Wall clock time and date at job start Tue Mar 31 2020 18:05:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47444 * 2 1 4 4 C 1.36449 * 124.85281 * 89.97341 * 3 2 1 5 5 C 1.50697 * 125.57019 * 0.02562 * 4 3 2 6 6 C 1.34485 * 108.85710 * 180.02562 * 4 3 2 7 7 C 1.46691 * 106.33247 * 0.02562 * 6 4 3 8 8 C 1.47266 * 126.94133 * 180.02562 * 7 6 4 9 9 O 1.21632 * 119.99700 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99985 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47647 * 324.99616 * 11 10 8 13 13 C 1.53003 * 109.47554 * 84.99645 * 11 10 8 14 14 C 1.52999 * 109.46886 * 59.99613 * 13 11 10 15 15 C 1.53001 * 109.47427 * 60.00307 * 14 13 11 16 16 C 1.52999 * 109.47009 * 300.00051 * 15 14 13 17 17 H 1.09002 * 109.47025 * 299.99808 * 16 15 14 18 18 N 1.46503 * 109.47201 * 179.97438 * 16 15 14 19 19 C 1.36936 * 119.99956 * 85.00327 * 18 16 15 20 20 H 1.08005 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99998 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99731 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47306 * 60.00151 * 23 21 19 25 25 H 1.48498 * 109.47013 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47481 * 300.00035 * 23 21 19 27 27 C 1.53005 * 109.47369 * 59.99822 * 16 15 14 28 28 C 1.34659 * 124.84712 * 270.31102 * 3 2 1 29 29 C 1.50696 * 125.80650 * 359.97438 * 28 3 2 30 30 H 1.09000 * 109.47652 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46727 * 300.00658 * 1 2 3 32 32 H 1.08997 * 109.47022 * 60.00145 * 1 2 3 33 33 H 1.08997 * 109.47002 * 239.99395 * 2 1 3 34 34 H 1.09005 * 109.46731 * 120.00046 * 2 1 3 35 35 H 1.09003 * 109.46932 * 269.99819 * 5 4 3 36 36 H 1.08998 * 109.47245 * 30.00147 * 5 4 3 37 37 H 1.08999 * 109.47044 * 149.99917 * 5 4 3 38 38 H 1.07997 * 126.83481 * 179.97438 * 6 4 3 39 39 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 40 40 H 1.08992 * 109.47381 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47131 * 300.00223 * 13 11 10 42 42 H 1.09001 * 109.47355 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47561 * 300.00501 * 14 13 11 44 44 H 1.09002 * 109.47288 * 59.99324 * 15 14 13 45 45 H 1.08998 * 109.47584 * 179.97438 * 15 14 13 46 46 H 0.96994 * 119.99783 * 264.99480 * 18 16 15 47 47 H 0.96997 * 119.99859 * 180.02562 * 22 21 19 48 48 H 1.08991 * 109.47527 * 180.02562 * 27 16 15 49 49 H 1.08992 * 109.47051 * 60.00008 * 27 16 15 50 50 H 1.08999 * 109.47578 * 270.21830 * 29 28 3 51 51 H 1.09003 * 109.46646 * 30.21792 * 29 28 3 52 52 H 1.08998 * 109.47333 * 150.21550 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2779 2.1165 1.1197 5 6 2.1094 1.6405 2.5396 6 6 2.7085 3.3354 0.7491 7 6 2.7111 3.3437 -0.7178 8 6 3.1052 4.4582 -1.5959 9 8 3.0578 4.3265 -2.8041 10 7 3.5185 5.6241 -1.0607 11 6 3.9100 6.7330 -1.9343 12 1 4.3947 6.3384 -2.8273 13 6 2.6666 7.5279 -2.3381 14 6 1.9862 8.0818 -1.0847 15 6 2.9582 8.9991 -0.3398 16 6 4.2016 8.2043 0.0639 17 1 3.9103 7.3792 0.7139 18 7 5.1326 9.0827 0.7766 19 6 4.9870 9.2867 2.1228 20 1 4.1855 8.8003 2.6591 21 6 5.8688 10.1194 2.7981 22 7 6.8451 10.7124 2.1444 23 14 5.6696 10.3983 4.6343 24 1 5.7843 9.1007 5.3474 25 1 6.7296 11.3218 5.1125 26 1 4.3364 10.9945 4.9028 27 6 4.8821 7.6503 -1.1895 28 6 2.2693 2.1086 -1.1051 29 6 2.0961 1.6403 -2.5269 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.0998 1.8680 2.8817 36 1 2.2741 0.5639 2.5838 37 1 2.8325 2.1452 3.1802 38 1 2.9946 4.1471 1.4016 39 1 3.5559 5.7292 -0.0972 40 1 2.9580 8.3531 -2.9877 41 1 1.9741 6.8744 -2.8686 42 1 1.1001 8.6478 -1.3722 43 1 1.6948 7.2568 -0.4346 44 1 3.2497 9.8241 -0.9898 45 1 2.4733 9.3941 0.5529 46 1 5.8522 9.5196 0.2949 47 1 7.4616 11.2940 2.6162 48 1 5.7677 7.0837 -0.9019 49 1 5.1735 8.4753 -1.8394 50 1 3.0220 1.1816 -2.8739 51 1 1.2890 0.9091 -2.5728 52 1 1.8518 2.4914 -3.1626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981208404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:25 Heat of formation + Delta-G solvation = -3.913700 kcal Electronic energy + Delta-G solvation = -29535.905838 eV Core-core repulsion = 25728.260061 eV Total energy + Delta-G solvation = -3807.645777 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.61495 -39.60600 -37.60750 -34.38124 -34.33914 -32.92678 -32.69148 -31.08692 -30.07599 -29.40854 -28.81673 -27.76162 -25.07781 -23.97613 -23.64468 -22.23360 -21.76821 -20.94104 -20.21625 -18.79786 -18.57738 -17.13309 -16.98681 -16.02351 -15.62567 -15.32548 -15.13131 -14.82764 -14.53596 -14.30583 -13.74809 -13.67978 -13.53706 -13.43090 -13.36927 -13.25008 -13.06122 -12.96332 -12.70012 -12.53508 -12.32678 -12.26018 -11.96732 -11.80143 -11.70649 -11.69284 -11.60514 -11.41468 -10.95496 -10.83989 -10.66541 -10.28754 -10.17347 -10.07021 -9.66570 -9.54415 -9.43745 -8.85847 -8.76592 -8.53908 -8.02025 -6.92408 -5.73802 -3.02206 1.78818 2.32813 2.59345 3.45083 3.49579 3.50575 3.66944 3.76846 4.25789 4.47434 4.55964 4.60444 4.69778 4.75835 4.99901 5.08049 5.11015 5.13553 5.19661 5.23847 5.30865 5.33632 5.38845 5.49540 5.54864 5.56619 5.63011 5.69505 5.70177 5.79766 5.84403 5.87972 5.91055 5.99734 6.08966 6.17902 6.20917 6.22643 6.40118 6.42608 6.61149 6.67100 6.77492 6.81633 6.90399 7.02474 7.04013 7.15749 7.17877 7.71542 7.94634 8.44914 8.63483 9.55839 10.14429 10.49048 11.48904 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.003020 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.776633 B = 9268.899477 C =10855.978728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.439 5.439 4 C 0.009 3.991 5 C -0.083 4.083 6 C -0.162 4.162 7 C -0.230 4.230 8 C 0.591 3.409 9 O -0.561 6.561 10 N -0.713 5.713 11 C 0.153 3.847 12 H 0.082 0.918 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.136 4.136 16 C 0.181 3.819 17 H 0.042 0.958 18 N -0.725 5.725 19 C -0.237 4.237 20 H 0.069 0.931 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.905 3.095 24 H -0.286 1.286 25 H -0.292 1.292 26 H -0.287 1.287 27 C -0.133 4.133 28 C 0.102 3.898 29 C -0.091 4.091 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.082 0.918 38 H 0.146 0.854 39 H 0.402 0.598 40 H 0.067 0.933 41 H 0.060 0.940 42 H 0.051 0.949 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.068 0.932 49 H 0.075 0.925 50 H 0.074 0.926 51 H 0.058 0.942 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.622 -22.312 -5.953 26.317 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.027 4.027 3 N -0.117 5.117 4 C -0.099 4.099 5 C -0.140 4.140 6 C -0.186 4.186 7 C -0.240 4.240 8 C 0.380 3.620 9 O -0.442 6.442 10 N -0.364 5.364 11 C 0.049 3.951 12 H 0.100 0.900 13 C -0.165 4.165 14 C -0.153 4.153 15 C -0.176 4.176 16 C 0.071 3.929 17 H 0.059 0.941 18 N -0.365 5.365 19 C -0.368 4.368 20 H 0.087 0.913 21 C -0.210 4.210 22 N -0.582 5.582 23 Si 0.736 3.264 24 H -0.213 1.213 25 H -0.218 1.218 26 H -0.213 1.213 27 C -0.172 4.172 28 C -0.014 4.014 29 C -0.149 4.149 30 H 0.093 0.907 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.108 0.892 34 H 0.109 0.891 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.101 0.899 38 H 0.163 0.837 39 H 0.238 0.762 40 H 0.086 0.914 41 H 0.079 0.921 42 H 0.070 0.930 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.217 0.783 47 H 0.065 0.935 48 H 0.087 0.913 49 H 0.093 0.907 50 H 0.092 0.908 51 H 0.077 0.923 52 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -12.769 -22.704 -6.569 26.864 hybrid contribution 0.149 0.498 1.506 1.593 sum -12.620 -22.206 -5.064 26.039 Atomic orbital electron populations 1.22168 0.94256 1.02945 1.03414 1.21841 0.95643 0.80866 1.04368 1.43609 1.51271 1.11648 1.05125 1.20159 1.08465 0.92658 0.88571 1.20322 1.02935 1.00960 0.89811 1.21861 1.06647 0.96865 0.93247 1.20141 1.15720 0.94966 0.93191 1.17331 0.76139 0.81553 0.86928 1.90687 1.55782 1.83040 1.14696 1.45959 1.67088 1.12651 1.10703 1.20895 0.94856 0.86001 0.93397 0.89951 1.21886 0.97348 0.99274 0.97970 1.21498 0.98061 0.99134 0.96633 1.22271 0.97301 0.98491 0.99550 1.20142 0.89644 0.92196 0.90900 0.94052 1.42421 1.33347 1.54522 1.06204 1.19184 1.10299 1.22649 0.84680 0.91305 1.24728 0.98084 1.00269 0.97909 1.69647 1.18598 1.34926 1.35005 0.86297 0.76978 0.77535 0.85556 1.21307 1.21771 1.21341 1.22119 0.97999 0.98786 0.98285 1.20220 1.01215 0.91007 0.88992 1.20537 1.01724 1.02841 0.89752 0.90737 0.91718 0.91734 0.89196 0.89112 0.91156 0.92057 0.89910 0.83652 0.76181 0.91388 0.92128 0.93047 0.92527 0.92653 0.92207 0.78285 0.93514 0.91309 0.90686 0.90775 0.92273 0.88040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.90 10.24 37.16 0.38 -0.52 16 2 C 0.09 0.58 6.08 -4.04 -0.02 0.55 16 3 N -0.44 -4.37 2.69 -107.97 -0.29 -4.66 16 4 C 0.01 0.09 6.85 -81.87 -0.56 -0.47 16 5 C -0.08 -0.62 10.06 36.00 0.36 -0.26 16 6 C -0.16 -2.05 10.45 -37.50 -0.39 -2.44 16 7 C -0.23 -3.25 6.29 -103.35 -0.65 -3.90 16 8 C 0.59 9.35 7.77 -12.59 -0.10 9.25 16 9 O -0.56 -9.97 14.48 5.25 0.08 -9.90 16 10 N -0.71 -10.68 4.23 -54.93 -0.23 -10.91 16 11 C 0.15 2.33 2.78 -67.93 -0.19 2.14 16 12 H 0.08 1.29 7.58 -51.93 -0.39 0.90 16 13 C -0.13 -1.83 5.60 -26.73 -0.15 -1.98 16 14 C -0.11 -1.73 5.77 -26.73 -0.15 -1.89 16 15 C -0.14 -2.44 5.50 -26.73 -0.15 -2.58 16 16 C 0.18 3.50 2.60 -67.93 -0.18 3.32 16 17 H 0.04 0.80 6.44 -51.93 -0.33 0.47 16 18 N -0.72 -17.85 5.12 -53.42 -0.27 -18.12 16 19 C -0.24 -6.48 9.93 -15.06 -0.15 -6.63 16 20 H 0.07 1.82 7.83 -52.48 -0.41 1.41 16 21 C -0.01 -0.40 5.50 -17.43 -0.10 -0.49 16 22 N -0.93 -28.12 13.06 55.49 0.72 -27.40 16 23 Si 0.91 22.28 29.55 -169.99 -5.02 17.26 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C -0.13 -2.22 5.08 -26.72 -0.14 -2.36 16 28 C 0.10 1.24 6.89 -81.88 -0.56 0.67 16 29 C -0.09 -0.93 9.26 36.00 0.33 -0.60 16 30 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.06 0.40 8.11 -51.93 -0.42 -0.02 16 33 H 0.09 0.45 7.51 -51.93 -0.39 0.06 16 34 H 0.09 0.43 6.90 -51.93 -0.36 0.07 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.36 6.94 -51.93 -0.36 0.00 16 37 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.15 1.73 7.69 -52.49 -0.40 1.33 16 39 H 0.40 5.88 5.99 -40.82 -0.24 5.63 16 40 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 41 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 43 H 0.06 0.86 7.60 -51.93 -0.39 0.46 16 44 H 0.05 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 46 H 0.38 10.12 7.80 -40.82 -0.32 9.80 16 47 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 48 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.06 0.45 7.56 -51.93 -0.39 0.06 16 52 H 0.10 1.24 6.47 -51.93 -0.34 0.90 16 LS Contribution 407.53 15.07 6.14 6.14 Total: -1.00 -32.68 407.53 -10.26 -42.93 By element: Atomic # 1 Polarization: 21.80 SS G_CDS: -8.97 Total: 12.83 kcal Atomic # 6 Polarization: -5.77 SS G_CDS: -2.41 Total: -8.18 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.07 Total: -61.09 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.08 Total: -9.90 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.68 -10.26 -42.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981208404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.020 kcal (2) G-P(sol) polarization free energy of solvation -32.678 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.342 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds