Wall clock time and date at job start Tue Mar 31 2020 18:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46502 * 109.46685 * 2 1 4 4 C 1.36450 * 124.85376 * 269.97413 * 3 2 1 5 5 C 1.50699 * 125.57046 * 0.02749 * 4 3 2 6 6 C 1.34485 * 108.85394 * 179.73390 * 4 3 2 7 7 C 1.46686 * 106.33478 * 0.43981 * 6 4 3 8 8 C 1.47262 * 126.93958 * 179.82364 * 7 6 4 9 9 O 1.21628 * 119.99380 * 187.72846 * 8 7 6 10 10 N 1.34770 * 120.00352 * 7.73840 * 8 7 6 11 11 C 1.48388 * 127.17346 * 177.71487 * 10 8 7 12 12 C 1.54937 * 103.37399 * 219.23210 * 11 10 8 13 13 H 1.09000 * 110.89338 * 204.31596 * 12 11 10 14 14 N 1.46506 * 110.73768 * 81.05963 * 12 11 10 15 15 C 1.36940 * 119.99575 * 91.58565 * 14 12 11 16 16 H 1.07993 * 119.99903 * 359.97438 * 15 14 12 17 17 C 1.38814 * 119.99658 * 180.02562 * 15 14 12 18 18 N 1.31620 * 119.99904 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 119.99961 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.46761 * 359.97438 * 19 17 15 21 21 H 1.48495 * 109.47231 * 119.99727 * 19 17 15 22 22 H 1.48495 * 109.47160 * 240.00100 * 19 17 15 23 23 C 1.54622 * 102.83868 * 322.72558 * 12 11 10 24 24 C 1.53001 * 110.32325 * 262.95739 * 23 12 11 25 25 C 1.52998 * 110.41043 * 140.78497 * 23 12 11 26 26 C 1.47482 * 127.03301 * 357.91249 * 10 8 7 27 27 C 1.34658 * 124.84634 * 90.00828 * 3 2 1 28 28 C 1.50697 * 125.80465 * 359.94898 * 27 3 2 29 29 H 1.08992 * 109.47864 * 59.99801 * 1 2 3 30 30 H 1.09000 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46927 * 299.99139 * 1 2 3 32 32 H 1.08996 * 109.46757 * 240.00372 * 2 1 3 33 33 H 1.09001 * 109.47326 * 120.00012 * 2 1 3 34 34 H 1.09005 * 109.47242 * 89.99608 * 5 4 3 35 35 H 1.08992 * 109.46935 * 209.99816 * 5 4 3 36 36 H 1.09002 * 109.46987 * 330.00343 * 5 4 3 37 37 H 1.08000 * 126.83310 * 180.26541 * 6 4 3 38 38 H 1.09005 * 110.51808 * 100.79162 * 11 10 8 39 39 H 1.08994 * 110.83338 * 337.82540 * 11 10 8 40 40 H 0.96993 * 120.00301 * 271.57853 * 14 12 11 41 41 H 0.97003 * 119.99635 * 180.02562 * 18 17 15 42 42 H 1.09001 * 109.46635 * 177.08048 * 24 23 12 43 43 H 1.09000 * 109.46928 * 297.07203 * 24 23 12 44 44 H 1.08995 * 109.47525 * 57.07586 * 24 23 12 45 45 H 1.09002 * 109.47490 * 302.86939 * 25 23 12 46 46 H 1.09005 * 109.47551 * 62.87630 * 25 23 12 47 47 H 1.09006 * 109.46537 * 182.87277 * 25 23 12 48 48 H 1.09004 * 109.91374 * 35.16328 * 26 10 8 49 49 H 1.08997 * 109.91828 * 274.07355 * 26 10 8 50 50 H 1.09000 * 109.47193 * 270.00099 * 28 27 3 51 51 H 1.08998 * 109.47056 * 30.00920 * 28 27 3 52 52 H 1.09002 * 109.47060 * 150.00243 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2786 2.1163 -1.1197 5 6 2.1104 1.6402 -2.5396 6 6 2.7037 3.3372 -0.7490 7 6 2.7124 3.3432 0.7178 8 6 3.1068 4.4577 1.5959 9 8 3.2009 4.2825 2.7958 10 7 3.3631 5.6718 1.0700 11 6 3.7239 6.9093 1.8051 12 6 2.9512 8.0161 1.0445 13 1 3.4283 8.9867 1.1804 14 7 1.5522 8.0627 1.4768 15 6 1.1798 8.8899 2.5025 16 1 1.9174 9.5076 2.9931 17 6 -0.1457 8.9337 2.9125 18 7 -1.0446 8.1805 2.3150 19 14 -0.6537 10.0616 4.3122 20 1 0.5357 10.7970 4.8118 21 1 -1.6668 11.0312 3.8239 22 1 -1.2336 9.2526 5.4142 23 6 3.0542 7.5568 -0.4284 24 6 4.2036 8.2812 -1.1318 25 6 1.7363 7.8154 -1.1613 26 6 3.3388 6.0450 -0.3566 27 6 2.2748 2.1066 1.1051 28 6 2.1076 1.6362 2.5270 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.1010 1.8683 -2.8821 35 1 2.8340 2.1445 -3.1800 36 1 2.2743 0.5635 -2.5836 37 1 2.9855 4.1503 -1.4015 38 1 4.7984 7.0852 1.7529 39 1 3.3945 6.8539 2.8426 40 1 0.8897 7.5077 1.0364 41 1 -1.9709 8.2113 2.6012 42 1 4.2966 7.9099 -2.1524 43 1 4.0001 9.3519 -1.1519 44 1 5.1329 8.0981 -0.5924 45 1 0.9256 7.3037 -0.6427 46 1 1.5358 8.8867 -1.1814 47 1 1.8087 7.4401 -2.1821 48 1 2.5512 5.4943 -0.8711 49 1 4.3037 5.8269 -0.8141 50 1 1.0986 1.8659 2.8694 51 1 2.2714 0.5597 2.5751 52 1 2.8319 2.1427 3.1649 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996014875.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:01:14 Heat of formation + Delta-G solvation = 9.457845 kcal Electronic energy + Delta-G solvation = -30540.558988 eV Core-core repulsion = 26733.493044 eV Total energy + Delta-G solvation = -3807.065944 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.49165 -40.93067 -38.99673 -35.79870 -35.02074 -34.34529 -33.57054 -32.66367 -30.73895 -30.07955 -29.13703 -27.97042 -27.41639 -26.04362 -25.30162 -24.52291 -23.23186 -21.96335 -20.91425 -19.95130 -19.34609 -18.66321 -17.89018 -17.18594 -16.78999 -16.51365 -16.24344 -16.13598 -15.77436 -15.37460 -15.17211 -14.87064 -14.49470 -14.34378 -14.13676 -14.08803 -14.01451 -13.76176 -13.69348 -13.60839 -13.27233 -13.17855 -13.11549 -12.92147 -12.86468 -12.74966 -12.68706 -12.52678 -12.43128 -12.21851 -12.11153 -12.08424 -12.03462 -11.74650 -11.35528 -11.21573 -10.96963 -10.73988 -9.69445 -9.47120 -8.96140 -8.81711 -7.94136 -5.20710 0.78121 1.43122 1.45501 1.47581 1.54488 1.83339 2.29508 2.54928 2.63284 3.36853 3.60371 3.74085 3.77930 3.85014 3.88876 3.94711 4.09302 4.13346 4.16659 4.31588 4.38541 4.39743 4.49902 4.52415 4.59531 4.62448 4.67554 4.70715 4.75520 4.82445 4.86366 4.88881 4.92496 4.95061 4.96740 5.03071 5.04943 5.13968 5.16254 5.21201 5.23961 5.31937 5.38265 5.46362 5.50372 5.52671 5.70414 5.86588 6.17939 6.28248 6.42911 6.80334 7.34739 7.37975 8.12666 8.34758 9.29770 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011460 B = 0.003864 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2442.726926 B = 7244.360696 C = 8247.221483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.087 3.913 3 N -0.431 5.431 4 C 0.016 3.984 5 C -0.078 4.078 6 C -0.193 4.193 7 C -0.260 4.260 8 C 0.592 3.408 9 O -0.606 6.606 10 N -0.606 5.606 11 C 0.084 3.916 12 C 0.166 3.834 13 H 0.075 0.925 14 N -0.721 5.721 15 C -0.237 4.237 16 H 0.076 0.924 17 C -0.075 4.075 18 N -0.969 5.969 19 Si 0.968 3.032 20 H -0.265 1.265 21 H -0.290 1.290 22 H -0.301 1.301 23 C -0.081 4.081 24 C -0.125 4.125 25 C -0.117 4.117 26 C 0.106 3.894 27 C 0.089 3.911 28 C -0.088 4.088 29 H 0.058 0.942 30 H 0.101 0.899 31 H 0.041 0.959 32 H 0.120 0.880 33 H 0.102 0.898 34 H 0.078 0.922 35 H 0.094 0.906 36 H 0.083 0.917 37 H 0.166 0.834 38 H 0.084 0.916 39 H 0.037 0.963 40 H 0.375 0.625 41 H 0.248 0.752 42 H 0.082 0.918 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.026 0.974 46 H 0.046 0.954 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.091 0.909 50 H 0.065 0.935 51 H 0.095 0.905 52 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.563 -17.020 -15.218 24.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.108 5.108 4 C -0.092 4.092 5 C -0.135 4.135 6 C -0.216 4.216 7 C -0.270 4.270 8 C 0.385 3.615 9 O -0.490 6.490 10 N -0.337 5.337 11 C -0.042 4.042 12 C 0.055 3.945 13 H 0.093 0.907 14 N -0.361 5.361 15 C -0.369 4.369 16 H 0.094 0.906 17 C -0.267 4.267 18 N -0.621 5.621 19 Si 0.798 3.202 20 H -0.189 1.189 21 H -0.217 1.217 22 H -0.229 1.229 23 C -0.083 4.083 24 C -0.182 4.182 25 C -0.175 4.175 26 C -0.016 4.016 27 C -0.028 4.028 28 C -0.145 4.145 29 H 0.077 0.923 30 H 0.120 0.880 31 H 0.060 0.940 32 H 0.138 0.862 33 H 0.120 0.880 34 H 0.096 0.904 35 H 0.113 0.887 36 H 0.102 0.898 37 H 0.183 0.817 38 H 0.102 0.898 39 H 0.055 0.945 40 H 0.209 0.791 41 H 0.057 0.943 42 H 0.101 0.899 43 H 0.077 0.923 44 H 0.083 0.917 45 H 0.045 0.955 46 H 0.065 0.935 47 H 0.097 0.903 48 H 0.104 0.896 49 H 0.109 0.891 50 H 0.084 0.916 51 H 0.113 0.887 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 9.487 -17.392 -14.480 24.539 hybrid contribution -1.053 0.737 1.510 1.983 sum 8.434 -16.655 -12.970 22.732 Atomic orbital electron populations 1.22141 0.93918 1.04219 1.02155 1.22227 0.95898 0.78831 1.06343 1.43886 1.49804 1.12976 1.04138 1.20841 1.06232 0.91921 0.90224 1.20440 1.03732 1.02427 0.86892 1.22441 1.08990 0.98224 0.91956 1.20128 1.17682 0.94557 0.94661 1.17551 0.75738 0.81746 0.86448 1.90643 1.57154 1.83857 1.17336 1.48467 1.67737 1.08065 1.09391 1.23315 0.99046 0.85315 0.96538 1.21612 0.84959 0.95513 0.92373 0.90704 1.42667 1.04460 1.49194 1.39756 1.19709 0.92839 1.15401 1.08926 0.90625 1.25490 0.96365 1.02199 1.02657 1.69841 1.01641 1.44915 1.45654 0.85140 0.78070 0.78126 0.78883 1.18899 1.21677 1.22924 1.21788 0.97506 0.94247 0.94752 1.21776 0.95722 0.99983 1.00725 1.21589 0.95305 1.01180 0.99386 1.22767 1.02658 0.94876 0.81256 1.20318 1.01151 0.91145 0.90235 1.20464 1.02862 1.02122 0.89037 0.92276 0.87995 0.93959 0.86193 0.87989 0.90366 0.88745 0.89783 0.81695 0.89837 0.94470 0.79055 0.94330 0.89923 0.92276 0.91672 0.95520 0.93472 0.90290 0.89638 0.89060 0.91631 0.88654 0.90871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 10.24 71.98 0.74 -1.48 16 2 C 0.09 1.15 6.30 86.38 0.54 1.69 16 3 N -0.43 -9.89 2.68 -495.48 -1.33 -11.22 16 4 C 0.02 0.36 6.85 40.98 0.28 0.64 16 5 C -0.08 -0.96 10.06 71.24 0.72 -0.24 16 6 C -0.19 -5.43 9.24 23.62 0.22 -5.22 16 7 C -0.26 -9.49 6.21 -19.04 -0.12 -9.61 16 8 C 0.59 26.13 7.88 86.62 0.68 26.81 16 9 O -0.61 -31.09 15.04 -4.12 -0.06 -31.15 16 10 N -0.61 -24.03 3.30 -812.77 -2.68 -26.71 16 11 C 0.08 3.43 6.76 86.68 0.59 4.02 16 12 C 0.17 6.71 3.15 46.20 0.15 6.85 16 13 H 0.08 2.92 7.80 -2.39 -0.02 2.90 16 14 N -0.72 -37.77 4.60 -317.19 -1.46 -39.23 16 15 C -0.24 -13.71 9.96 84.03 0.84 -12.87 16 16 H 0.08 4.20 7.83 -2.91 -0.02 4.18 16 17 C -0.08 -4.52 5.50 84.86 0.47 -4.05 16 18 N -0.97 -62.33 13.06 21.65 0.28 -62.04 16 19 Si 0.97 48.68 29.55 68.60 2.03 50.70 16 20 H -0.26 -12.46 7.11 99.48 0.71 -11.75 16 21 H -0.29 -14.30 7.11 99.48 0.71 -13.59 16 22 H -0.30 -15.47 7.11 99.48 0.71 -14.77 16 23 C -0.08 -2.49 0.94 -51.29 -0.05 -2.54 16 24 C -0.12 -2.72 8.21 71.98 0.59 -2.13 16 25 C -0.12 -3.85 7.68 71.98 0.55 -3.30 16 26 C 0.11 3.19 4.81 86.53 0.42 3.61 16 27 C 0.09 2.80 6.89 41.78 0.29 3.09 16 28 C -0.09 -2.56 9.61 71.24 0.68 -1.87 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.84 16 30 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.04 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.12 0.90 6.90 -2.39 -0.02 0.88 16 33 H 0.10 1.12 6.88 -2.39 -0.02 1.11 16 34 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.08 0.67 6.94 -2.39 -0.02 0.65 16 37 H 0.17 3.99 5.15 -2.91 -0.01 3.97 16 38 H 0.08 2.87 8.14 -2.38 -0.02 2.85 16 39 H 0.04 1.86 7.89 -2.39 -0.02 1.84 16 40 H 0.38 21.42 5.65 -92.71 -0.52 20.90 16 41 H 0.25 15.48 8.31 -92.71 -0.77 14.70 16 42 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 43 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.03 1.09 6.13 -2.39 -0.01 1.07 16 46 H 0.05 1.66 8.14 -2.38 -0.02 1.64 16 47 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 48 H 0.09 2.55 4.62 -2.38 -0.01 2.54 16 49 H 0.09 2.17 7.67 -2.39 -0.02 2.15 16 50 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 51 H 0.09 1.94 6.92 -2.39 -0.02 1.92 16 52 H 0.07 2.59 6.34 -2.39 -0.02 2.58 16 Total: -1.00 -83.22 402.58 4.75 -78.48 By element: Atomic # 1 Polarization: 37.38 SS G_CDS: 0.39 Total: 37.77 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: 7.58 Total: 3.40 kcal Atomic # 7 Polarization: -134.01 SS G_CDS: -5.19 Total: -139.20 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -0.06 Total: -31.15 kcal Atomic # 14 Polarization: 48.68 SS G_CDS: 2.03 Total: 50.70 kcal Total: -83.22 4.75 -78.48 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996014875.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.933 kcal (2) G-P(sol) polarization free energy of solvation -83.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.711 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds