Wall clock time and date at job start Tue Mar 31 2020 18:05:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46497 * 109.47444 * 2 1 4 4 C 1.36449 * 124.85281 * 89.97341 * 3 2 1 5 5 C 1.50697 * 125.57019 * 0.02562 * 4 3 2 6 6 C 1.34485 * 108.85710 * 180.02562 * 4 3 2 7 7 C 1.46691 * 106.33247 * 0.02562 * 6 4 3 8 8 C 1.47266 * 126.94133 * 180.02562 * 7 6 4 9 9 O 1.21632 * 119.99700 * 180.02562 * 8 7 6 10 10 N 1.34777 * 119.99985 * 0.02562 * 8 7 6 11 11 C 1.46496 * 119.99613 * 180.02562 * 10 8 7 12 12 H 1.09002 * 109.47647 * 324.99616 * 11 10 8 13 13 C 1.53003 * 109.47554 * 84.99645 * 11 10 8 14 14 C 1.52999 * 109.46886 * 59.99613 * 13 11 10 15 15 C 1.53001 * 109.47427 * 60.00307 * 14 13 11 16 16 C 1.52999 * 109.47009 * 300.00051 * 15 14 13 17 17 H 1.09002 * 109.47025 * 299.99808 * 16 15 14 18 18 N 1.46503 * 109.47201 * 179.97438 * 16 15 14 19 19 C 1.36936 * 119.99956 * 85.00327 * 18 16 15 20 20 H 1.08005 * 119.99852 * 359.97438 * 19 18 16 21 21 C 1.38815 * 119.99998 * 180.02562 * 19 18 16 22 22 N 1.31614 * 119.99731 * 359.97438 * 21 19 18 23 23 Si 1.86795 * 119.99834 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.47306 * 60.00151 * 23 21 19 25 25 H 1.48498 * 109.47013 * 180.02562 * 23 21 19 26 26 H 1.48496 * 109.47481 * 300.00035 * 23 21 19 27 27 C 1.53005 * 109.47369 * 59.99822 * 16 15 14 28 28 C 1.34659 * 124.84712 * 270.31102 * 3 2 1 29 29 C 1.50696 * 125.80650 * 359.97438 * 28 3 2 30 30 H 1.09000 * 109.47652 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46727 * 300.00658 * 1 2 3 32 32 H 1.08997 * 109.47022 * 60.00145 * 1 2 3 33 33 H 1.08997 * 109.47002 * 239.99395 * 2 1 3 34 34 H 1.09005 * 109.46731 * 120.00046 * 2 1 3 35 35 H 1.09003 * 109.46932 * 269.99819 * 5 4 3 36 36 H 1.08998 * 109.47245 * 30.00147 * 5 4 3 37 37 H 1.08999 * 109.47044 * 149.99917 * 5 4 3 38 38 H 1.07997 * 126.83481 * 179.97438 * 6 4 3 39 39 H 0.96996 * 119.99871 * 359.97438 * 10 8 7 40 40 H 1.08992 * 109.47381 * 179.97438 * 13 11 10 41 41 H 1.09000 * 109.47131 * 300.00223 * 13 11 10 42 42 H 1.09001 * 109.47355 * 180.02562 * 14 13 11 43 43 H 1.09002 * 109.47561 * 300.00501 * 14 13 11 44 44 H 1.09002 * 109.47288 * 59.99324 * 15 14 13 45 45 H 1.08998 * 109.47584 * 179.97438 * 15 14 13 46 46 H 0.96994 * 119.99783 * 264.99480 * 18 16 15 47 47 H 0.96997 * 119.99859 * 180.02562 * 22 21 19 48 48 H 1.08991 * 109.47527 * 180.02562 * 27 16 15 49 49 H 1.08992 * 109.47051 * 60.00008 * 27 16 15 50 50 H 1.08999 * 109.47578 * 270.21830 * 29 28 3 51 51 H 1.09003 * 109.46646 * 30.21792 * 29 28 3 52 52 H 1.08998 * 109.47333 * 150.21550 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2779 2.1165 1.1197 5 6 2.1094 1.6405 2.5396 6 6 2.7085 3.3354 0.7491 7 6 2.7111 3.3437 -0.7178 8 6 3.1052 4.4582 -1.5959 9 8 3.0578 4.3265 -2.8041 10 7 3.5185 5.6241 -1.0607 11 6 3.9100 6.7330 -1.9343 12 1 4.3947 6.3384 -2.8273 13 6 2.6666 7.5279 -2.3381 14 6 1.9862 8.0818 -1.0847 15 6 2.9582 8.9991 -0.3398 16 6 4.2016 8.2043 0.0639 17 1 3.9103 7.3792 0.7139 18 7 5.1326 9.0827 0.7766 19 6 4.9870 9.2867 2.1228 20 1 4.1855 8.8003 2.6591 21 6 5.8688 10.1194 2.7981 22 7 6.8451 10.7124 2.1444 23 14 5.6696 10.3983 4.6343 24 1 5.7843 9.1007 5.3474 25 1 6.7296 11.3218 5.1125 26 1 4.3364 10.9945 4.9028 27 6 4.8821 7.6503 -1.1895 28 6 2.2693 2.1086 -1.1051 29 6 2.0961 1.6403 -2.5269 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 1.0998 1.8680 2.8817 36 1 2.2741 0.5639 2.5838 37 1 2.8325 2.1452 3.1802 38 1 2.9946 4.1471 1.4016 39 1 3.5559 5.7292 -0.0972 40 1 2.9580 8.3531 -2.9877 41 1 1.9741 6.8744 -2.8686 42 1 1.1001 8.6478 -1.3722 43 1 1.6948 7.2568 -0.4346 44 1 3.2497 9.8241 -0.9898 45 1 2.4733 9.3941 0.5529 46 1 5.8522 9.5196 0.2949 47 1 7.4616 11.2940 2.6162 48 1 5.7677 7.0837 -0.9019 49 1 5.1735 8.4753 -1.8394 50 1 3.0220 1.1816 -2.8739 51 1 1.2890 0.9091 -2.5728 52 1 1.8518 2.4914 -3.1626 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981208404.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:24 Heat of formation + Delta-G solvation = -22.302627 kcal Electronic energy + Delta-G solvation = -29536.703242 eV Core-core repulsion = 25728.260061 eV Total energy + Delta-G solvation = -3808.443181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.46105 -40.88051 -38.97254 -36.09569 -35.04139 -34.29556 -33.55832 -32.89853 -31.19876 -30.18369 -29.83275 -29.35405 -26.00707 -25.62695 -24.60382 -23.38375 -22.90612 -22.42217 -21.26467 -19.99516 -19.70268 -18.99804 -18.01352 -17.04097 -16.75656 -16.47107 -16.36797 -16.13507 -15.64556 -15.62606 -15.22624 -14.95919 -14.76241 -14.56850 -14.37688 -14.11374 -13.98594 -13.84792 -13.68802 -13.48153 -13.47545 -13.17035 -13.02930 -12.99145 -12.87595 -12.85799 -12.74502 -12.48535 -12.26135 -12.23169 -12.08321 -12.05855 -11.93313 -11.56944 -11.43378 -10.98030 -10.82115 -10.75422 -9.96900 -9.49231 -8.96783 -8.90640 -7.90468 -5.18451 0.79476 1.44507 1.48789 1.51523 1.57367 1.84903 2.51209 2.58618 2.63693 3.42533 3.68096 3.78922 3.79902 3.89033 3.91527 3.95863 4.11501 4.16823 4.26776 4.32408 4.36266 4.37336 4.38892 4.51446 4.58256 4.62502 4.69785 4.71401 4.75005 4.77718 4.80887 4.83904 4.87662 4.96698 4.99195 5.06362 5.11566 5.13662 5.21266 5.24543 5.25353 5.35796 5.39380 5.52406 5.54932 5.60909 5.72632 5.86440 6.16864 6.31535 6.40123 6.74065 7.37600 7.42640 8.14086 8.37382 9.32984 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012454 B = 0.003020 C = 0.002579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2247.776633 B = 9268.899477 C =10855.978728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.015 3.985 5 C -0.081 4.081 6 C -0.190 4.190 7 C -0.266 4.266 8 C 0.588 3.412 9 O -0.587 6.587 10 N -0.711 5.711 11 C 0.160 3.840 12 H 0.080 0.920 13 C -0.119 4.119 14 C -0.104 4.104 15 C -0.126 4.126 16 C 0.179 3.821 17 H 0.042 0.958 18 N -0.737 5.737 19 C -0.235 4.235 20 H 0.075 0.925 21 C -0.077 4.077 22 N -0.971 5.971 23 Si 0.969 3.031 24 H -0.277 1.277 25 H -0.298 1.298 26 H -0.279 1.279 27 C -0.120 4.120 28 C 0.099 3.901 29 C -0.086 4.086 30 H 0.098 0.902 31 H 0.057 0.943 32 H 0.052 0.948 33 H 0.104 0.896 34 H 0.111 0.889 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.083 0.917 38 H 0.142 0.858 39 H 0.403 0.597 40 H 0.079 0.921 41 H 0.060 0.940 42 H 0.068 0.932 43 H 0.056 0.944 44 H 0.050 0.950 45 H 0.041 0.959 46 H 0.372 0.628 47 H 0.249 0.751 48 H 0.058 0.942 49 H 0.078 0.922 50 H 0.079 0.921 51 H 0.087 0.913 52 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.368 -24.773 -5.319 29.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.035 4.035 3 N -0.109 5.109 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.214 4.214 7 C -0.276 4.276 8 C 0.379 3.621 9 O -0.470 6.470 10 N -0.362 5.362 11 C 0.055 3.945 12 H 0.098 0.902 13 C -0.158 4.158 14 C -0.142 4.142 15 C -0.166 4.166 16 C 0.071 3.929 17 H 0.060 0.940 18 N -0.376 5.376 19 C -0.367 4.367 20 H 0.093 0.907 21 C -0.269 4.269 22 N -0.622 5.622 23 Si 0.799 3.201 24 H -0.203 1.203 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.159 4.159 28 C -0.019 4.019 29 C -0.143 4.143 30 H 0.117 0.883 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.122 0.878 34 H 0.129 0.871 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.160 0.840 39 H 0.239 0.761 40 H 0.098 0.902 41 H 0.079 0.921 42 H 0.087 0.913 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.060 0.940 46 H 0.204 0.796 47 H 0.058 0.942 48 H 0.077 0.923 49 H 0.097 0.903 50 H 0.097 0.903 51 H 0.106 0.894 52 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -14.567 -25.213 -5.931 29.716 hybrid contribution 0.638 1.149 1.279 1.834 sum -13.929 -24.064 -4.652 28.191 Atomic orbital electron populations 1.22140 0.93428 1.04259 1.02473 1.22224 0.96278 0.78784 1.06168 1.43890 1.50014 1.12811 1.04196 1.20623 1.06519 0.92044 0.90103 1.20419 1.03592 1.02280 0.87541 1.21953 1.08557 0.98130 0.92716 1.20194 1.18081 0.95527 0.93824 1.17645 0.75641 0.81950 0.86884 1.90660 1.57106 1.83509 1.15737 1.45926 1.67014 1.12595 1.10625 1.20792 0.94860 0.85833 0.93003 0.90185 1.21833 0.96742 0.99425 0.97784 1.21392 0.97807 0.98576 0.96418 1.22089 0.96927 0.98578 0.98995 1.20328 0.89523 0.91513 0.91547 0.94046 1.42620 1.34012 1.55190 1.05763 1.19566 1.09648 1.21482 0.85956 0.90672 1.25518 0.98336 1.00920 1.02150 1.69809 1.19743 1.36171 1.36457 0.85269 0.76753 0.77467 0.80652 1.20278 1.22478 1.20559 1.21960 0.97771 0.98946 0.97229 1.20481 1.00340 0.90776 0.90308 1.20503 1.02998 1.02585 0.88260 0.88285 0.92422 0.92903 0.87753 0.87075 0.90087 0.89884 0.89850 0.83983 0.76080 0.90212 0.92115 0.91346 0.92544 0.93155 0.94025 0.79644 0.94191 0.92293 0.90300 0.90259 0.89410 0.90304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 71.98 0.74 -0.51 16 2 C 0.09 0.77 6.08 86.38 0.53 1.30 16 3 N -0.43 -7.77 2.69 -495.49 -1.33 -9.10 16 4 C 0.02 0.31 6.85 40.98 0.28 0.59 16 5 C -0.08 -1.01 10.06 71.23 0.72 -0.29 16 6 C -0.19 -4.79 10.45 23.62 0.25 -4.54 16 7 C -0.27 -7.57 6.29 -19.04 -0.12 -7.69 16 8 C 0.59 18.91 7.77 86.62 0.67 19.58 16 9 O -0.59 -21.21 14.48 -4.13 -0.06 -21.27 16 10 N -0.71 -21.54 4.23 -445.93 -1.89 -23.42 16 11 C 0.16 4.84 2.78 45.00 0.13 4.97 16 12 H 0.08 2.51 7.58 -2.39 -0.02 2.49 16 13 C -0.12 -3.34 5.60 30.59 0.17 -3.17 16 14 C -0.10 -3.00 5.77 30.59 0.18 -2.83 16 15 C -0.13 -4.47 5.50 30.59 0.17 -4.31 16 16 C 0.18 6.96 2.60 44.99 0.12 7.07 16 17 H 0.04 1.62 6.44 -2.39 -0.02 1.60 16 18 N -0.74 -36.87 5.12 -322.92 -1.65 -38.52 16 19 C -0.23 -12.92 9.93 84.03 0.83 -12.08 16 20 H 0.08 3.96 7.83 -2.91 -0.02 3.94 16 21 C -0.08 -4.43 5.50 84.86 0.47 -3.97 16 22 N -0.97 -59.69 13.06 21.65 0.28 -59.41 16 23 Si 0.97 46.12 29.55 68.60 2.03 48.15 16 24 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 25 H -0.30 -14.41 7.11 99.48 0.71 -13.70 16 26 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 27 C -0.12 -4.04 5.08 30.60 0.16 -3.89 16 28 C 0.10 2.32 6.89 41.78 0.29 2.61 16 29 C -0.09 -1.67 9.26 71.23 0.66 -1.01 16 30 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 32 H 0.05 0.54 8.11 -2.39 -0.02 0.52 16 33 H 0.10 0.68 7.51 -2.39 -0.02 0.67 16 34 H 0.11 0.59 6.90 -2.38 -0.02 0.58 16 35 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 36 H 0.08 0.68 6.94 -2.39 -0.02 0.66 16 37 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.14 3.48 7.69 -2.91 -0.02 3.46 16 39 H 0.40 12.01 5.99 -92.71 -0.56 11.46 16 40 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.06 1.65 7.60 -2.39 -0.02 1.63 16 44 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 46 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 47 H 0.25 14.96 8.31 -92.71 -0.77 14.19 16 48 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 49 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 50 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 51 H 0.09 1.14 7.56 -2.39 -0.02 1.12 16 52 H 0.08 1.93 6.47 -2.39 -0.02 1.92 16 Total: -1.00 -71.38 407.53 3.24 -68.14 By element: Atomic # 1 Polarization: 43.97 SS G_CDS: -0.36 Total: 43.61 kcal Atomic # 6 Polarization: -14.40 SS G_CDS: 6.22 Total: -8.18 kcal Atomic # 7 Polarization: -125.86 SS G_CDS: -4.59 Total: -130.45 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.06 Total: -21.27 kcal Atomic # 14 Polarization: 46.12 SS G_CDS: 2.03 Total: 48.15 kcal Total: -71.38 3.24 -68.14 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981208404.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.833 kcal (2) G-P(sol) polarization free energy of solvation -71.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.136 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds