Wall clock time and date at job start Tue Mar 31 2020 18:01:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46685 * 2 1 4 4 C 1.36450 * 124.85376 * 269.97413 * 3 2 1 5 5 C 1.50699 * 125.57046 * 0.02749 * 4 3 2 6 6 C 1.34485 * 108.85394 * 179.73390 * 4 3 2 7 7 C 1.46686 * 106.33478 * 0.43981 * 6 4 3 8 8 C 1.47262 * 126.93958 * 179.82364 * 7 6 4 9 9 O 1.21628 * 119.99380 * 187.72846 * 8 7 6 10 10 N 1.34770 * 120.00352 * 7.73840 * 8 7 6 11 11 C 1.48388 * 127.17346 * 177.71487 * 10 8 7 12 12 C 1.54937 * 103.37399 * 219.23210 * 11 10 8 13 13 H 1.09000 * 110.89338 * 204.31596 * 12 11 10 14 14 N 1.46506 * 110.73768 * 81.05963 * 12 11 10 15 15 C 1.36940 * 119.99575 * 91.58565 * 14 12 11 16 16 H 1.07993 * 119.99903 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99658 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99904 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47231 * 119.99727 * 19 17 15 22 22 H 1.48495 * 109.47160 * 240.00100 * 19 17 15 23 23 C 1.54622 * 102.83868 * 322.72558 * 12 11 10 24 24 C 1.53001 * 110.32325 * 262.95739 * 23 12 11 25 25 C 1.52998 * 110.41043 * 140.78497 * 23 12 11 26 26 C 1.47482 * 127.03301 * 357.91249 * 10 8 7 27 27 C 1.34658 * 124.84634 * 90.00828 * 3 2 1 28 28 C 1.50697 * 125.80465 * 359.94898 * 27 3 2 29 29 H 1.08992 * 109.47864 * 59.99801 * 1 2 3 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46927 * 299.99139 * 1 2 3 32 32 H 1.08996 * 109.46757 * 240.00372 * 2 1 3 33 33 H 1.09001 * 109.47326 * 120.00012 * 2 1 3 34 34 H 1.09005 * 109.47242 * 89.99608 * 5 4 3 35 35 H 1.08992 * 109.46935 * 209.99816 * 5 4 3 36 36 H 1.09002 * 109.46987 * 330.00343 * 5 4 3 37 37 H 1.08000 * 126.83310 * 180.26541 * 6 4 3 38 38 H 1.09005 * 110.51808 * 100.79162 * 11 10 8 39 39 H 1.08994 * 110.83338 * 337.82540 * 11 10 8 40 40 H 0.96993 * 120.00301 * 271.57853 * 14 12 11 41 41 H 0.97003 * 119.99635 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46635 * 177.08048 * 24 23 12 43 43 H 1.09000 * 109.46928 * 297.07203 * 24 23 12 44 44 H 1.08995 * 109.47525 * 57.07586 * 24 23 12 45 45 H 1.09002 * 109.47490 * 302.86939 * 25 23 12 46 46 H 1.09005 * 109.47551 * 62.87630 * 25 23 12 47 47 H 1.09006 * 109.46537 * 182.87277 * 25 23 12 48 48 H 1.09004 * 109.91374 * 35.16328 * 26 10 8 49 49 H 1.08997 * 109.91828 * 274.07355 * 26 10 8 50 50 H 1.09000 * 109.47193 * 270.00099 * 28 27 3 51 51 H 1.08998 * 109.47056 * 30.00920 * 28 27 3 52 52 H 1.09002 * 109.47060 * 150.00243 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2786 2.1163 -1.1197 5 6 2.1104 1.6402 -2.5396 6 6 2.7037 3.3372 -0.7490 7 6 2.7124 3.3432 0.7178 8 6 3.1068 4.4577 1.5959 9 8 3.2009 4.2825 2.7958 10 7 3.3631 5.6718 1.0700 11 6 3.7239 6.9093 1.8051 12 6 2.9512 8.0161 1.0445 13 1 3.4283 8.9867 1.1804 14 7 1.5522 8.0627 1.4768 15 6 1.1798 8.8899 2.5025 16 1 1.9174 9.5076 2.9931 17 6 -0.1457 8.9337 2.9125 18 7 -1.0446 8.1805 2.3150 19 14 -0.6537 10.0616 4.3122 20 1 0.5357 10.7970 4.8118 21 1 -1.6668 11.0312 3.8239 22 1 -1.2336 9.2526 5.4142 23 6 3.0542 7.5568 -0.4284 24 6 4.2036 8.2812 -1.1318 25 6 1.7363 7.8154 -1.1613 26 6 3.3388 6.0450 -0.3566 27 6 2.2748 2.1066 1.1051 28 6 2.1076 1.6362 2.5270 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1010 1.8683 -2.8821 35 1 2.8340 2.1445 -3.1800 36 1 2.2743 0.5635 -2.5836 37 1 2.9855 4.1503 -1.4015 38 1 4.7984 7.0852 1.7529 39 1 3.3945 6.8539 2.8426 40 1 0.8897 7.5077 1.0364 41 1 -1.9709 8.2113 2.6012 42 1 4.2966 7.9099 -2.1524 43 1 4.0001 9.3519 -1.1519 44 1 5.1329 8.0981 -0.5924 45 1 0.9256 7.3037 -0.6427 46 1 1.5358 8.8867 -1.1814 47 1 1.8087 7.4401 -2.1821 48 1 2.5512 5.4943 -0.8711 49 1 4.3037 5.8269 -0.8141 50 1 1.0986 1.8659 2.8694 51 1 2.2714 0.5597 2.5751 52 1 2.8319 2.1427 3.1649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996014875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:15 Heat of formation + Delta-G solvation = 30.987572 kcal Electronic energy + Delta-G solvation = -30539.625389 eV Core-core repulsion = 26733.493044 eV Total energy + Delta-G solvation = -3806.132345 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.43539 -39.46874 -37.43927 -34.26226 -33.73236 -32.90953 -32.54754 -30.76455 -29.56402 -29.13137 -27.73212 -26.62364 -26.07053 -24.61659 -23.90030 -23.39378 -21.83117 -20.68409 -19.71885 -18.47128 -17.77233 -17.04671 -16.63143 -15.91216 -15.39019 -15.23148 -14.93898 -14.70063 -14.18424 -13.87075 -13.84833 -13.49289 -13.37008 -13.24498 -13.09450 -13.04200 -12.82347 -12.70972 -12.38770 -12.36663 -12.20161 -12.11852 -11.78760 -11.74380 -11.61489 -11.47877 -11.32423 -11.16090 -11.04354 -10.88434 -10.81708 -10.42917 -10.26190 -10.09891 -9.74449 -9.50588 -9.18736 -8.90334 -8.44859 -8.07028 -7.74368 -6.85080 -5.70292 -2.98017 2.04736 2.52230 2.78922 3.48295 3.54208 3.56147 3.70218 4.07211 4.41986 4.63926 4.64544 4.73976 4.85354 4.92510 4.98027 5.13764 5.16187 5.26955 5.30660 5.34663 5.36871 5.43606 5.52550 5.61846 5.67444 5.69861 5.77916 5.79701 5.83352 5.87860 5.89221 5.96101 6.04059 6.06079 6.08857 6.15247 6.31588 6.36962 6.43563 6.47623 6.49399 6.55319 6.73561 6.87628 6.96447 6.99777 7.12423 7.26320 7.36582 7.77230 8.29663 8.48309 8.92854 9.60081 10.17715 10.52214 11.52332 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003864 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.726926 B = 7244.360696 C = 8247.221483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 N -0.439 5.439 4 C 0.003 3.997 5 C -0.080 4.080 6 C -0.173 4.173 7 C -0.219 4.219 8 C 0.608 3.392 9 O -0.557 6.557 10 N -0.600 5.600 11 C 0.079 3.921 12 C 0.176 3.824 13 H 0.069 0.931 14 N -0.709 5.709 15 C -0.239 4.239 16 H 0.071 0.929 17 C -0.011 4.011 18 N -0.930 5.930 19 Si 0.905 3.095 20 H -0.280 1.280 21 H -0.293 1.293 22 H -0.293 1.293 23 C -0.092 4.092 24 C -0.131 4.131 25 C -0.124 4.124 26 C 0.104 3.896 27 C 0.101 3.899 28 C -0.093 4.093 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.059 0.941 37 H 0.154 0.846 38 H 0.052 0.948 39 H 0.085 0.915 40 H 0.387 0.613 41 H 0.253 0.747 42 H 0.051 0.949 43 H 0.058 0.942 44 H 0.053 0.947 45 H 0.067 0.933 46 H 0.060 0.940 47 H 0.040 0.960 48 H 0.083 0.917 49 H 0.058 0.942 50 H 0.075 0.925 51 H 0.057 0.943 52 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.170 -15.566 -12.110 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.026 4.026 3 N -0.117 5.117 4 C -0.104 4.104 5 C -0.137 4.137 6 C -0.196 4.196 7 C -0.228 4.228 8 C 0.400 3.600 9 O -0.437 6.437 10 N -0.332 5.332 11 C -0.046 4.046 12 C 0.063 3.937 13 H 0.087 0.913 14 N -0.351 5.351 15 C -0.370 4.370 16 H 0.089 0.911 17 C -0.207 4.207 18 N -0.579 5.579 19 Si 0.736 3.264 20 H -0.205 1.205 21 H -0.220 1.220 22 H -0.220 1.220 23 C -0.094 4.094 24 C -0.189 4.189 25 C -0.182 4.182 26 C -0.019 4.019 27 C -0.015 4.015 28 C -0.150 4.150 29 H 0.083 0.917 30 H 0.091 0.909 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.107 0.893 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.078 0.922 37 H 0.171 0.829 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.224 0.776 41 H 0.063 0.937 42 H 0.070 0.930 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.085 0.915 46 H 0.079 0.921 47 H 0.059 0.941 48 H 0.101 0.899 49 H 0.076 0.924 50 H 0.094 0.906 51 H 0.076 0.924 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 8.040 -15.949 -11.322 21.147 hybrid contribution -0.662 0.371 0.580 0.956 sum 7.378 -15.577 -10.742 20.309 Atomic orbital electron populations 1.22158 0.94210 1.02802 1.03627 1.21819 0.95718 0.80989 1.04094 1.43579 1.51247 1.11717 1.05119 1.20171 1.09019 0.92758 0.88489 1.20283 1.02760 1.00784 0.89905 1.22291 1.07298 0.96491 0.93549 1.20091 1.15001 0.94572 0.93151 1.16853 0.76209 0.80559 0.86405 1.90693 1.54922 1.82871 1.15256 1.48337 1.68267 1.08757 1.07865 1.23480 0.97474 0.84593 0.99062 1.21324 0.87717 0.95198 0.89452 0.91306 1.42501 1.02428 1.49828 1.40295 1.19301 0.92749 1.16044 1.08935 0.91112 1.24707 0.96068 1.00069 0.99812 1.69679 1.01703 1.42711 1.43773 0.86148 0.78173 0.79995 0.82070 1.20537 1.22003 1.21977 1.21818 0.96257 0.93705 0.97603 1.21805 0.97258 1.00416 0.99413 1.21678 0.96302 1.02521 0.97710 1.22556 1.00744 0.95365 0.83235 1.20189 1.01210 0.91092 0.88970 1.20563 1.04463 1.00137 0.89865 0.91746 0.90857 0.91557 0.89339 0.89273 0.91200 0.90278 0.92170 0.82904 0.92949 0.89686 0.77617 0.93677 0.92962 0.92278 0.92809 0.91450 0.92104 0.94055 0.89935 0.92428 0.90636 0.92399 0.87904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.33 10.24 37.16 0.38 -0.95 16 2 C 0.10 0.79 6.30 -4.04 -0.03 0.76 16 3 N -0.44 -5.42 2.68 -107.96 -0.29 -5.71 16 4 C 0.00 0.04 6.85 -81.86 -0.56 -0.52 16 5 C -0.08 -0.66 10.06 36.01 0.36 -0.30 16 6 C -0.17 -2.52 9.24 -37.50 -0.35 -2.87 16 7 C -0.22 -3.88 6.21 -103.35 -0.64 -4.52 16 8 C 0.61 12.70 7.88 -12.60 -0.10 12.60 16 9 O -0.56 -13.20 15.04 5.25 0.08 -13.12 16 10 N -0.60 -11.59 3.30 -170.87 -0.56 -12.16 16 11 C 0.08 1.58 6.76 -1.98 -0.01 1.57 16 12 C 0.18 3.51 3.15 -66.05 -0.21 3.30 16 13 H 0.07 1.35 7.80 -51.93 -0.41 0.94 16 14 N -0.71 -17.85 4.60 -51.61 -0.24 -18.09 16 15 C -0.24 -6.70 9.96 -15.06 -0.15 -6.85 16 16 H 0.07 1.93 7.83 -52.49 -0.41 1.51 16 17 C -0.01 -0.31 5.50 -17.43 -0.10 -0.40 16 18 N -0.93 -28.65 13.06 55.49 0.72 -27.93 16 19 Si 0.90 22.96 29.55 -169.99 -5.02 17.94 16 20 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 22 H -0.29 -7.56 7.11 56.52 0.40 -7.16 16 23 C -0.09 -1.48 0.94 -153.13 -0.14 -1.62 16 24 C -0.13 -1.67 8.21 37.16 0.31 -1.36 16 25 C -0.12 -2.09 7.68 37.16 0.29 -1.81 16 26 C 0.10 1.64 4.81 -2.98 -0.01 1.62 16 27 C 0.10 1.57 6.89 -81.88 -0.56 1.00 16 28 C -0.09 -1.30 9.61 36.00 0.35 -0.96 16 29 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.09 0.55 6.90 -51.93 -0.36 0.19 16 33 H 0.09 0.64 6.88 -51.93 -0.36 0.28 16 34 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.40 6.94 -51.93 -0.36 0.04 16 37 H 0.15 2.00 5.15 -52.49 -0.27 1.73 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.08 2.00 7.89 -51.93 -0.41 1.59 16 40 H 0.39 10.49 5.65 -40.82 -0.23 10.26 16 41 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 42 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 45 H 0.07 1.35 6.13 -51.93 -0.32 1.03 16 46 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.08 1.28 4.62 -51.93 -0.24 1.04 16 49 H 0.06 0.78 7.67 -51.93 -0.40 0.38 16 50 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 51 H 0.06 0.61 6.92 -51.93 -0.36 0.25 16 52 H 0.10 1.67 6.34 -51.93 -0.33 1.35 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -34.83 402.58 -9.09 -43.91 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: -8.66 Total: 10.40 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -1.18 Total: -1.32 kcal Atomic # 7 Polarization: -63.51 SS G_CDS: -0.37 Total: -63.88 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.08 Total: -13.12 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -5.02 Total: 17.94 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -34.83 -9.09 -43.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996014875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.901 kcal (2) G-P(sol) polarization free energy of solvation -34.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.913 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds