Wall clock time and date at job start Tue Mar 31 2020 18:06:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47108 * 2 1 4 4 C 1.36449 * 124.85070 * 270.02156 * 3 2 1 5 5 C 1.50693 * 125.56967 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85489 * 179.68911 * 4 3 2 7 7 C 1.46691 * 106.33374 * 0.43483 * 6 4 3 8 8 C 1.47264 * 126.94112 * 179.82970 * 7 6 4 9 9 O 1.21632 * 119.99980 * 179.68942 * 8 7 6 10 10 N 1.34776 * 120.00065 * 359.68943 * 8 7 6 11 11 C 1.46501 * 119.99926 * 180.27568 * 10 8 7 12 12 H 1.09004 * 109.49753 * 324.79038 * 11 10 8 13 13 C 1.53043 * 109.49766 * 84.88190 * 11 10 8 14 14 C 1.53040 * 109.53457 * 58.58981 * 13 11 10 15 15 C 1.53190 * 109.31706 * 61.36423 * 14 13 11 16 16 N 1.46934 * 108.77401 * 305.36591 * 15 14 13 17 17 C 1.36930 * 120.62844 * 233.63160 * 16 15 14 18 18 H 1.08005 * 120.00237 * 150.14499 * 17 16 15 19 19 C 1.38812 * 120.00160 * 330.14308 * 17 16 15 20 20 N 1.31622 * 119.99896 * 344.50606 * 19 17 16 21 21 Si 1.86802 * 120.00125 * 164.50672 * 19 17 16 22 22 H 1.48491 * 109.47216 * 59.99785 * 21 19 17 23 23 H 1.48507 * 109.46951 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46820 * 299.99761 * 21 19 17 25 25 C 1.46929 * 118.73787 * 53.60541 * 16 15 14 26 26 H 1.08993 * 109.70253 * 66.24830 * 25 16 15 27 27 C 1.53001 * 109.58308 * 186.60756 * 25 16 15 28 28 C 1.34658 * 124.85248 * 89.99623 * 3 2 1 29 29 C 1.50708 * 125.80222 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.46955 * 59.99969 * 1 2 3 31 31 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47541 * 300.00244 * 1 2 3 33 33 H 1.08998 * 109.47541 * 239.99756 * 2 1 3 34 34 H 1.09008 * 109.47340 * 119.99283 * 2 1 3 35 35 H 1.08998 * 109.47570 * 89.99849 * 5 4 3 36 36 H 1.09005 * 109.47000 * 209.99499 * 5 4 3 37 37 H 1.09002 * 109.47508 * 329.99718 * 5 4 3 38 38 H 1.08004 * 126.83676 * 180.26860 * 6 4 3 39 39 H 0.96997 * 119.99929 * 359.97438 * 10 8 7 40 40 H 1.09006 * 109.46135 * 178.60602 * 13 11 10 41 41 H 1.08995 * 109.46484 * 298.56811 * 13 11 10 42 42 H 1.09005 * 109.49845 * 301.40779 * 14 13 11 43 43 H 1.09008 * 109.52245 * 181.33249 * 14 13 11 44 44 H 1.09000 * 109.58792 * 185.58002 * 15 14 13 45 45 H 1.08995 * 109.58574 * 65.14841 * 15 14 13 46 46 H 0.97000 * 119.99464 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.46801 * 179.29361 * 27 25 16 48 48 H 1.09002 * 109.46831 * 299.28592 * 27 25 16 49 49 H 1.08992 * 109.47294 * 59.29083 * 27 25 16 50 50 H 1.08994 * 109.47019 * 270.00308 * 29 28 3 51 51 H 1.09002 * 109.46739 * 29.99679 * 29 28 3 52 52 H 1.08996 * 109.47486 * 149.99692 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2778 2.1165 -1.1198 5 6 2.1095 1.6404 -2.5396 6 6 2.7024 3.3376 -0.7492 7 6 2.7115 3.3436 0.7177 8 6 3.1054 4.4583 1.5958 9 8 3.0590 4.3263 2.8040 10 7 3.5172 5.6247 1.0605 11 6 3.9148 6.7315 1.9341 12 1 3.2906 6.7320 2.8277 13 6 5.3821 6.5639 2.3353 14 6 6.2555 6.5298 1.0791 15 6 6.1090 7.8547 0.3240 16 7 4.6833 8.0942 0.0615 17 6 4.2406 8.3453 -1.2097 18 1 3.2424 8.0538 -1.5014 19 6 5.0748 8.9745 -2.1236 20 7 6.1559 9.5988 -1.7066 21 14 4.6630 8.9354 -3.9452 22 1 3.3408 9.5737 -4.1676 23 1 5.7039 9.6743 -4.7040 24 1 4.6173 7.5265 -4.4122 25 6 3.7417 8.0586 1.1888 26 1 3.9477 8.8875 1.8659 27 6 2.3088 8.1690 0.6638 28 6 2.2747 2.1068 1.1050 29 6 2.1088 1.6360 2.5270 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.0999 1.8677 -2.8818 36 1 2.8326 2.1453 -3.1802 37 1 2.2743 0.5638 -2.5838 38 1 2.9835 4.1511 -1.4017 39 1 3.5545 5.7298 0.0970 40 1 5.6843 7.4008 2.9651 41 1 5.5035 5.6320 2.8874 42 1 5.9377 5.7081 0.4372 43 1 7.2979 6.3867 1.3639 44 1 6.6501 7.7987 -0.6205 45 1 6.5104 8.6669 0.9300 46 1 6.7386 10.0388 -2.3452 47 1 1.6113 8.1298 1.5005 48 1 2.1878 9.1138 0.1339 49 1 2.1066 7.3421 -0.0169 50 1 1.0998 1.8646 2.8700 51 1 2.2735 0.5595 2.5749 52 1 2.8329 2.1430 3.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000993553647.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:43 Heat of formation + Delta-G solvation = 17.395800 kcal Electronic energy + Delta-G solvation = -30564.233538 eV Core-core repulsion = 26757.511810 eV Total energy + Delta-G solvation = -3806.721728 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -41.43822 -39.23798 -37.27519 -34.21890 -33.78173 -32.62293 -32.26265 -31.56648 -29.79355 -29.25437 -28.74512 -26.22567 -25.00647 -24.72648 -23.81829 -22.20390 -21.38585 -20.63778 -19.86113 -18.66373 -18.34559 -16.86075 -16.30081 -15.89644 -15.37650 -15.22108 -14.78757 -14.68191 -14.38492 -13.85281 -13.61073 -13.54526 -13.32480 -13.26702 -13.18002 -12.98147 -12.84725 -12.81184 -12.50909 -12.45635 -12.38345 -12.09630 -11.74796 -11.69814 -11.55169 -11.28078 -11.16716 -11.11670 -10.91069 -10.64537 -10.51854 -10.43121 -10.05006 -9.92284 -9.55619 -9.26318 -9.20127 -8.54000 -8.44424 -8.21887 -7.83144 -6.59886 -5.75901 -3.20752 1.98479 2.51545 2.74965 3.38409 3.44589 3.44925 4.00731 4.05093 4.37276 4.49945 4.60200 4.67638 4.82972 4.87722 5.15177 5.23455 5.25747 5.27406 5.38511 5.40295 5.45652 5.55373 5.63544 5.66138 5.71285 5.75679 5.79451 5.81931 5.87700 6.04419 6.06866 6.08401 6.23518 6.33511 6.37910 6.48630 6.55431 6.63999 6.78532 6.82655 6.89758 6.96260 7.04085 7.09195 7.19388 7.30934 7.35239 7.46651 7.72634 7.83362 8.35621 8.48302 8.96438 9.24120 9.87338 10.45424 11.32164 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003915 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.215667 B = 7150.087320 C = 8578.045526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.095 3.905 3 N -0.440 5.440 4 C 0.005 3.995 5 C -0.081 4.081 6 C -0.159 4.159 7 C -0.225 4.225 8 C 0.586 3.414 9 O -0.569 6.569 10 N -0.696 5.696 11 C 0.136 3.864 12 H 0.074 0.926 13 C -0.120 4.120 14 C -0.140 4.140 15 C 0.173 3.827 16 N -0.585 5.585 17 C -0.254 4.254 18 H 0.069 0.931 19 C 0.006 3.994 20 N -0.901 5.901 21 Si 0.899 3.101 22 H -0.283 1.283 23 H -0.292 1.292 24 H -0.284 1.284 25 C 0.160 3.840 26 H 0.038 0.962 27 C -0.135 4.135 28 C 0.097 3.903 29 C -0.089 4.089 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.068 0.932 36 H 0.081 0.919 37 H 0.059 0.941 38 H 0.147 0.853 39 H 0.408 0.592 40 H 0.060 0.940 41 H 0.050 0.950 42 H 0.054 0.946 43 H 0.045 0.955 44 H 0.084 0.916 45 H 0.017 0.983 46 H 0.253 0.747 47 H 0.038 0.962 48 H 0.061 0.939 49 H 0.054 0.946 50 H 0.072 0.928 51 H 0.056 0.944 52 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.729 -18.558 2.732 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.027 4.027 3 N -0.118 5.118 4 C -0.102 4.102 5 C -0.139 4.139 6 C -0.183 4.183 7 C -0.235 4.235 8 C 0.375 3.625 9 O -0.451 6.451 10 N -0.346 5.346 11 C 0.030 3.970 12 H 0.092 0.908 13 C -0.159 4.159 14 C -0.179 4.179 15 C 0.047 3.953 16 N -0.309 5.309 17 C -0.383 4.383 18 H 0.087 0.913 19 C -0.193 4.193 20 N -0.545 5.545 21 Si 0.729 3.271 22 H -0.210 1.210 23 H -0.218 1.218 24 H -0.210 1.210 25 C 0.053 3.947 26 H 0.055 0.945 27 C -0.193 4.193 28 C -0.019 4.019 29 C -0.146 4.146 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.087 0.913 36 H 0.100 0.900 37 H 0.078 0.922 38 H 0.164 0.836 39 H 0.244 0.756 40 H 0.078 0.922 41 H 0.068 0.932 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.102 0.898 45 H 0.035 0.965 46 H 0.063 0.937 47 H 0.057 0.943 48 H 0.080 0.920 49 H 0.073 0.927 50 H 0.091 0.909 51 H 0.075 0.925 52 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.747 -18.830 3.421 21.042 hybrid contribution -0.021 0.123 -1.531 1.536 sum -8.768 -18.707 1.890 20.746 Atomic orbital electron populations 1.22148 0.94335 1.02793 1.03388 1.21814 0.95584 0.81071 1.04197 1.43572 1.51413 1.11667 1.05154 1.20123 1.08984 0.92665 0.88464 1.20300 1.02821 1.00793 0.89957 1.21913 1.06266 0.96708 0.93413 1.20219 1.15067 0.94968 0.93228 1.17341 0.76456 0.81873 0.86875 1.90661 1.57123 1.82618 1.14740 1.45763 1.65358 1.12264 1.11166 1.21469 0.94802 0.87644 0.93132 0.90783 1.21763 0.95512 1.00658 0.97937 1.22135 0.97311 1.01583 0.96888 1.20775 0.85289 0.90416 0.98807 1.44131 1.02306 1.81982 1.02478 1.19108 1.00304 1.32169 0.86730 0.91319 1.25088 0.98510 0.97181 0.98513 1.70020 1.15611 1.35844 1.32992 0.86436 0.77417 0.77611 0.85664 1.20958 1.21794 1.21038 1.20715 0.90945 0.92336 0.90729 0.94496 1.21776 0.95211 1.02424 0.99852 1.20189 1.01596 0.91213 0.88895 1.20508 1.04032 1.00132 0.89901 0.91773 0.90857 0.91758 0.89273 0.89290 0.91283 0.90002 0.92184 0.83553 0.75592 0.92174 0.93162 0.92745 0.93666 0.89756 0.96505 0.93677 0.94283 0.91951 0.92683 0.90929 0.92500 0.88082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.10 10.24 37.16 0.38 -0.72 16 2 C 0.09 0.71 6.30 -4.04 -0.03 0.69 16 3 N -0.44 -5.11 2.69 -107.96 -0.29 -5.40 16 4 C 0.00 0.06 6.85 -81.87 -0.56 -0.50 16 5 C -0.08 -0.73 10.06 36.00 0.36 -0.37 16 6 C -0.16 -2.38 10.45 -37.50 -0.39 -2.77 16 7 C -0.23 -3.70 6.29 -103.35 -0.65 -4.35 16 8 C 0.59 10.88 7.77 -12.59 -0.10 10.78 16 9 O -0.57 -11.57 14.48 5.25 0.08 -11.49 16 10 N -0.70 -12.87 3.46 -54.81 -0.19 -13.06 16 11 C 0.14 2.59 2.32 -67.81 -0.16 2.43 16 12 H 0.07 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.12 -2.26 5.57 -26.69 -0.15 -2.41 16 14 C -0.14 -2.79 5.93 -26.61 -0.16 -2.95 16 15 C 0.17 4.06 5.28 -3.71 -0.02 4.04 16 16 N -0.59 -13.83 2.64 -164.78 -0.44 -14.27 16 17 C -0.25 -6.48 8.58 -15.06 -0.13 -6.61 16 18 H 0.07 1.71 6.23 -52.48 -0.33 1.38 16 19 C 0.01 0.16 4.94 -17.43 -0.09 0.08 16 20 N -0.90 -25.50 11.23 55.49 0.62 -24.87 16 21 Si 0.90 21.03 29.58 -169.99 -5.03 16.00 16 22 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.16 3.29 3.20 -67.60 -0.22 3.08 16 26 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 27 C -0.14 -2.57 7.72 37.16 0.29 -2.29 16 28 C 0.10 1.35 6.89 -81.88 -0.56 0.79 16 29 C -0.09 -1.05 9.52 36.01 0.34 -0.71 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.53 6.90 -51.93 -0.36 0.17 16 34 H 0.09 0.56 6.88 -51.92 -0.36 0.21 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.43 6.94 -51.93 -0.36 0.07 16 38 H 0.15 2.18 7.70 -52.48 -0.40 1.78 16 39 H 0.41 7.77 6.90 -40.82 -0.28 7.49 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 41 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 42 H 0.05 1.12 7.53 -51.93 -0.39 0.73 16 43 H 0.04 0.84 8.14 -51.92 -0.42 0.41 16 44 H 0.08 2.21 6.15 -51.93 -0.32 1.89 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.25 7.01 8.31 -40.82 -0.34 6.68 16 47 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 48 H 0.06 1.26 7.67 -51.93 -0.40 0.86 16 49 H 0.05 1.05 6.37 -51.93 -0.33 0.72 16 50 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 51 H 0.06 0.51 6.92 -51.93 -0.36 0.15 16 52 H 0.10 1.43 6.47 -51.93 -0.34 1.09 16 LS Contribution 399.55 15.07 6.02 6.02 Total: -1.00 -30.59 399.55 -9.88 -40.47 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -8.82 Total: 8.40 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -1.83 Total: -1.80 kcal Atomic # 7 Polarization: -57.31 SS G_CDS: -0.29 Total: -57.60 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.08 Total: -11.49 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.03 Total: 16.00 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -30.59 -9.88 -40.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993553647.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.869 kcal (2) G-P(sol) polarization free energy of solvation -30.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds