * 23 14 13 43 43 H 1.09001 * 110.01118 * 118.43312 * 23 14 13 44 44 H 1.09003 * 109.47095 * 173.52185 * 25 24 23 45 45 H 1.09004 * 109.47227 * 293.51745 * 25 24 23 46 46 H 1.09001 * 109.47404 * 53.51827 * 25 24 23 47 47 H 1.08994 * 109.46852 * 306.47943 * 26 24 23 48 48 H 1.09005 * 109.46962 * 66.47983 * 26 24 23 49 49 H 1.08994 * 109.46824 * 186.48131 * 26 24 23 50 50 H 1.08999 * 109.47204 * 89.99897 * 28 27 3 51 51 H 1.09008 * 109.47271 * 209.99678 * 28 27 3 52 52 H 1.09000 * 109.47287 * 329.99564 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2786 2.1162 1.1198 5 6 2.1103 1.6401 2.5397 6 6 2.7089 3.3353 0.7493 7 6 2.7103 3.3439 -0.7176 8 6 3.1028 4.4592 -1.5956 9 8 3.0555 4.3275 -2.8038 10 7 3.5144 5.6256 -1.0605 11 6 3.9053 6.7348 -1.9340 12 1 4.3831 6.3651 -2.8413 13 6 2.6876 7.6303 -2.2730 14 7 2.5320 8.5134 -1.1016 15 6 1.3730 9.1339 -0.7186 16 1 1.3621 9.7640 0.1585 17 6 0.2119 8.9529 -1.4575 18 7 0.2248 8.1844 -2.5259 19 14 -1.3695 9.7988 -0.9345 20 1 -1.1681 11.2701 -0.9376 21 1 -2.4566 9.4456 -1.8824 22 1 -1.7407 9.3528 0.4324 23 6 3.8273 8.6177 -0.4141 24 6 4.8285 7.7328 -1.1863 25 6 5.7549 6.9929 -0.2192 26 6 5.6372 8.5702 -2.1791 27 6 2.2799 2.1049 -1.1050 28 6 2.1195 1.6321 -2.5268 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3635 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.0384 1.1822 2.8818 35 1 1.8653 2.4872 3.1803 36 1 1.3054 0.9063 2.5838 37 1 2.9962 4.1464 1.4018 38 1 3.5524 5.7305 -0.0968 39 1 2.8873 8.2192 -3.1682 40 1 1.7947 7.0204 -2.4105 41 1 -0.5866 8.0576 -3.0420 42 1 3.7323 8.2615 0.6117 43 1 4.1688 9.6528 -0.4167 44 1 6.3743 6.2896 -0.7759 45 1 6.3933 7.7119 0.2942 46 1 5.1571 6.4500 0.5130 47 1 4.9570 9.1318 -2.8194 48 1 6.2775 9.2630 -1.6331 49 1 6.2532 7.9123 -2.7921 50 1 1.1120 1.8610 -2.8744 51 1 2.8466 2.1378 -3.1622 52 1 2.2837 0.5555 -2.5725 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000974795645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:30 Heat of formation + Delta-G solvation = 5.310500 kcal Electronic energy + Delta-G solvation = -30397.572491 eV Core-core repulsion = 26590.326705 eV Total energy + Delta-G solvation = -3807.245786 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.43749 -40.88441 -39.09440 -35.63415 -35.03026 -34.31842 -33.54680 -32.58876 -30.61042 -30.06258 -29.46100 -28.01907 -27.40306 -26.00649 -25.02993 -24.35444 -22.84455 -21.96069 -20.86039 -20.26709 -19.33100 -18.67812 -17.94054 -17.29741 -16.74761 -16.60005 -16.23958 -15.70865 -15.64039 -15.41224 -15.22454 -14.72520 -14.64829 -14.33548 -14.11206 -14.07490 -13.97739 -13.73538 -13.67291 -13.62501 -13.44852 -13.17355 -13.02003 -12.98649 -12.85869 -12.81586 -12.61537 -12.54514 -12.46682 -12.24005 -12.14363 -12.10570 -11.76256 -11.73583 -11.40429 -11.32721 -10.81202 -10.66419 -9.89154 -9.46743 -8.90436 -8.80608 -7.73162 -5.18791 0.82100 1.42751 1.46798 1.46984 1.53334 1.86670 2.49462 2.53823 2.72397 3.35574 3.60508 3.71659 3.79260 3.80452 3.91928 4.00726 4.10164 4.10665 4.16469 4.30541 4.39037 4.44203 4.50289 4.56293 4.64149 4.68325 4.75684 4.80205 4.83461 4.84210 4.85191 4.89422 4.93060 4.98476 5.05168 5.06478 5.12417 5.14279 5.22026 5.25051 5.31497 5.34038 5.40673 5.49308 5.55398 5.78473 5.86791 5.89724 6.17691 6.33789 6.43095 6.83472 7.10703 7.52061 7.81052 8.45685 9.27083 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010110 B = 0.004047 C = 0.003423 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2768.901647 B = 6916.483853 C = 8178.405272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.433 5.433 4 C 0.018 3.982 5 C -0.079 4.079 6 C -0.188 4.188 7 C -0.264 4.264 8 C 0.581 3.419 9 O -0.596 6.596 10 N -0.691 5.691 11 C 0.138 3.862 12 H 0.076 0.924 13 C 0.157 3.843 14 N -0.617 5.617 15 C -0.235 4.235 16 H 0.084 0.916 17 C -0.069 4.069 18 N -0.949 5.949 19 Si 0.978 3.022 20 H -0.275 1.275 21 H -0.299 1.299 22 H -0.276 1.276 23 C 0.139 3.861 24 C -0.074 4.074 25 C -0.122 4.122 26 C -0.125 4.125 27 C 0.094 3.906 28 C -0.085 4.085 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.102 0.898 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.088 0.912 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.147 0.853 38 H 0.402 0.598 39 H -0.016 1.016 40 H 0.066 0.934 41 H 0.242 0.758 42 H 0.032 0.968 43 H 0.027 0.973 44 H 0.063 0.937 45 H 0.079 0.921 46 H 0.054 0.946 47 H 0.033 0.967 48 H 0.081 0.919 49 H 0.068 0.932 50 H 0.067 0.933 51 H 0.075 0.925 52 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.360 -18.679 10.540 23.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.032 4.032 3 N -0.110 5.110 4 C -0.090 4.090 5 C -0.136 4.136 6 C -0.212 4.212 7 C -0.274 4.274 8 C 0.372 3.628 9 O -0.480 6.480 10 N -0.340 5.340 11 C 0.032 3.968 12 H 0.094 0.906 13 C 0.030 3.970 14 N -0.343 5.343 15 C -0.364 4.364 16 H 0.102 0.898 17 C -0.261 4.261 18 N -0.599 5.599 19 Si 0.806 3.194 20 H -0.201 1.201 21 H -0.225 1.225 22 H -0.202 1.202 23 C 0.015 3.985 24 C -0.075 4.075 25 C -0.179 4.179 26 C -0.183 4.183 27 C -0.024 4.024 28 C -0.142 4.142 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.121 0.879 32 H 0.123 0.877 33 H 0.136 0.864 34 H 0.107 0.893 35 H 0.103 0.897 36 H 0.099 0.901 37 H 0.165 0.835 38 H 0.239 0.761 39 H 0.002 0.998 40 H 0.084 0.916 41 H 0.051 0.949 42 H 0.050 0.950 43 H 0.045 0.955 44 H 0.082 0.918 45 H 0.098 0.902 46 H 0.073 0.927 47 H 0.052 0.948 48 H 0.100 0.900 49 H 0.087 0.913 50 H 0.086 0.914 51 H 0.093 0.907 52 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.010 -19.063 9.703 22.841 hybrid contribution -1.294 1.188 -0.102 1.760 sum 6.716 -17.875 9.602 21.373 Atomic orbital electron populations 1.22155 0.93940 1.04248 1.02171 1.22227 0.95887 0.78716 1.06408 1.43873 1.49935 1.13075 1.04095 1.20698 1.06196 0.91921 0.90223 1.20431 1.03500 1.02649 0.86997 1.21929 1.08925 0.98186 0.92140 1.20219 1.17906 0.94966 0.94327 1.17814 0.75585 0.82450 0.86985 1.90654 1.57171 1.83732 1.16394 1.45440 1.66704 1.11758 1.10089 1.22134 0.95408 0.86172 0.93097 0.90563 1.21936 0.96595 0.90965 0.87460 1.44689 1.05636 1.55082 1.28900 1.19423 0.86866 1.21841 1.08287 0.89788 1.25651 1.01272 1.01416 0.97789 1.70141 1.26911 1.43148 1.19697 0.85158 0.78898 0.78248 0.77077 1.20124 1.22520 1.20151 1.21621 0.85059 0.97096 0.94759 1.21826 0.94498 0.94608 0.96566 1.21660 0.98297 1.00035 0.97935 1.21682 0.98882 0.99442 0.98267 1.20378 1.00672 0.91010 0.90317 1.20459 1.03101 1.02000 0.88647 0.92461 0.93739 0.87938 0.87696 0.86402 0.89302 0.89692 0.90131 0.83519 0.76146 0.99813 0.91620 0.94867 0.95029 0.95515 0.91793 0.90227 0.92666 0.94756 0.90028 0.91310 0.91414 0.90660 0.88697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.16 10.24 71.98 0.74 -1.42 16 2 C 0.09 1.14 6.10 86.38 0.53 1.66 16 3 N -0.43 -9.95 2.69 -495.48 -1.33 -11.28 16 4 C 0.02 0.42 6.85 40.98 0.28 0.70 16 5 C -0.08 -1.08 9.81 71.24 0.70 -0.39 16 6 C -0.19 -5.62 10.45 23.62 0.25 -5.37 16 7 C -0.26 -9.64 6.29 -19.04 -0.12 -9.76 16 8 C 0.58 25.23 7.81 86.62 0.68 25.90 16 9 O -0.60 -29.56 14.51 -4.13 -0.06 -29.62 16 10 N -0.69 -28.09 4.62 -439.37 -2.03 -30.12 16 11 C 0.14 5.94 2.61 46.38 0.12 6.06 16 12 H 0.08 3.39 7.53 -2.39 -0.02 3.37 16 13 C 0.16 8.60 5.28 86.83 0.46 9.06 16 14 N -0.62 -33.07 3.40 -691.73 -2.35 -35.42 16 15 C -0.24 -13.69 10.27 84.03 0.86 -12.82 16 16 H 0.08 4.61 7.83 -2.91 -0.02 4.59 16 17 C -0.07 -4.13 5.49 84.86 0.47 -3.67 16 18 N -0.95 -61.35 10.09 21.65 0.22 -61.13 16 19 Si 0.98 48.03 29.55 68.60 2.03 50.06 16 20 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 21 H -0.30 -14.92 7.11 99.48 0.71 -14.22 16 22 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 23 C 0.14 5.78 6.41 86.73 0.56 6.34 16 24 C -0.07 -2.55 0.80 -50.99 -0.04 -2.59 16 25 C -0.12 -3.16 8.07 71.98 0.58 -2.57 16 26 C -0.13 -3.87 8.41 71.98 0.61 -3.27 16 27 C 0.09 2.89 6.89 41.78 0.29 3.17 16 28 C -0.08 -2.35 9.51 71.23 0.68 -1.67 16 29 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.04 0.77 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.10 1.08 6.87 -2.39 -0.02 1.07 16 33 H 0.12 0.91 7.52 -2.39 -0.02 0.89 16 34 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 35 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 36 H 0.08 0.83 7.60 -2.39 -0.02 0.81 16 37 H 0.15 3.99 7.70 -2.91 -0.02 3.96 16 38 H 0.40 14.80 6.15 -92.70 -0.57 14.23 16 39 H -0.02 -0.95 7.80 -2.39 -0.02 -0.97 16 40 H 0.07 4.26 5.88 -2.39 -0.01 4.25 16 41 H 0.24 15.38 8.31 -92.71 -0.77 14.61 16 42 H 0.03 1.25 7.76 -2.39 -0.02 1.23 16 43 H 0.03 1.10 7.84 -2.39 -0.02 1.08 16 44 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 45 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 46 H 0.05 1.41 6.42 -2.39 -0.02 1.40 16 47 H 0.03 1.25 7.57 -2.39 -0.02 1.23 16 48 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 49 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 50 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 51 H 0.07 2.50 6.49 -2.38 -0.02 2.48 16 52 H 0.09 1.79 6.92 -2.39 -0.02 1.77 16 Total: -1.00 -81.85 405.05 4.43 -77.42 By element: Atomic # 1 Polarization: 30.37 SS G_CDS: 0.33 Total: 30.71 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: 7.62 Total: 9.38 kcal Atomic # 7 Polarization: -132.45 SS G_CDS: -5.49 Total: -137.94 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -0.06 Total: -29.62 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -81.85 4.43 -77.42 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000974795645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.727 kcal (2) G-P(sol) polarization free energy of solvation -81.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds