Wall clock time and date at job start Tue Mar 31 2020 18:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.34777 * 120.00439 * 83.73486 * 3 2 1 5 5 O 1.21687 * 120.00231 * 184.12865 * 4 3 2 6 6 C 1.46678 * 119.99762 * 4.12564 * 4 3 2 7 7 C 1.37870 * 126.23420 * 337.66988 * 6 4 3 8 8 C 1.39841 * 107.08773 * 179.79752 * 7 6 4 9 9 C 1.35454 * 107.86217 * 0.38478 * 8 7 6 10 10 C 1.50697 * 125.56206 * 179.87697 * 9 8 7 11 11 N 1.35535 * 108.87128 * 359.61272 * 9 8 7 12 12 C 1.46499 * 125.68019 * 180.28094 * 11 9 8 13 13 C 1.46503 * 120.00028 * 263.74000 * 3 2 1 14 14 H 1.08999 * 109.20333 * 0.63467 * 13 3 2 15 15 C 1.50129 * 109.21024 * 119.99353 * 13 3 2 16 16 C 1.52526 * 105.41623 * 218.02725 * 15 13 3 17 17 C 1.46239 * 114.27859 * 270.59756 * 16 15 13 18 18 N 1.50167 * 107.53425 * 58.40908 * 17 16 15 19 19 C 1.36938 * 120.54162 * 109.61052 * 18 17 16 20 20 H 1.07997 * 120.00081 * 146.87191 * 19 18 17 21 21 C 1.38803 * 119.99665 * 326.86826 * 19 18 17 22 22 N 1.31624 * 120.00333 * 359.92323 * 21 19 18 23 23 Si 1.86803 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47196 * 120.00360 * 23 21 19 26 26 H 1.48505 * 109.47183 * 239.99935 * 23 21 19 27 27 C 1.43443 * 118.92495 * 289.58905 * 18 17 16 28 28 C 1.54840 * 109.20914 * 241.32269 * 13 3 2 29 29 H 1.09001 * 109.47192 * 307.93081 * 1 2 3 30 30 H 1.08998 * 109.46870 * 67.93729 * 1 2 3 31 31 H 1.09001 * 109.46904 * 187.93128 * 1 2 3 32 32 H 1.09000 * 109.47507 * 239.99353 * 2 1 3 33 33 H 1.09004 * 109.46743 * 119.99608 * 2 1 3 34 34 H 1.08004 * 126.45897 * 0.03426 * 7 6 4 35 35 H 1.07997 * 126.07073 * 180.27211 * 8 7 6 36 36 H 1.09001 * 109.47033 * 269.68847 * 10 9 8 37 37 H 1.09006 * 109.46574 * 149.69146 * 10 9 8 38 38 H 1.08995 * 109.47378 * 29.69131 * 10 9 8 39 39 H 1.09001 * 109.47007 * 85.83453 * 12 11 9 40 40 H 1.08996 * 109.47444 * 205.83950 * 12 11 9 41 41 H 1.08996 * 109.47119 * 325.84225 * 12 11 9 42 42 H 1.09000 * 110.25071 * 337.00098 * 15 13 3 43 43 H 1.09004 * 110.24487 * 99.05364 * 15 13 3 44 44 H 1.08996 * 108.52317 * 31.84169 * 16 15 13 45 45 H 1.08996 * 108.51863 * 149.35746 * 16 15 13 46 46 H 1.08998 * 109.84774 * 177.91320 * 17 16 15 47 47 H 1.09004 * 109.84372 * 298.90292 * 17 16 15 48 48 H 0.96996 * 120.00255 * 179.97438 * 22 21 19 49 49 H 1.08994 * 108.15974 * 213.28726 * 27 18 17 50 50 H 1.09004 * 108.15502 * 330.06504 * 27 18 17 51 51 H 1.09008 * 109.35541 * 320.99053 * 28 13 3 52 52 H 1.09000 * 109.36018 * 80.57921 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1230 2.0591 1.1602 5 8 2.4566 3.2293 1.1532 6 6 1.8346 1.3862 2.4312 7 6 1.0601 0.2579 2.5987 8 6 1.0575 -0.0396 3.9651 9 6 1.8066 0.8964 4.5955 10 6 2.0683 0.9565 6.0784 11 7 2.2872 1.7667 3.6743 12 6 3.1462 2.9198 3.9546 13 6 2.3930 2.0257 -1.2612 14 1 2.2298 1.3281 -2.0826 15 6 1.5368 3.2414 -1.4681 16 6 1.2388 3.2778 -2.9635 17 6 2.2221 4.0164 -3.7547 18 7 3.5600 3.3728 -3.5293 19 6 4.1658 2.6585 -4.5283 20 1 5.2425 2.6533 -4.6118 21 6 3.3959 1.9413 -5.4336 22 7 2.0837 1.9464 -5.3309 23 14 4.2221 0.9676 -6.7969 24 1 5.6953 1.1230 -6.6933 25 1 3.8659 -0.4681 -6.6657 26 1 3.7620 1.4731 -8.1152 27 6 4.1933 3.5185 -2.2506 28 6 3.8920 2.4103 -1.2111 29 1 -0.3633 0.6317 0.8106 30 1 -0.3633 0.3860 -0.9524 31 1 -0.3633 -1.0179 0.1418 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5542 -0.2945 1.8207 35 1 0.5472 -0.8675 4.4346 36 1 1.2990 1.5609 6.5589 37 1 3.0462 1.4039 6.2568 38 1 2.0492 -0.0518 6.4919 39 1 4.1882 2.6005 3.9740 40 1 3.0108 3.6714 3.1769 41 1 2.8787 3.3455 4.9217 42 1 0.6103 3.1513 -0.9009 43 1 2.0780 4.1392 -1.1692 44 1 1.1961 2.2533 -3.3331 45 1 0.2610 3.7363 -3.1106 46 1 1.9604 3.9654 -4.8116 47 1 2.2524 5.0565 -3.4299 48 1 1.5457 1.4455 -5.9637 49 1 5.2714 3.5532 -2.4074 50 1 3.8834 4.4729 -1.8248 51 1 4.1386 2.7740 -0.2135 52 1 4.4981 1.5321 -1.4334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997910930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:09 Heat of formation + Delta-G solvation = 64.522586 kcal Electronic energy + Delta-G solvation = -31114.426016 eV Core-core repulsion = 27309.747859 eV Total energy + Delta-G solvation = -3804.678157 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.58127 -39.57077 -37.21294 -35.89456 -33.42380 -32.59903 -31.69688 -31.45724 -30.82898 -29.37885 -26.95803 -26.43555 -25.83039 -23.94011 -23.27478 -23.03205 -21.37441 -20.25554 -19.72200 -19.17092 -18.35377 -16.87498 -16.64848 -15.97206 -15.50136 -15.33212 -15.00399 -14.54407 -14.52693 -13.99212 -13.74754 -13.66371 -13.33412 -13.17419 -13.08343 -13.04628 -12.84006 -12.56921 -12.42035 -12.13993 -12.06843 -11.94982 -11.73464 -11.69615 -11.37121 -11.17982 -11.07156 -11.01500 -10.89342 -10.46868 -10.32980 -9.98822 -9.87178 -9.64672 -9.51732 -9.31183 -9.12421 -8.68891 -8.36590 -8.21669 -7.94612 -6.50582 -5.74990 -3.27622 1.62039 2.63529 2.73804 3.36655 3.45078 3.46813 3.51017 3.55768 4.50877 4.62544 4.75867 4.78669 4.98202 5.09149 5.13412 5.29142 5.32332 5.38926 5.41697 5.51128 5.53442 5.53955 5.56637 5.67916 5.72873 5.82512 5.89026 5.91350 6.12002 6.14911 6.17591 6.26746 6.37284 6.45310 6.51433 6.55933 6.71867 6.78324 6.87619 6.93289 7.00920 7.04769 7.10037 7.13760 7.22726 7.31384 7.42596 7.73423 7.82103 7.83814 8.07970 8.53242 8.55155 9.26700 9.89353 10.47967 11.30336 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.003313 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.355574 B = 8450.688808 C = 8875.124741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 N -0.593 5.593 4 C 0.583 3.417 5 O -0.544 6.544 6 C -0.041 4.041 7 C -0.170 4.170 8 C -0.210 4.210 9 C 0.029 3.971 10 C -0.085 4.085 11 N -0.409 5.409 12 C 0.059 3.941 13 C 0.168 3.832 14 H 0.098 0.902 15 C -0.112 4.112 16 C -0.128 4.128 17 C 0.166 3.834 18 N -0.591 5.591 19 C -0.245 4.245 20 H 0.063 0.937 21 C 0.007 3.993 22 N -0.903 5.903 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.166 3.834 28 C -0.149 4.149 29 H 0.067 0.933 30 H 0.066 0.934 31 H 0.067 0.933 32 H 0.082 0.918 33 H 0.087 0.913 34 H 0.170 0.830 35 H 0.138 0.862 36 H 0.071 0.929 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.078 0.922 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.099 0.901 45 H 0.025 0.975 46 H 0.093 0.907 47 H 0.001 0.999 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.030 0.970 51 H 0.058 0.942 52 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.051 -4.022 19.177 19.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.035 4.035 3 N -0.324 5.324 4 C 0.372 3.628 5 O -0.423 6.423 6 C -0.155 4.155 7 C -0.195 4.195 8 C -0.234 4.234 9 C -0.087 4.087 10 C -0.142 4.142 11 N -0.083 5.083 12 C -0.082 4.082 13 C 0.067 3.933 14 H 0.116 0.884 15 C -0.150 4.150 16 C -0.167 4.167 17 C 0.043 3.957 18 N -0.313 5.313 19 C -0.375 4.375 20 H 0.081 0.919 21 C -0.190 4.190 22 N -0.548 5.548 23 Si 0.731 3.269 24 H -0.204 1.204 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.036 3.964 28 C -0.191 4.191 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.086 0.914 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.187 0.813 35 H 0.156 0.844 36 H 0.090 0.910 37 H 0.082 0.918 38 H 0.099 0.901 39 H 0.090 0.910 40 H 0.129 0.871 41 H 0.097 0.903 42 H 0.064 0.936 43 H 0.085 0.915 44 H 0.117 0.883 45 H 0.043 0.957 46 H 0.111 0.889 47 H 0.019 0.981 48 H 0.062 0.938 49 H 0.049 0.951 50 H 0.048 0.952 51 H 0.077 0.923 52 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -2.727 -3.151 19.046 19.496 hybrid contribution 0.282 -0.843 -0.602 1.073 sum -2.445 -3.994 18.443 19.028 Atomic orbital electron populations 1.22430 0.96109 1.02152 1.03307 1.22026 0.94351 0.83269 1.03809 1.48243 1.63558 1.13688 1.06908 1.16964 0.77742 0.85676 0.82426 1.90730 1.48857 1.15669 1.87089 1.20268 1.08312 1.00966 0.85951 1.22439 1.02542 0.96938 0.97548 1.20637 1.06644 1.02132 0.93977 1.20511 1.02322 0.93886 0.91960 1.20338 1.01829 1.03446 0.88612 1.43737 1.37363 1.21885 1.05324 1.22294 0.93771 0.88062 1.04088 1.21402 0.94765 0.95048 0.82081 0.88382 1.21340 0.97886 0.98081 0.97742 1.20989 0.97599 1.05461 0.92614 1.20175 0.84267 0.90298 1.01005 1.44148 1.20623 1.59503 1.07044 1.19235 0.91063 1.21121 1.06123 0.91925 1.25206 0.95591 0.97985 1.00265 1.69887 1.03187 1.44185 1.37579 0.86246 0.78926 0.79980 0.81784 1.20449 1.21709 1.21799 1.20305 0.95687 0.94257 0.86103 1.23215 0.94544 1.01029 1.00281 0.91467 0.91520 0.91402 0.89994 0.89464 0.81342 0.84420 0.91027 0.91845 0.90069 0.91046 0.87090 0.90284 0.93599 0.91509 0.88324 0.95650 0.88881 0.98136 0.93819 0.95139 0.95213 0.92340 0.93516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.18 8.41 37.16 0.31 -1.87 16 2 C 0.09 1.21 5.65 -4.04 -0.02 1.18 16 3 N -0.59 -10.01 2.31 -168.16 -0.39 -10.40 16 4 C 0.58 10.16 6.64 -12.85 -0.09 10.08 16 5 O -0.54 -10.70 12.05 5.20 0.06 -10.64 16 6 C -0.04 -0.63 6.56 -81.98 -0.54 -1.16 16 7 C -0.17 -2.20 7.55 -39.12 -0.30 -2.49 16 8 C -0.21 -2.42 10.71 -39.98 -0.43 -2.85 16 9 C 0.03 0.33 6.87 -81.95 -0.56 -0.23 16 10 C -0.08 -0.62 9.89 36.00 0.36 -0.27 16 11 N -0.41 -5.44 3.16 -115.62 -0.37 -5.80 16 12 C 0.06 0.66 10.43 59.85 0.62 1.28 16 13 C 0.17 3.31 2.30 -68.39 -0.16 3.15 16 14 H 0.10 2.17 6.38 -51.93 -0.33 1.84 16 15 C -0.11 -2.29 4.11 -28.40 -0.12 -2.41 16 16 C -0.13 -2.82 4.98 -30.19 -0.15 -2.97 16 17 C 0.17 3.97 5.23 -5.20 -0.03 3.95 16 18 N -0.59 -14.70 2.59 -175.08 -0.45 -15.15 16 19 C -0.25 -6.58 9.59 -15.06 -0.14 -6.72 16 20 H 0.06 1.69 7.83 -52.49 -0.41 1.28 16 21 C 0.01 0.19 5.27 -17.43 -0.09 0.10 16 22 N -0.90 -24.27 8.89 55.49 0.49 -23.78 16 23 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 3.70 5.18 -4.66 -0.02 3.67 16 28 C -0.15 -3.06 5.79 -24.76 -0.14 -3.20 16 29 H 0.07 0.84 6.32 -51.93 -0.33 0.51 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.07 0.63 8.11 -51.93 -0.42 0.21 16 32 H 0.08 1.13 7.79 -51.93 -0.40 0.72 16 33 H 0.09 1.08 5.22 -51.93 -0.27 0.81 16 34 H 0.17 1.92 3.21 -52.48 -0.17 1.76 16 35 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.06 0.42 7.74 -51.93 -0.40 0.01 16 38 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.11 1.49 5.97 -51.93 -0.31 1.18 16 41 H 0.08 0.65 7.79 -51.93 -0.40 0.25 16 42 H 0.05 0.92 7.86 -51.93 -0.41 0.51 16 43 H 0.07 1.45 5.95 -51.93 -0.31 1.15 16 44 H 0.10 2.42 5.13 -51.93 -0.27 2.15 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.09 2.46 6.17 -51.93 -0.32 2.14 16 47 H 0.00 0.01 8.12 -51.93 -0.42 -0.41 16 48 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 49 H 0.03 0.67 8.00 -51.93 -0.42 0.26 16 50 H 0.03 0.65 6.88 -51.93 -0.36 0.29 16 51 H 0.06 1.19 6.15 -51.92 -0.32 0.87 16 52 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 380.86 15.07 5.74 5.74 Total: -1.00 -29.79 380.86 -9.79 -39.59 By element: Atomic # 1 Polarization: 13.37 SS G_CDS: -8.36 Total: 5.01 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.50 Total: -0.75 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.71 Total: -55.13 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.06 Total: -10.64 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.79 -9.79 -39.59 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997910930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.110 kcal (2) G-P(sol) polarization free energy of solvation -29.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.794 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.523 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds