Wall clock time and date at job start Tue Mar 31 2020 18:06:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46507 * 109.46731 * 2 1 4 4 C 1.36449 * 124.85056 * 90.02747 * 3 2 1 5 5 C 1.50700 * 125.57229 * 0.03165 * 4 3 2 6 6 C 1.34479 * 108.85322 * 179.97438 * 4 3 2 7 7 C 1.46684 * 106.33571 * 359.97438 * 6 4 3 8 8 C 1.47267 * 126.94167 * 179.97438 * 7 6 4 9 9 O 1.21628 * 119.99971 * 180.02562 * 8 7 6 10 10 N 1.34775 * 119.99826 * 0.02562 * 8 7 6 11 11 C 1.46507 * 119.99666 * 180.02562 * 10 8 7 12 12 H 1.08997 * 109.49476 * 35.00259 * 11 10 8 13 13 C 1.53040 * 109.49725 * 274.93294 * 11 10 8 14 14 C 1.53034 * 109.53892 * 178.71494 * 13 11 10 15 15 C 1.53190 * 109.33894 * 61.31921 * 14 13 11 16 16 N 1.46930 * 108.77599 * 305.38255 * 15 14 13 17 17 C 1.36939 * 120.62599 * 233.62898 * 16 15 14 18 18 H 1.08005 * 119.99247 * 150.13873 * 17 16 15 19 19 C 1.38805 * 120.00352 * 330.14437 * 17 16 15 20 20 N 1.31626 * 119.99959 * 344.49924 * 19 17 16 21 21 Si 1.86797 * 120.00292 * 164.50386 * 19 17 16 22 22 H 1.48503 * 109.47119 * 89.99535 * 21 19 17 23 23 H 1.48497 * 109.47349 * 209.99535 * 21 19 17 24 24 H 1.48503 * 109.47009 * 329.99726 * 21 19 17 25 25 C 1.46925 * 118.73854 * 53.60426 * 16 15 14 26 26 H 1.09003 * 109.69956 * 66.25387 * 25 16 15 27 27 C 1.52995 * 109.58349 * 186.60472 * 25 16 15 28 28 C 1.34651 * 124.84974 * 269.72071 * 3 2 1 29 29 C 1.50701 * 125.80161 * 359.97438 * 28 3 2 30 30 H 1.09007 * 109.47325 * 299.99668 * 1 2 3 31 31 H 1.08999 * 109.47267 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47174 * 60.00206 * 1 2 3 33 33 H 1.09003 * 109.47174 * 119.99794 * 2 1 3 34 34 H 1.08996 * 109.46936 * 239.99992 * 2 1 3 35 35 H 1.09000 * 109.47340 * 89.99861 * 5 4 3 36 36 H 1.08995 * 109.47065 * 210.00468 * 5 4 3 37 37 H 1.09003 * 109.47149 * 329.99977 * 5 4 3 38 38 H 1.08006 * 126.83393 * 179.97438 * 6 4 3 39 39 H 0.96998 * 120.00600 * 0.02562 * 10 8 7 40 40 H 1.08991 * 109.46405 * 298.71005 * 13 11 10 41 41 H 1.09009 * 109.45376 * 58.66637 * 13 11 10 42 42 H 1.09005 * 109.47322 * 301.36581 * 14 13 11 43 43 H 1.09000 * 109.52525 * 181.30153 * 14 13 11 44 44 H 1.09004 * 109.58899 * 185.59196 * 15 14 13 45 45 H 1.09003 * 109.58669 * 65.16884 * 15 14 13 46 46 H 0.96993 * 120.00105 * 180.02562 * 20 19 17 47 47 H 1.08998 * 109.47203 * 179.28831 * 27 25 16 48 48 H 1.09005 * 109.47583 * 299.29073 * 27 25 16 49 49 H 1.09003 * 109.47329 * 59.29370 * 27 25 16 50 50 H 1.08999 * 109.47421 * 90.00183 * 29 28 3 51 51 H 1.09009 * 109.46773 * 210.00210 * 29 28 3 52 52 H 1.09000 * 109.47044 * 329.99603 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2786 2.1163 1.1198 5 6 2.1116 1.6397 2.5396 6 6 2.7098 3.3350 0.7492 7 6 2.7130 3.3430 -0.7177 8 6 3.1069 4.4577 -1.5958 9 8 3.0601 4.3259 -2.8040 10 7 3.5193 5.6239 -1.0605 11 6 3.9107 6.7329 -1.9342 12 1 3.2846 6.7316 -2.8264 13 6 5.3776 6.5710 -2.3391 14 6 5.7784 7.7116 -3.2774 15 6 5.6229 9.0486 -2.5460 16 7 4.2516 9.1473 -2.0276 17 6 3.4708 10.2330 -2.3223 18 1 2.3978 10.1260 -2.3823 19 6 4.0584 11.4708 -2.5441 20 7 5.3058 11.6818 -2.1807 21 14 3.0790 12.8373 -3.3582 22 1 2.3800 13.6331 -2.3174 23 1 3.9990 13.7191 -4.1208 24 1 2.0795 12.2461 -4.2838 25 6 3.7339 8.0588 -1.1875 26 1 4.2857 8.0255 -0.2480 27 6 2.2491 8.2929 -0.9022 28 6 2.2798 2.1050 -1.1050 29 6 2.1204 1.6317 -2.5269 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 1.8933 -0.5138 -0.8900 35 1 3.0404 1.1828 2.8812 36 1 1.8661 2.4865 3.1805 37 1 1.3075 0.9052 2.5842 38 1 2.9967 4.1464 1.4017 39 1 3.5570 5.7289 -0.0970 40 1 6.0052 6.5966 -1.4484 41 1 5.5102 5.6169 -2.8493 42 1 5.1352 7.7013 -4.1574 43 1 6.8165 7.5833 -3.5841 44 1 5.8114 9.8685 -3.2392 45 1 6.3307 9.0970 -1.7185 46 1 5.7163 12.5469 -2.3353 47 1 1.8640 7.4779 -0.2895 48 1 2.1255 9.2367 -0.3710 49 1 1.7000 8.3309 -1.8431 50 1 1.1130 1.8598 -2.8750 51 1 2.8476 2.1379 -3.1619 52 1 2.2856 0.5553 -2.5722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993553645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:38 Heat of formation + Delta-G solvation = -2.721874 kcal Electronic energy + Delta-G solvation = -29720.434621 eV Core-core repulsion = 25912.840525 eV Total energy + Delta-G solvation = -3807.594096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.44176 -40.68125 -39.00081 -35.81752 -35.00537 -34.18817 -33.56855 -33.35652 -31.22178 -30.17659 -29.80008 -27.87501 -26.88635 -25.85860 -24.67813 -23.69777 -22.49472 -22.28924 -21.17573 -20.79540 -19.53041 -18.30497 -17.88157 -17.19660 -16.87503 -16.52335 -16.32095 -15.70417 -15.67776 -15.57695 -15.32190 -14.90654 -14.66622 -14.44801 -14.30402 -14.23844 -14.05876 -13.99582 -13.70233 -13.44878 -13.32969 -13.20958 -13.15058 -12.84924 -12.79088 -12.71035 -12.51589 -12.46417 -12.36176 -12.23176 -12.09399 -12.01291 -11.80662 -11.74910 -11.58525 -11.15558 -10.72940 -10.51699 -9.96143 -9.47821 -8.89131 -8.62815 -7.84478 -5.30745 0.80275 1.46695 1.47660 1.49003 1.58174 1.85076 2.40808 2.59760 2.65208 3.31008 3.64777 3.79339 3.80945 3.88992 3.94037 4.06053 4.12068 4.17411 4.23285 4.32197 4.38281 4.40437 4.51946 4.53920 4.63678 4.67005 4.69917 4.77661 4.79775 4.84510 4.86581 4.90481 4.94042 4.98439 5.05427 5.07874 5.14904 5.15448 5.24000 5.26531 5.31583 5.38188 5.45012 5.53615 5.66388 5.71698 5.78050 5.88352 6.18481 6.41615 6.43576 6.79552 7.17633 7.46724 7.87584 8.40288 9.22750 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021859 B = 0.002563 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.636879 B =10924.012453 C =11131.044043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.086 3.914 3 N -0.433 5.433 4 C 0.015 3.985 5 C -0.080 4.080 6 C -0.185 4.185 7 C -0.264 4.264 8 C 0.585 3.415 9 O -0.593 6.593 10 N -0.706 5.706 11 C 0.151 3.849 12 H 0.055 0.945 13 C -0.108 4.108 14 C -0.129 4.129 15 C 0.177 3.823 16 N -0.600 5.600 17 C -0.254 4.254 18 H 0.070 0.930 19 C -0.048 4.048 20 N -0.933 5.933 21 Si 0.962 3.038 22 H -0.283 1.283 23 H -0.293 1.293 24 H -0.274 1.274 25 C 0.166 3.834 26 H 0.031 0.969 27 C -0.126 4.126 28 C 0.096 3.904 29 C -0.087 4.087 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.048 0.952 33 H 0.114 0.886 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.154 0.846 39 H 0.407 0.593 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.044 0.956 43 H 0.073 0.927 44 H 0.055 0.945 45 H 0.004 0.996 46 H 0.249 0.751 47 H 0.070 0.930 48 H 0.050 0.950 49 H 0.039 0.961 50 H 0.075 0.925 51 H 0.073 0.927 52 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.530 -27.453 9.659 30.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 N -0.109 5.109 4 C -0.093 4.093 5 C -0.138 4.138 6 C -0.208 4.208 7 C -0.274 4.274 8 C 0.376 3.624 9 O -0.476 6.476 10 N -0.356 5.356 11 C 0.044 3.956 12 H 0.073 0.927 13 C -0.147 4.147 14 C -0.168 4.168 15 C 0.052 3.948 16 N -0.324 5.324 17 C -0.384 4.384 18 H 0.088 0.912 19 C -0.244 4.244 20 N -0.579 5.579 21 Si 0.790 3.210 22 H -0.210 1.210 23 H -0.219 1.219 24 H -0.199 1.199 25 C 0.060 3.940 26 H 0.049 0.951 27 C -0.183 4.183 28 C -0.022 4.022 29 C -0.144 4.144 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.068 0.932 33 H 0.132 0.868 34 H 0.120 0.880 35 H 0.101 0.899 36 H 0.107 0.893 37 H 0.098 0.902 38 H 0.172 0.828 39 H 0.243 0.757 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.091 0.909 44 H 0.073 0.927 45 H 0.022 0.978 46 H 0.058 0.942 47 H 0.089 0.911 48 H 0.069 0.931 49 H 0.058 0.942 50 H 0.094 0.906 51 H 0.092 0.908 52 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -7.614 -27.719 8.854 30.078 hybrid contribution -0.029 1.525 -0.291 1.552 sum -7.643 -26.194 8.563 28.598 Atomic orbital electron populations 1.22139 0.93550 1.04219 1.02418 1.22216 0.96184 0.78847 1.06168 1.43888 1.49855 1.12956 1.04231 1.20706 1.06431 0.92066 0.90081 1.20428 1.03261 1.02769 0.87294 1.21992 1.08375 0.98326 0.92127 1.20139 1.18069 0.94953 0.94209 1.17778 0.75482 0.82197 0.86928 1.90684 1.57496 1.82990 1.16414 1.45682 1.67059 1.12377 1.10449 1.21235 0.95030 0.86024 0.93328 0.92709 1.21671 0.95947 0.97688 0.99347 1.22021 1.00573 0.96025 0.98221 1.20621 0.84826 0.94208 0.95163 1.44267 1.12509 1.19101 1.56512 1.19424 0.91164 0.86711 1.41122 0.91229 1.25780 0.97651 0.99156 1.01782 1.70170 1.14442 1.23066 1.50254 0.85363 0.77888 0.79335 0.78393 1.20961 1.21945 1.19947 1.20682 0.94703 0.86731 0.91924 0.95133 1.21707 0.94839 1.01124 1.00665 1.20408 1.00565 0.91045 0.90218 1.20480 1.03410 1.01854 0.88672 0.92209 0.88316 0.93248 0.86827 0.87959 0.89913 0.89322 0.90208 0.82820 0.75713 0.91854 0.92914 0.93732 0.90886 0.92686 0.97784 0.94186 0.91085 0.93104 0.94173 0.90616 0.90803 0.89242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.25 10.24 71.98 0.74 -0.51 16 2 C 0.09 0.74 6.10 86.38 0.53 1.27 16 3 N -0.43 -7.48 2.69 -495.48 -1.33 -8.81 16 4 C 0.02 0.27 6.85 40.98 0.28 0.55 16 5 C -0.08 -0.74 9.81 71.24 0.70 -0.04 16 6 C -0.18 -4.14 10.45 23.62 0.25 -3.90 16 7 C -0.26 -7.52 6.29 -19.04 -0.12 -7.64 16 8 C 0.59 20.40 7.77 86.62 0.67 21.07 16 9 O -0.59 -24.58 14.48 -4.12 -0.06 -24.63 16 10 N -0.71 -23.15 4.57 -445.57 -2.04 -25.18 16 11 C 0.15 5.89 1.99 45.07 0.09 5.98 16 12 H 0.05 2.50 7.58 -2.39 -0.02 2.48 16 13 C -0.11 -4.12 5.46 30.62 0.17 -3.96 16 14 C -0.13 -5.36 6.08 30.67 0.19 -5.17 16 15 C 0.18 8.87 5.28 86.36 0.46 9.33 16 16 N -0.60 -30.75 2.99 -675.23 -2.02 -32.77 16 17 C -0.25 -14.09 8.58 84.03 0.72 -13.36 16 18 H 0.07 3.78 6.23 -2.91 -0.02 3.76 16 19 C -0.05 -2.73 4.94 84.86 0.42 -2.31 16 20 N -0.93 -55.64 11.23 21.65 0.24 -55.40 16 21 Si 0.96 45.78 29.58 68.60 2.03 47.81 16 22 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 23 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 24 H -0.27 -12.70 7.11 99.48 0.71 -12.00 16 25 C 0.17 7.04 3.03 44.97 0.14 7.18 16 26 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 27 C -0.13 -4.91 7.84 71.98 0.56 -4.35 16 28 C 0.10 2.30 6.89 41.78 0.29 2.59 16 29 C -0.09 -1.87 9.51 71.24 0.68 -1.19 16 30 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.11 0.49 7.51 -2.39 -0.02 0.47 16 34 H 0.10 0.67 6.87 -2.39 -0.02 0.66 16 35 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.08 0.47 7.60 -2.39 -0.02 0.46 16 38 H 0.15 2.92 7.70 -2.91 -0.02 2.90 16 39 H 0.41 11.23 7.73 -92.71 -0.72 10.52 16 40 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 41 H 0.05 2.01 8.14 -2.38 -0.02 1.99 16 42 H 0.04 1.94 8.14 -2.38 -0.02 1.92 16 43 H 0.07 2.68 8.14 -2.39 -0.02 2.66 16 44 H 0.05 3.09 6.15 -2.39 -0.01 3.07 16 45 H 0.00 0.21 8.14 -2.39 -0.02 0.19 16 46 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 47 H 0.07 2.29 7.78 -2.39 -0.02 2.27 16 48 H 0.05 2.08 7.67 -2.38 -0.02 2.06 16 49 H 0.04 1.66 7.40 -2.39 -0.02 1.64 16 50 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 51 H 0.07 2.04 6.48 -2.38 -0.02 2.02 16 52 H 0.09 1.28 6.92 -2.39 -0.02 1.26 16 Total: -1.00 -73.28 403.58 3.77 -69.51 By element: Atomic # 1 Polarization: 23.74 SS G_CDS: 0.19 Total: 23.93 kcal Atomic # 6 Polarization: -1.22 SS G_CDS: 6.75 Total: 5.53 kcal Atomic # 7 Polarization: -117.02 SS G_CDS: -5.14 Total: -122.16 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: -0.06 Total: -24.63 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.03 Total: 47.81 kcal Total: -73.28 3.77 -69.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993553645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.793 kcal (2) G-P(sol) polarization free energy of solvation -73.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.489 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.515 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds