Wall clock time and date at job start Tue Mar 31 2020 18:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46504 * 109.47108 * 2 1 4 4 C 1.36449 * 124.85070 * 270.02156 * 3 2 1 5 5 C 1.50693 * 125.56967 * 359.97438 * 4 3 2 6 6 C 1.34485 * 108.85489 * 179.68911 * 4 3 2 7 7 C 1.46691 * 106.33374 * 0.43483 * 6 4 3 8 8 C 1.47264 * 126.94112 * 179.82970 * 7 6 4 9 9 O 1.21632 * 119.99980 * 179.68942 * 8 7 6 10 10 N 1.34776 * 120.00065 * 359.68943 * 8 7 6 11 11 C 1.46501 * 119.99926 * 180.27568 * 10 8 7 12 12 H 1.09004 * 109.49753 * 324.79038 * 11 10 8 13 13 C 1.53043 * 109.49766 * 84.88190 * 11 10 8 14 14 C 1.53040 * 109.53457 * 58.58981 * 13 11 10 15 15 C 1.53190 * 109.31706 * 61.36423 * 14 13 11 16 16 N 1.46934 * 108.77401 * 305.36591 * 15 14 13 17 17 C 1.36930 * 120.62844 * 233.63160 * 16 15 14 18 18 H 1.08005 * 120.00237 * 150.14499 * 17 16 15 19 19 C 1.38812 * 120.00160 * 330.14308 * 17 16 15 20 20 N 1.31622 * 119.99896 * 344.50606 * 19 17 16 21 21 Si 1.86802 * 120.00125 * 164.50672 * 19 17 16 22 22 H 1.48491 * 109.47216 * 59.99785 * 21 19 17 23 23 H 1.48507 * 109.46951 * 180.02562 * 21 19 17 24 24 H 1.48498 * 109.46820 * 299.99761 * 21 19 17 25 25 C 1.46929 * 118.73787 * 53.60541 * 16 15 14 26 26 H 1.08993 * 109.70253 * 66.24830 * 25 16 15 27 27 C 1.53001 * 109.58308 * 186.60756 * 25 16 15 28 28 C 1.34658 * 124.85248 * 89.99623 * 3 2 1 29 29 C 1.50708 * 125.80222 * 0.02562 * 28 3 2 30 30 H 1.09000 * 109.46955 * 59.99969 * 1 2 3 31 31 H 1.09001 * 109.46791 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47541 * 300.00244 * 1 2 3 33 33 H 1.08998 * 109.47541 * 239.99756 * 2 1 3 34 34 H 1.09008 * 109.47340 * 119.99283 * 2 1 3 35 35 H 1.08998 * 109.47570 * 89.99849 * 5 4 3 36 36 H 1.09005 * 109.47000 * 209.99499 * 5 4 3 37 37 H 1.09002 * 109.47508 * 329.99718 * 5 4 3 38 38 H 1.08004 * 126.83676 * 180.26860 * 6 4 3 39 39 H 0.96997 * 119.99929 * 359.97438 * 10 8 7 40 40 H 1.09006 * 109.46135 * 178.60602 * 13 11 10 41 41 H 1.08995 * 109.46484 * 298.56811 * 13 11 10 42 42 H 1.09005 * 109.49845 * 301.40779 * 14 13 11 43 43 H 1.09008 * 109.52245 * 181.33249 * 14 13 11 44 44 H 1.09000 * 109.58792 * 185.58002 * 15 14 13 45 45 H 1.08995 * 109.58574 * 65.14841 * 15 14 13 46 46 H 0.97000 * 119.99464 * 180.02562 * 20 19 17 47 47 H 1.09003 * 109.46801 * 179.29361 * 27 25 16 48 48 H 1.09002 * 109.46831 * 299.28592 * 27 25 16 49 49 H 1.08992 * 109.47294 * 59.29083 * 27 25 16 50 50 H 1.08994 * 109.47019 * 270.00308 * 29 28 3 51 51 H 1.09002 * 109.46739 * 29.99679 * 29 28 3 52 52 H 1.08996 * 109.47486 * 149.99692 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2778 2.1165 -1.1198 5 6 2.1095 1.6404 -2.5396 6 6 2.7024 3.3376 -0.7492 7 6 2.7115 3.3436 0.7177 8 6 3.1054 4.4583 1.5958 9 8 3.0590 4.3263 2.8040 10 7 3.5172 5.6247 1.0605 11 6 3.9148 6.7315 1.9341 12 1 3.2906 6.7320 2.8277 13 6 5.3821 6.5639 2.3353 14 6 6.2555 6.5298 1.0791 15 6 6.1090 7.8547 0.3240 16 7 4.6833 8.0942 0.0615 17 6 4.2406 8.3453 -1.2097 18 1 3.2424 8.0538 -1.5014 19 6 5.0748 8.9745 -2.1236 20 7 6.1559 9.5988 -1.7066 21 14 4.6630 8.9354 -3.9452 22 1 3.3408 9.5737 -4.1676 23 1 5.7039 9.6743 -4.7040 24 1 4.6173 7.5265 -4.4122 25 6 3.7417 8.0586 1.1888 26 1 3.9477 8.8875 1.8659 27 6 2.3088 8.1690 0.6638 28 6 2.2747 2.1068 1.1050 29 6 2.1088 1.6360 2.5270 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.8934 -0.5138 -0.8899 34 1 1.8934 -0.5138 0.8901 35 1 1.0999 1.8677 -2.8818 36 1 2.8326 2.1453 -3.1802 37 1 2.2743 0.5638 -2.5838 38 1 2.9835 4.1511 -1.4017 39 1 3.5545 5.7298 0.0970 40 1 5.6843 7.4008 2.9651 41 1 5.5035 5.6320 2.8874 42 1 5.9377 5.7081 0.4372 43 1 7.2979 6.3867 1.3639 44 1 6.6501 7.7987 -0.6205 45 1 6.5104 8.6669 0.9300 46 1 6.7386 10.0388 -2.3452 47 1 1.6113 8.1298 1.5005 48 1 2.1878 9.1138 0.1339 49 1 2.1066 7.3421 -0.0169 50 1 1.0998 1.8646 2.8700 51 1 2.2735 0.5595 2.5749 52 1 2.8329 2.1430 3.1646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000993553647.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:06:41 Heat of formation + Delta-G solvation = 1.851629 kcal Electronic energy + Delta-G solvation = -30564.907583 eV Core-core repulsion = 26757.511810 eV Total energy + Delta-G solvation = -3807.395774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.43400 -40.76561 -38.88065 -35.53222 -34.99288 -33.94709 -33.56707 -33.30382 -31.30062 -30.17156 -29.82180 -27.88186 -26.83380 -25.88399 -24.62689 -23.69319 -22.70824 -22.31717 -21.11601 -20.17508 -19.52699 -18.21919 -17.95767 -17.04864 -16.86297 -16.40187 -16.30479 -15.88220 -15.67076 -15.57625 -15.08769 -14.79588 -14.61357 -14.39640 -14.32600 -14.20042 -14.04668 -13.97379 -13.67118 -13.53642 -13.43209 -13.15120 -12.93719 -12.86111 -12.82394 -12.68153 -12.49985 -12.42905 -12.33236 -12.21825 -12.13791 -12.06897 -11.92141 -11.65473 -11.33453 -11.00915 -10.69144 -10.46504 -9.86085 -9.45125 -8.88433 -8.57382 -7.79151 -5.25773 0.83640 1.46434 1.51351 1.52835 1.58695 1.87427 2.55305 2.63349 2.69661 3.36752 3.61830 3.80143 3.80586 3.91844 4.01956 4.11428 4.12616 4.17775 4.24048 4.35085 4.41748 4.42455 4.50658 4.58716 4.65722 4.68741 4.71885 4.77915 4.81345 4.81913 4.88173 4.96296 4.99605 5.01232 5.07466 5.08110 5.14624 5.15285 5.24980 5.25441 5.36149 5.39594 5.47152 5.57719 5.73653 5.77688 5.84164 5.88521 6.19145 6.42922 6.47038 6.88531 7.22081 7.51806 7.91962 8.46249 9.27513 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012462 B = 0.003915 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2246.215667 B = 7150.087320 C = 8578.045526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.085 3.915 3 N -0.432 5.432 4 C 0.016 3.984 5 C -0.080 4.080 6 C -0.191 4.191 7 C -0.265 4.265 8 C 0.584 3.416 9 O -0.593 6.593 10 N -0.695 5.695 11 C 0.144 3.856 12 H 0.077 0.923 13 C -0.114 4.114 14 C -0.125 4.125 15 C 0.182 3.818 16 N -0.595 5.595 17 C -0.248 4.248 18 H 0.076 0.924 19 C -0.048 4.048 20 N -0.936 5.936 21 Si 0.959 3.041 22 H -0.277 1.277 23 H -0.301 1.301 24 H -0.276 1.276 25 C 0.158 3.842 26 H 0.032 0.968 27 C -0.126 4.126 28 C 0.099 3.901 29 C -0.084 4.084 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.051 0.949 33 H 0.111 0.889 34 H 0.105 0.895 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.136 0.864 39 H 0.404 0.596 40 H 0.067 0.933 41 H 0.053 0.947 42 H 0.047 0.953 43 H 0.061 0.939 44 H 0.054 0.946 45 H -0.004 1.004 46 H 0.246 0.754 47 H 0.062 0.938 48 H 0.048 0.952 49 H 0.052 0.948 50 H 0.079 0.921 51 H 0.089 0.911 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.411 -21.655 2.289 24.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.034 4.034 3 N -0.109 5.109 4 C -0.092 4.092 5 C -0.137 4.137 6 C -0.214 4.214 7 C -0.275 4.275 8 C 0.374 3.626 9 O -0.477 6.477 10 N -0.344 5.344 11 C 0.038 3.962 12 H 0.095 0.905 13 C -0.152 4.152 14 C -0.164 4.164 15 C 0.056 3.944 16 N -0.319 5.319 17 C -0.378 4.378 18 H 0.094 0.906 19 C -0.243 4.243 20 N -0.582 5.582 21 Si 0.788 3.212 22 H -0.203 1.203 23 H -0.228 1.228 24 H -0.202 1.202 25 C 0.052 3.948 26 H 0.049 0.951 27 C -0.183 4.183 28 C -0.019 4.019 29 C -0.141 4.141 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.130 0.870 34 H 0.123 0.877 35 H 0.099 0.901 36 H 0.099 0.901 37 H 0.103 0.897 38 H 0.154 0.846 39 H 0.240 0.760 40 H 0.086 0.914 41 H 0.071 0.929 42 H 0.066 0.934 43 H 0.079 0.921 44 H 0.072 0.928 45 H 0.014 0.986 46 H 0.055 0.945 47 H 0.081 0.919 48 H 0.067 0.933 49 H 0.071 0.929 50 H 0.097 0.903 51 H 0.108 0.892 52 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -10.464 -21.964 2.980 24.510 hybrid contribution 0.444 1.003 -1.352 1.741 sum -10.019 -20.961 1.628 23.289 Atomic orbital electron populations 1.22123 0.93412 1.04237 1.02416 1.22234 0.96299 0.78730 1.06174 1.43873 1.49989 1.12940 1.04101 1.20583 1.06617 0.91845 0.90150 1.20410 1.03544 1.02299 0.87449 1.21923 1.08647 0.98015 0.92842 1.20219 1.17939 0.95553 0.93790 1.17691 0.75794 0.82167 0.86912 1.90634 1.58270 1.83053 1.15704 1.45716 1.65648 1.12329 1.10721 1.21287 0.94991 0.87008 0.92953 0.90507 1.21706 0.95129 1.01074 0.97307 1.21939 0.98629 0.99020 0.96825 1.20550 0.85075 0.91495 0.97295 1.44296 1.02727 1.81967 1.02934 1.19418 1.00307 1.30582 0.87537 0.90634 1.25773 0.98772 0.97601 1.02151 1.70179 1.16821 1.37467 1.33743 0.85471 0.76884 0.77669 0.81202 1.20332 1.22777 1.20187 1.20825 0.91154 0.93045 0.89821 0.95084 1.21676 0.94662 1.01474 1.00497 1.20445 1.00366 0.90743 0.90346 1.20485 1.03583 1.01852 0.88173 0.92474 0.88199 0.93006 0.87049 0.87670 0.90050 0.90071 0.89674 0.84629 0.76003 0.91412 0.92866 0.93421 0.92054 0.92750 0.98569 0.94452 0.91943 0.93324 0.92882 0.90274 0.89235 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.55 10.24 71.98 0.74 -0.81 16 2 C 0.09 0.94 6.30 86.38 0.54 1.49 16 3 N -0.43 -8.97 2.69 -495.48 -1.33 -10.30 16 4 C 0.02 0.38 6.85 40.98 0.28 0.66 16 5 C -0.08 -1.20 10.06 71.23 0.72 -0.49 16 6 C -0.19 -5.69 10.45 23.62 0.25 -5.44 16 7 C -0.27 -8.72 6.29 -19.04 -0.12 -8.84 16 8 C 0.58 21.89 7.77 86.62 0.67 22.56 16 9 O -0.59 -24.24 14.48 -4.13 -0.06 -24.30 16 10 N -0.70 -25.98 3.46 -445.57 -1.54 -27.52 16 11 C 0.14 5.48 2.32 45.07 0.10 5.59 16 12 H 0.08 2.91 7.58 -2.38 -0.02 2.89 16 13 C -0.11 -4.25 5.57 30.62 0.17 -4.08 16 14 C -0.12 -5.03 5.93 30.67 0.18 -4.85 16 15 C 0.18 8.78 5.28 86.36 0.46 9.24 16 16 N -0.60 -28.68 2.64 -675.23 -1.78 -30.47 16 17 C -0.25 -12.87 8.58 84.03 0.72 -12.15 16 18 H 0.08 3.76 6.23 -2.91 -0.02 3.74 16 19 C -0.05 -2.58 4.94 84.86 0.42 -2.16 16 20 N -0.94 -54.62 11.23 21.65 0.24 -54.38 16 21 Si 0.96 43.86 29.58 68.60 2.03 45.89 16 22 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 23 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 24 H -0.28 -12.14 7.11 99.48 0.71 -11.43 16 25 C 0.16 6.54 3.20 44.97 0.14 6.69 16 26 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 27 C -0.13 -4.75 7.72 71.98 0.56 -4.19 16 28 C 0.10 2.64 6.89 41.78 0.29 2.92 16 29 C -0.08 -1.85 9.52 71.24 0.68 -1.18 16 30 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 32 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 33 H 0.11 0.79 6.90 -2.39 -0.02 0.77 16 34 H 0.11 0.87 6.88 -2.38 -0.02 0.85 16 35 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 37 H 0.08 0.86 6.94 -2.39 -0.02 0.85 16 38 H 0.14 4.18 7.70 -2.91 -0.02 4.15 16 39 H 0.40 15.73 6.90 -92.71 -0.64 15.09 16 40 H 0.07 2.43 8.14 -2.38 -0.02 2.41 16 41 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 42 H 0.05 1.98 7.53 -2.38 -0.02 1.96 16 43 H 0.06 2.25 8.14 -2.38 -0.02 2.23 16 44 H 0.05 2.96 6.15 -2.39 -0.01 2.95 16 45 H 0.00 -0.20 8.14 -2.39 -0.02 -0.22 16 46 H 0.25 14.13 8.31 -92.71 -0.77 13.36 16 47 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 48 H 0.05 1.95 7.67 -2.39 -0.02 1.93 16 49 H 0.05 2.01 6.37 -2.39 -0.02 2.00 16 50 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 51 H 0.09 1.34 6.92 -2.39 -0.02 1.32 16 52 H 0.08 2.12 6.47 -2.39 -0.02 2.10 16 Total: -1.00 -67.90 399.55 4.63 -63.28 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 0.27 Total: 32.82 kcal Atomic # 6 Polarization: -1.83 SS G_CDS: 6.80 Total: 4.97 kcal Atomic # 7 Polarization: -118.25 SS G_CDS: -4.41 Total: -122.66 kcal Atomic # 8 Polarization: -24.24 SS G_CDS: -0.06 Total: -24.30 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -67.90 4.63 -63.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000993553647.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.128 kcal (2) G-P(sol) polarization free energy of solvation -67.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.774 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.276 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds