Wall clock time and date at job start Tue Mar 31 2020 18:31:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47295 * 2 1 4 4 C 1.34777 * 120.00439 * 83.73486 * 3 2 1 5 5 O 1.21687 * 120.00231 * 184.12865 * 4 3 2 6 6 C 1.46678 * 119.99762 * 4.12564 * 4 3 2 7 7 C 1.37870 * 126.23420 * 337.66988 * 6 4 3 8 8 C 1.39841 * 107.08773 * 179.79752 * 7 6 4 9 9 C 1.35454 * 107.86217 * 0.38478 * 8 7 6 10 10 C 1.50697 * 125.56206 * 179.87697 * 9 8 7 11 11 N 1.35535 * 108.87128 * 359.61272 * 9 8 7 12 12 C 1.46499 * 125.68019 * 180.28094 * 11 9 8 13 13 C 1.46503 * 120.00028 * 263.74000 * 3 2 1 14 14 H 1.08999 * 109.20333 * 0.63467 * 13 3 2 15 15 C 1.50129 * 109.21024 * 119.99353 * 13 3 2 16 16 C 1.52526 * 105.41623 * 218.02725 * 15 13 3 17 17 C 1.46239 * 114.27859 * 270.59756 * 16 15 13 18 18 N 1.50167 * 107.53425 * 58.40908 * 17 16 15 19 19 C 1.36938 * 120.54162 * 109.61052 * 18 17 16 20 20 H 1.07997 * 120.00081 * 146.87191 * 19 18 17 21 21 C 1.38803 * 119.99665 * 326.86826 * 19 18 17 22 22 N 1.31624 * 120.00333 * 359.92323 * 21 19 18 23 23 Si 1.86803 * 119.99944 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47071 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.47196 * 120.00360 * 23 21 19 26 26 H 1.48505 * 109.47183 * 239.99935 * 23 21 19 27 27 C 1.43443 * 118.92495 * 289.58905 * 18 17 16 28 28 C 1.54840 * 109.20914 * 241.32269 * 13 3 2 29 29 H 1.09001 * 109.47192 * 307.93081 * 1 2 3 30 30 H 1.08998 * 109.46870 * 67.93729 * 1 2 3 31 31 H 1.09001 * 109.46904 * 187.93128 * 1 2 3 32 32 H 1.09000 * 109.47507 * 239.99353 * 2 1 3 33 33 H 1.09004 * 109.46743 * 119.99608 * 2 1 3 34 34 H 1.08004 * 126.45897 * 0.03426 * 7 6 4 35 35 H 1.07997 * 126.07073 * 180.27211 * 8 7 6 36 36 H 1.09001 * 109.47033 * 269.68847 * 10 9 8 37 37 H 1.09006 * 109.46574 * 149.69146 * 10 9 8 38 38 H 1.08995 * 109.47378 * 29.69131 * 10 9 8 39 39 H 1.09001 * 109.47007 * 85.83453 * 12 11 9 40 40 H 1.08996 * 109.47444 * 205.83950 * 12 11 9 41 41 H 1.08996 * 109.47119 * 325.84225 * 12 11 9 42 42 H 1.09000 * 110.25071 * 337.00098 * 15 13 3 43 43 H 1.09004 * 110.24487 * 99.05364 * 15 13 3 44 44 H 1.08996 * 108.52317 * 31.84169 * 16 15 13 45 45 H 1.08996 * 108.51863 * 149.35746 * 16 15 13 46 46 H 1.08998 * 109.84774 * 177.91320 * 17 16 15 47 47 H 1.09004 * 109.84372 * 298.90292 * 17 16 15 48 48 H 0.96996 * 120.00255 * 179.97438 * 22 21 19 49 49 H 1.08994 * 108.15974 * 213.28726 * 27 18 17 50 50 H 1.09004 * 108.15502 * 330.06504 * 27 18 17 51 51 H 1.09008 * 109.35541 * 320.99053 * 28 13 3 52 52 H 1.09000 * 109.36018 * 80.57921 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1230 2.0591 1.1602 5 8 2.4566 3.2293 1.1532 6 6 1.8346 1.3862 2.4312 7 6 1.0601 0.2579 2.5987 8 6 1.0575 -0.0396 3.9651 9 6 1.8066 0.8964 4.5955 10 6 2.0683 0.9565 6.0784 11 7 2.2872 1.7667 3.6743 12 6 3.1462 2.9198 3.9546 13 6 2.3930 2.0257 -1.2612 14 1 2.2298 1.3281 -2.0826 15 6 1.5368 3.2414 -1.4681 16 6 1.2388 3.2778 -2.9635 17 6 2.2221 4.0164 -3.7547 18 7 3.5600 3.3728 -3.5293 19 6 4.1658 2.6585 -4.5283 20 1 5.2425 2.6533 -4.6118 21 6 3.3959 1.9413 -5.4336 22 7 2.0837 1.9464 -5.3309 23 14 4.2221 0.9676 -6.7969 24 1 5.6953 1.1230 -6.6933 25 1 3.8659 -0.4681 -6.6657 26 1 3.7620 1.4731 -8.1152 27 6 4.1933 3.5185 -2.2506 28 6 3.8920 2.4103 -1.2111 29 1 -0.3633 0.6317 0.8106 30 1 -0.3633 0.3860 -0.9524 31 1 -0.3633 -1.0179 0.1418 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 0.5542 -0.2945 1.8207 35 1 0.5472 -0.8675 4.4346 36 1 1.2990 1.5609 6.5589 37 1 3.0462 1.4039 6.2568 38 1 2.0492 -0.0518 6.4919 39 1 4.1882 2.6005 3.9740 40 1 3.0108 3.6714 3.1769 41 1 2.8787 3.3455 4.9217 42 1 0.6103 3.1513 -0.9009 43 1 2.0780 4.1392 -1.1692 44 1 1.1961 2.2533 -3.3331 45 1 0.2610 3.7363 -3.1106 46 1 1.9604 3.9654 -4.8116 47 1 2.2524 5.0565 -3.4299 48 1 1.5457 1.4455 -5.9637 49 1 5.2714 3.5532 -2.4074 50 1 3.8834 4.4729 -1.8248 51 1 4.1386 2.7740 -0.2135 52 1 4.4981 1.5321 -1.4334 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997910930.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:08 Heat of formation + Delta-G solvation = 50.280121 kcal Electronic energy + Delta-G solvation = -31115.043616 eV Core-core repulsion = 27309.747859 eV Total energy + Delta-G solvation = -3805.295757 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.59077 -40.93906 -38.90604 -37.21599 -35.06821 -33.65732 -33.33150 -32.89483 -32.09183 -30.80363 -28.28876 -27.40014 -27.32252 -25.71679 -24.75798 -24.39887 -22.44842 -21.67331 -21.50351 -20.31761 -19.65823 -18.58036 -18.03706 -17.22553 -16.96408 -16.66108 -16.43550 -15.99673 -15.61762 -15.60355 -15.45699 -14.95226 -14.81052 -14.32932 -14.13533 -14.04365 -13.94536 -13.90122 -13.78620 -13.29882 -13.24373 -13.21342 -13.02715 -12.93139 -12.86754 -12.83130 -12.68026 -12.34675 -12.18029 -12.13913 -12.05321 -11.90474 -11.57535 -11.43505 -11.25393 -11.20356 -10.63953 -10.38098 -9.67756 -9.54536 -8.92681 -8.49784 -7.79092 -5.34996 0.56034 1.47982 1.51187 1.59635 1.62589 1.82026 2.32965 2.37027 2.53900 3.34250 3.52282 3.65818 3.94438 3.96380 4.01470 4.03249 4.12614 4.27607 4.32523 4.36227 4.41422 4.48246 4.52258 4.57268 4.66005 4.66980 4.72098 4.76927 4.79587 4.81833 4.89062 4.94066 4.97231 5.07022 5.11168 5.14269 5.19293 5.21675 5.29474 5.31744 5.38253 5.39487 5.54880 5.68572 5.72928 5.81232 5.96758 6.07698 6.17375 6.36454 6.50773 6.52962 7.22046 7.22552 7.89017 8.45681 9.23944 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.020413 B = 0.003313 C = 0.003154 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1371.355574 B = 8450.688808 C = 8875.124741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.086 3.914 3 N -0.596 5.596 4 C 0.579 3.421 5 O -0.577 6.577 6 C -0.085 4.085 7 C -0.160 4.160 8 C -0.222 4.222 9 C 0.039 3.961 10 C -0.084 4.084 11 N -0.419 5.419 12 C 0.058 3.942 13 C 0.181 3.819 14 H 0.074 0.926 15 C -0.094 4.094 16 C -0.115 4.115 17 C 0.169 3.831 18 N -0.602 5.602 19 C -0.265 4.265 20 H 0.056 0.944 21 C -0.031 4.031 22 N -0.914 5.914 23 Si 0.961 3.039 24 H -0.276 1.276 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.166 3.834 28 C -0.136 4.136 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.181 0.819 35 H 0.165 0.835 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.109 0.891 42 H 0.049 0.951 43 H 0.053 0.947 44 H 0.077 0.923 45 H 0.033 0.967 46 H 0.068 0.932 47 H 0.008 0.992 48 H 0.249 0.751 49 H 0.029 0.971 50 H 0.031 0.969 51 H 0.060 0.940 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.482 -5.649 21.555 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.036 4.036 3 N -0.327 5.327 4 C 0.370 3.630 5 O -0.459 6.459 6 C -0.197 4.197 7 C -0.185 4.185 8 C -0.245 4.245 9 C -0.078 4.078 10 C -0.142 4.142 11 N -0.093 5.093 12 C -0.083 4.083 13 C 0.079 3.921 14 H 0.092 0.908 15 C -0.132 4.132 16 C -0.155 4.155 17 C 0.046 3.954 18 N -0.324 5.324 19 C -0.395 4.395 20 H 0.074 0.926 21 C -0.227 4.227 22 N -0.560 5.560 23 Si 0.790 3.210 24 H -0.201 1.201 25 H -0.216 1.216 26 H -0.219 1.219 27 C 0.038 3.962 28 C -0.178 4.178 29 H 0.082 0.918 30 H 0.067 0.933 31 H 0.119 0.881 32 H 0.095 0.905 33 H 0.122 0.878 34 H 0.197 0.803 35 H 0.182 0.818 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.098 0.902 40 H 0.101 0.899 41 H 0.127 0.873 42 H 0.068 0.932 43 H 0.072 0.928 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.086 0.914 47 H 0.027 0.973 48 H 0.059 0.941 49 H 0.047 0.953 50 H 0.049 0.951 51 H 0.078 0.922 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -3.161 -4.793 21.437 22.193 hybrid contribution 0.408 -0.327 -1.255 1.360 sum -2.753 -5.119 20.182 21.003 Atomic orbital electron populations 1.22363 0.94618 1.04031 1.02119 1.22236 0.95525 0.81522 1.04343 1.48191 1.63789 1.14842 1.05869 1.17336 0.76964 0.85404 0.83259 1.90704 1.50501 1.17074 1.87645 1.20038 1.11341 1.02647 0.85709 1.22679 1.01217 0.95827 0.98813 1.21030 1.07042 1.03117 0.93342 1.21270 1.00440 0.92588 0.93504 1.20504 1.02810 1.05117 0.85736 1.43971 1.37662 1.22586 1.05110 1.22337 0.94163 0.87198 1.04561 1.20944 0.93968 0.94256 0.82975 0.90828 1.21131 0.97924 0.97840 0.96353 1.20791 0.97503 1.03788 0.93370 1.20076 0.84575 0.90946 0.99767 1.44234 1.20871 1.59679 1.07643 1.19373 0.90991 1.21948 1.07184 0.92588 1.25793 0.96179 0.98653 1.02117 1.70037 1.03872 1.44155 1.37892 0.85317 0.78162 0.78419 0.79121 1.20069 1.21636 1.21928 1.20316 0.95379 0.94901 0.85639 1.23031 0.95222 0.99985 0.99553 0.91787 0.93348 0.88070 0.90471 0.87783 0.80252 0.81755 0.89667 0.90864 0.88140 0.90231 0.89868 0.87291 0.93217 0.92793 0.90458 0.94806 0.91414 0.97344 0.94093 0.95298 0.95107 0.92173 0.94158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.93 8.41 71.98 0.61 -3.32 16 2 C 0.09 2.28 5.65 86.38 0.49 2.76 16 3 N -0.60 -20.33 2.31 -804.17 -1.86 -22.19 16 4 C 0.58 20.36 6.64 86.45 0.57 20.94 16 5 O -0.58 -23.29 12.05 -4.31 -0.05 -23.35 16 6 C -0.09 -2.49 6.56 40.35 0.26 -2.23 16 7 C -0.16 -3.81 7.55 22.57 0.17 -3.63 16 8 C -0.22 -4.41 10.71 22.01 0.24 -4.18 16 9 C 0.04 0.77 6.87 41.34 0.28 1.05 16 10 C -0.08 -0.90 9.89 71.24 0.70 -0.20 16 11 N -0.42 -10.47 3.16 -519.72 -1.64 -12.11 16 12 C 0.06 1.23 10.43 127.77 1.33 2.57 16 13 C 0.18 7.32 2.30 44.69 0.10 7.42 16 14 H 0.07 3.37 6.38 -2.39 -0.02 3.36 16 15 C -0.09 -3.93 4.11 29.51 0.12 -3.81 16 16 C -0.12 -5.22 4.98 28.36 0.14 -5.08 16 17 C 0.17 8.34 5.23 83.58 0.44 8.78 16 18 N -0.60 -30.66 2.59 -707.84 -1.83 -32.50 16 19 C -0.26 -14.45 9.59 84.03 0.81 -13.65 16 20 H 0.06 3.08 7.83 -2.91 -0.02 3.06 16 21 C -0.03 -1.66 5.27 84.86 0.45 -1.21 16 22 N -0.91 -49.99 8.89 21.65 0.19 -49.80 16 23 Si 0.96 43.97 29.55 68.60 2.03 45.99 16 24 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 25 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.17 7.59 5.18 87.59 0.45 8.05 16 28 C -0.14 -5.74 5.79 31.87 0.18 -5.56 16 29 H 0.06 1.51 6.32 -2.39 -0.02 1.49 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.10 1.61 8.11 -2.39 -0.02 1.59 16 32 H 0.08 2.11 7.79 -2.39 -0.02 2.09 16 33 H 0.10 2.42 5.22 -2.39 -0.01 2.41 16 34 H 0.18 3.67 3.21 -2.91 -0.01 3.66 16 35 H 0.16 2.30 8.06 -2.91 -0.02 2.28 16 36 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.07 0.67 7.74 -2.38 -0.02 0.66 16 38 H 0.10 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.08 2.27 5.97 -2.39 -0.01 2.26 16 41 H 0.11 1.56 7.79 -2.39 -0.02 1.55 16 42 H 0.05 2.01 7.86 -2.39 -0.02 2.00 16 43 H 0.05 2.40 5.95 -2.38 -0.01 2.38 16 44 H 0.08 3.89 5.13 -2.39 -0.01 3.88 16 45 H 0.03 1.43 8.14 -2.39 -0.02 1.41 16 46 H 0.07 3.68 6.17 -2.39 -0.01 3.67 16 47 H 0.01 0.40 8.12 -2.39 -0.02 0.38 16 48 H 0.25 13.30 8.31 -92.71 -0.77 12.53 16 49 H 0.03 1.31 8.00 -2.39 -0.02 1.29 16 50 H 0.03 1.38 6.88 -2.38 -0.02 1.37 16 51 H 0.06 2.52 6.15 -2.38 -0.01 2.50 16 52 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -65.48 380.86 5.11 -60.37 By element: Atomic # 1 Polarization: 23.96 SS G_CDS: 0.92 Total: 24.88 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: 7.35 Total: 8.70 kcal Atomic # 7 Polarization: -111.45 SS G_CDS: -5.14 Total: -116.59 kcal Atomic # 8 Polarization: -23.29 SS G_CDS: -0.05 Total: -23.35 kcal Atomic # 14 Polarization: 43.97 SS G_CDS: 2.03 Total: 45.99 kcal Total: -65.48 5.11 -60.37 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997910930.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.653 kcal (2) G-P(sol) polarization free energy of solvation -65.478 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.105 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds