Wall clock time and date at job start Tue Mar 31 2020 18:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46671 * 2 1 4 4 C 1.36449 * 124.85310 * 265.01703 * 3 2 1 5 5 C 1.34483 * 108.85465 * 180.02562 * 4 3 2 6 6 C 1.46683 * 106.33665 * 0.02562 * 5 4 3 7 7 C 1.47266 * 126.94134 * 180.02562 * 6 5 4 8 8 O 1.21625 * 120.00045 * 179.97438 * 7 6 5 9 9 N 1.34772 * 119.99916 * 359.97152 * 7 6 5 10 10 C 1.46506 * 119.99973 * 180.02562 * 9 7 6 11 11 H 1.08998 * 109.46685 * 324.99989 * 10 9 7 12 12 C 1.52996 * 109.47277 * 84.99856 * 10 9 7 13 13 C 1.53001 * 109.46922 * 205.00239 * 10 9 7 14 14 C 1.53040 * 109.45976 * 300.06461 * 13 10 9 15 15 C 1.53196 * 109.31023 * 178.61626 * 14 13 10 16 16 N 1.46925 * 108.77634 * 54.63713 * 15 14 13 17 17 C 1.36931 * 120.63602 * 126.41225 * 16 15 14 18 18 H 1.07995 * 120.00790 * 207.65963 * 17 16 15 19 19 C 1.38819 * 119.99547 * 27.65271 * 17 16 15 20 20 N 1.31619 * 119.99909 * 17.38534 * 19 17 16 21 21 Si 1.86796 * 119.99872 * 197.37686 * 19 17 16 22 22 H 1.48501 * 109.47225 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46986 * 120.00676 * 21 19 17 24 24 H 1.48500 * 109.47698 * 240.00574 * 21 19 17 25 25 C 1.46933 * 118.73681 * 306.38853 * 16 15 14 26 26 C 1.53041 * 109.45937 * 179.97438 * 13 10 9 27 27 C 1.34664 * 124.85187 * 84.72228 * 3 2 1 28 28 C 1.50695 * 125.79934 * 359.96064 * 27 3 2 29 29 H 1.09001 * 109.47498 * 300.00198 * 1 2 3 30 30 H 1.09002 * 109.47183 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46982 * 60.00147 * 1 2 3 32 32 H 1.08995 * 109.46705 * 119.99726 * 2 1 3 33 33 H 1.08999 * 109.47098 * 240.00153 * 2 1 3 34 34 H 1.08001 * 125.56885 * 0.02562 * 4 3 2 35 35 H 1.08010 * 126.82868 * 179.97438 * 5 4 3 36 36 H 0.96998 * 120.00515 * 0.02562 * 9 7 6 37 37 H 1.09001 * 109.46972 * 179.97438 * 12 10 9 38 38 H 1.08991 * 109.47183 * 300.00509 * 12 10 9 39 39 H 1.09005 * 109.46950 * 60.00152 * 12 10 9 40 40 H 1.09004 * 109.46227 * 60.02764 * 13 10 9 41 41 H 1.08995 * 109.49759 * 298.56461 * 14 13 10 42 42 H 1.08999 * 109.49704 * 58.66642 * 14 13 10 43 43 H 1.09002 * 109.58680 * 294.84827 * 15 14 13 44 44 H 1.08997 * 109.58427 * 174.42275 * 15 14 13 45 45 H 0.97003 * 119.99743 * 179.97438 * 20 19 17 46 46 H 1.09000 * 109.58673 * 293.81949 * 25 16 15 47 47 H 1.09007 * 109.58383 * 173.39391 * 25 16 15 48 48 H 1.09002 * 109.49720 * 301.33865 * 26 13 10 49 49 H 1.08999 * 109.49879 * 61.43293 * 26 13 10 50 50 H 1.09004 * 109.47744 * 89.99718 * 28 27 3 51 51 H 1.09003 * 109.47197 * 210.00085 * 28 27 3 52 52 H 1.09002 * 109.47179 * 329.99748 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3698 2.0840 -1.1155 5 6 2.7708 3.3134 -0.7462 6 6 2.6545 3.3637 0.7152 7 6 2.9770 4.5036 1.5900 8 8 2.8318 4.4066 2.7936 9 7 3.4330 5.6543 1.0568 10 6 3.7543 6.7882 1.9271 11 1 3.0580 6.8114 2.7654 12 6 5.1825 6.6377 2.4545 13 6 3.6387 8.0902 1.1319 14 6 4.6151 8.0566 -0.0460 15 6 4.4721 9.3468 -0.8596 16 7 4.6504 10.4951 0.0395 17 6 5.5690 11.4693 -0.2468 18 1 6.0213 12.0371 0.5529 19 6 5.9192 11.7272 -1.5651 20 7 5.1505 11.3023 -2.5454 21 14 7.4811 12.6775 -1.9478 22 1 8.1635 13.0397 -0.6796 23 1 8.3840 11.8345 -2.7721 24 1 7.1380 13.9135 -2.6962 25 6 3.8239 10.5784 1.2514 26 6 3.9737 9.2746 2.0415 27 6 2.1789 2.1407 1.1004 28 6 1.8884 1.7138 2.5161 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3633 0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 2.3322 1.7135 -2.1293 35 1 3.1116 4.1058 -1.3963 36 1 3.5485 5.7319 0.0968 37 1 5.4217 7.4816 3.1017 38 1 5.2648 5.7102 3.0209 39 1 5.8788 6.6145 1.6161 40 1 2.6209 8.1975 0.7568 41 1 5.6352 7.9744 0.3293 42 1 4.3902 7.1995 -0.6806 43 1 3.4805 9.3863 -1.3106 44 1 5.2322 9.3725 -1.6404 45 1 5.3949 11.4828 -3.4666 46 1 2.7795 10.7185 0.9726 47 1 4.1565 11.4169 1.8635 48 1 3.2924 9.2840 2.8923 49 1 4.9997 9.1811 2.3974 50 1 2.7829 1.2692 2.9525 51 1 1.5907 2.5823 3.1037 52 1 1.0814 0.9810 2.5164 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997724074.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:07:57 Heat of formation + Delta-G solvation = -1.579677 kcal Electronic energy + Delta-G solvation = -29300.649282 eV Core-core repulsion = 25493.104716 eV Total energy + Delta-G solvation = -3807.544566 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -42.33115 -40.69966 -39.24670 -36.71379 -34.99986 -34.41290 -32.64117 -32.48369 -31.59511 -30.60193 -29.76828 -27.36570 -27.07142 -25.30307 -24.38194 -23.90721 -23.05097 -22.02166 -20.87965 -20.26487 -19.73032 -18.59268 -18.33930 -16.98743 -16.85894 -16.71336 -16.28338 -15.78673 -15.61261 -15.50781 -15.31171 -15.20956 -14.77736 -14.58320 -14.26536 -14.09363 -14.05738 -13.95701 -13.75963 -13.63577 -13.48967 -13.10811 -13.00971 -12.94149 -12.85478 -12.69190 -12.55888 -12.42520 -12.37979 -12.13648 -12.10928 -11.89647 -11.68122 -11.50563 -11.16723 -10.95689 -10.74379 -10.50225 -10.01736 -9.49711 -9.06984 -8.64647 -7.84677 -5.28920 0.79269 1.46745 1.48902 1.53805 1.59300 1.88921 2.50653 2.53655 2.63788 3.29258 3.72614 3.80957 3.83673 3.85558 3.93416 4.04855 4.08985 4.13316 4.21374 4.36795 4.41494 4.43649 4.47240 4.57772 4.61623 4.66935 4.70801 4.74795 4.82728 4.83724 4.89451 4.97047 4.98424 5.01601 5.07075 5.08272 5.19440 5.25210 5.26417 5.30243 5.31833 5.36831 5.45763 5.58566 5.66551 5.72043 5.83559 5.83706 6.15107 6.40533 6.42419 6.75219 7.18336 7.42723 7.90371 8.41899 9.21608 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020190 B = 0.002396 C = 0.002235 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.477193 B =11681.431288 C =12523.975791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 N -0.437 5.437 4 C -0.008 4.008 5 C -0.188 4.188 6 C -0.272 4.272 7 C 0.586 3.414 8 O -0.590 6.590 9 N -0.714 5.714 10 C 0.159 3.841 11 H 0.075 0.925 12 C -0.155 4.155 13 C -0.074 4.074 14 C -0.119 4.119 15 C 0.177 3.823 16 N -0.610 5.610 17 C -0.258 4.258 18 H 0.065 0.935 19 C -0.053 4.053 20 N -0.935 5.935 21 Si 0.965 3.035 22 H -0.268 1.268 23 H -0.290 1.290 24 H -0.293 1.293 25 C 0.141 3.859 26 C -0.115 4.115 27 C 0.098 3.902 28 C -0.088 4.088 29 H 0.051 0.949 30 H 0.097 0.903 31 H 0.057 0.943 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.198 0.802 35 H 0.150 0.850 36 H 0.405 0.595 37 H 0.073 0.927 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.065 0.935 43 H -0.007 1.007 44 H 0.053 0.947 45 H 0.249 0.751 46 H 0.010 0.990 47 H 0.054 0.946 48 H 0.078 0.922 49 H 0.065 0.935 50 H 0.079 0.921 51 H 0.076 0.924 52 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.890 -26.240 5.111 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.031 4.031 3 N -0.113 5.113 4 C -0.135 4.135 5 C -0.211 4.211 6 C -0.282 4.282 7 C 0.377 3.623 8 O -0.473 6.473 9 N -0.365 5.365 10 C 0.054 3.946 11 H 0.093 0.907 12 C -0.213 4.213 13 C -0.093 4.093 14 C -0.158 4.158 15 C 0.052 3.948 16 N -0.334 5.334 17 C -0.388 4.388 18 H 0.083 0.917 19 C -0.248 4.248 20 N -0.581 5.581 21 Si 0.793 3.207 22 H -0.192 1.192 23 H -0.216 1.216 24 H -0.221 1.221 25 C 0.015 3.985 26 C -0.155 4.155 27 C -0.020 4.020 28 C -0.146 4.146 29 H 0.070 0.930 30 H 0.116 0.884 31 H 0.076 0.924 32 H 0.119 0.881 33 H 0.135 0.865 34 H 0.215 0.785 35 H 0.168 0.832 36 H 0.242 0.758 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.011 0.989 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.028 0.972 47 H 0.072 0.928 48 H 0.096 0.904 49 H 0.084 0.916 50 H 0.097 0.903 51 H 0.094 0.906 52 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.082 -26.603 5.763 28.394 hybrid contribution 0.747 1.132 -1.151 1.779 sum -7.335 -25.471 4.612 26.904 Atomic orbital electron populations 1.22173 0.93741 1.04213 1.02438 1.22230 0.96007 0.78556 1.06317 1.44015 1.49370 1.12865 1.05052 1.22173 1.06207 0.92568 0.92506 1.22237 1.07677 0.98681 0.92529 1.20246 1.18188 0.95314 0.94473 1.17716 0.75416 0.82354 0.86840 1.90666 1.56607 1.83734 1.16275 1.45931 1.66621 1.12698 1.11225 1.20828 0.96756 0.84425 0.92575 0.90718 1.22155 0.96136 1.01713 1.01262 1.21164 0.99128 0.93337 0.95695 1.22056 0.99137 0.97765 0.96882 1.20584 0.97383 0.84955 0.91902 1.44335 1.42599 1.22485 1.23949 1.19544 1.14937 1.13063 0.91300 0.91692 1.25766 1.01764 1.01100 0.96162 1.70197 1.37656 1.51615 0.98670 0.85245 0.79948 0.77641 0.77853 1.19196 1.21642 1.22058 1.21049 0.92905 0.96425 0.88091 1.21941 1.01916 0.94124 0.97491 1.20479 1.00446 0.90562 0.90552 1.20507 1.02621 1.02790 0.88636 0.92978 0.88410 0.92423 0.88053 0.86549 0.78484 0.83186 0.75848 0.90779 0.93471 0.92333 0.92004 0.92351 0.91678 0.98875 0.92819 0.94188 0.97161 0.92767 0.90380 0.91613 0.90268 0.90565 0.89450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.11 10.24 71.98 0.74 -0.37 16 2 C 0.09 0.64 6.21 86.38 0.54 1.18 16 3 N -0.44 -6.87 2.69 -509.92 -1.37 -8.24 16 4 C -0.01 -0.13 11.33 83.12 0.94 0.81 16 5 C -0.19 -4.06 10.56 23.62 0.25 -3.82 16 6 C -0.27 -7.24 6.29 -19.04 -0.12 -7.36 16 7 C 0.59 18.28 7.77 86.62 0.67 18.95 16 8 O -0.59 -21.28 14.48 -4.11 -0.06 -21.34 16 9 N -0.71 -20.59 4.99 -445.95 -2.23 -22.82 16 10 C 0.16 4.73 2.40 44.99 0.11 4.84 16 11 H 0.07 2.37 7.58 -2.39 -0.02 2.35 16 12 C -0.15 -4.45 8.78 71.98 0.63 -3.81 16 13 C -0.07 -2.41 2.14 -10.77 -0.02 -2.43 16 14 C -0.12 -4.35 4.82 30.67 0.15 -4.20 16 15 C 0.18 8.54 5.31 86.36 0.46 9.00 16 16 N -0.61 -30.88 3.00 -699.08 -2.09 -32.98 16 17 C -0.26 -14.34 9.59 84.04 0.81 -13.54 16 18 H 0.07 3.54 7.89 -2.91 -0.02 3.51 16 19 C -0.05 -2.98 4.91 84.86 0.42 -2.56 16 20 N -0.93 -55.69 11.19 21.65 0.24 -55.44 16 21 Si 0.96 45.31 29.59 68.60 2.03 47.34 16 22 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 23 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 24 H -0.29 -13.80 7.11 99.48 0.71 -13.09 16 25 C 0.14 5.90 6.51 86.36 0.56 6.46 16 26 C -0.12 -3.86 4.97 30.67 0.15 -3.71 16 27 C 0.10 2.15 6.89 41.78 0.29 2.44 16 28 C -0.09 -1.66 9.30 71.23 0.66 -1.00 16 29 H 0.05 0.49 7.48 -2.39 -0.02 0.47 16 30 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 31 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 32 H 0.10 0.53 7.75 -2.39 -0.02 0.51 16 33 H 0.12 0.34 8.11 -2.39 -0.02 0.32 16 34 H 0.20 1.77 8.06 -2.91 -0.02 1.74 16 35 H 0.15 2.93 7.70 -2.91 -0.02 2.90 16 36 H 0.40 10.70 5.97 -92.71 -0.55 10.15 16 37 H 0.07 2.02 6.46 -2.39 -0.02 2.00 16 38 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.71 6.46 -2.38 -0.02 1.69 16 40 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.06 2.18 6.51 -2.39 -0.02 2.17 16 42 H 0.06 2.07 6.46 -2.39 -0.02 2.05 16 43 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16 44 H 0.05 2.93 6.04 -2.39 -0.01 2.92 16 45 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 46 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 47 H 0.05 2.22 7.93 -2.38 -0.02 2.20 16 48 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 49 H 0.07 2.21 6.51 -2.39 -0.02 2.19 16 50 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 51 H 0.08 1.86 6.48 -2.39 -0.02 1.84 16 52 H 0.09 1.10 7.03 -2.39 -0.02 1.08 16 Total: -1.00 -72.47 399.12 4.11 -68.36 By element: Atomic # 1 Polarization: 23.90 SS G_CDS: 0.36 Total: 24.25 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 7.23 Total: 0.87 kcal Atomic # 7 Polarization: -114.04 SS G_CDS: -5.45 Total: -119.49 kcal Atomic # 8 Polarization: -21.28 SS G_CDS: -0.06 Total: -21.34 kcal Atomic # 14 Polarization: 45.31 SS G_CDS: 2.03 Total: 47.34 kcal Total: -72.47 4.11 -68.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997724074.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.782 kcal (2) G-P(sol) polarization free energy of solvation -72.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.686 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds