Wall clock time and date at job start Tue Mar 31 2020 18:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46503 * 109.47247 * 2 1 4 4 C 1.34777 * 120.00175 * 264.97857 * 3 2 1 5 5 O 1.21694 * 119.99711 * 184.99700 * 4 3 2 6 6 C 1.46672 * 119.99858 * 4.99640 * 4 3 2 7 7 C 1.37877 * 126.23499 * 98.83380 * 6 4 3 8 8 C 1.50700 * 126.45170 * 359.95726 * 7 6 4 9 9 C 1.39831 * 107.08670 * 179.84207 * 7 6 4 10 10 C 1.35451 * 107.86496 * 0.41823 * 9 7 6 11 11 N 1.35532 * 108.87480 * 359.73954 * 10 9 7 12 12 C 1.46500 * 125.68046 * 179.97438 * 11 10 9 13 13 C 1.46502 * 119.99426 * 84.98071 * 3 2 1 14 14 H 1.08988 * 109.20869 * 0.63762 * 13 3 2 15 15 C 1.50130 * 109.20663 * 120.00332 * 13 3 2 16 16 C 1.52526 * 105.40817 * 218.02165 * 15 13 3 17 17 C 1.46238 * 114.27862 * 270.59026 * 16 15 13 18 18 N 1.50165 * 107.53305 * 58.41355 * 17 16 15 19 19 C 1.36933 * 120.54042 * 109.56346 * 18 17 16 20 20 H 1.07999 * 120.00199 * 150.81820 * 19 18 17 21 21 C 1.38815 * 119.99947 * 330.82729 * 19 18 17 22 22 N 1.31623 * 119.99809 * 350.61405 * 21 19 18 23 23 Si 1.86800 * 119.99974 * 170.61648 * 21 19 18 24 24 H 1.48493 * 109.47189 * 269.99712 * 23 21 19 25 25 H 1.48497 * 109.47084 * 29.99888 * 23 21 19 26 26 H 1.48501 * 109.47237 * 149.99857 * 23 21 19 27 27 C 1.43439 * 118.92618 * 289.84129 * 18 17 16 28 28 C 1.54404 * 116.39014 * 91.45207 * 27 18 17 29 29 H 1.09005 * 109.46670 * 304.99229 * 1 2 3 30 30 H 1.08999 * 109.47004 * 64.98769 * 1 2 3 31 31 H 1.09000 * 109.47106 * 184.99305 * 1 2 3 32 32 H 1.09003 * 109.47265 * 240.00209 * 2 1 3 33 33 H 1.08992 * 109.47327 * 120.00399 * 2 1 3 34 34 H 1.09005 * 109.46801 * 90.00460 * 8 7 6 35 35 H 1.09000 * 109.47180 * 209.99804 * 8 7 6 36 36 H 1.08999 * 109.47445 * 330.00327 * 8 7 6 37 37 H 1.07997 * 126.06913 * 180.13141 * 9 7 6 38 38 H 1.08002 * 125.56352 * 179.70120 * 10 9 7 39 39 H 1.08999 * 109.46805 * 274.98658 * 12 11 10 40 40 H 1.08994 * 109.47039 * 34.99269 * 12 11 10 41 41 H 1.09003 * 109.47071 * 154.99325 * 12 11 10 42 42 H 1.08997 * 110.24979 * 99.05640 * 15 13 3 43 43 H 1.08996 * 110.24914 * 336.99031 * 15 13 3 44 44 H 1.09005 * 108.52209 * 149.35188 * 16 15 13 45 45 H 1.09006 * 108.52744 * 31.83785 * 16 15 13 46 46 H 1.08995 * 109.84733 * 298.90054 * 17 16 15 47 47 H 1.09002 * 109.90062 * 177.95083 * 17 16 15 48 48 H 0.97002 * 119.99476 * 180.02562 * 22 21 19 49 49 H 1.08998 * 108.16001 * 213.03134 * 27 18 17 50 50 H 1.09002 * 108.15714 * 329.59760 * 27 18 17 51 51 H 1.08996 * 109.43978 * 198.43945 * 28 27 18 52 52 H 1.08997 * 109.23666 * 78.73658 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3393 1.9826 -1.1627 5 8 2.8302 3.0961 -1.1566 6 6 2.0970 1.2948 -2.4353 7 6 1.0211 1.4900 -3.2752 8 6 -0.1229 2.4465 -3.0573 9 6 1.1929 0.6352 -4.3684 10 6 2.3403 -0.0588 -4.1770 11 7 2.8993 0.3327 -3.0060 12 6 4.1490 -0.1826 -2.4413 13 6 2.1578 2.1087 1.2640 14 1 1.8632 1.4577 2.0868 15 6 3.5919 2.5148 1.4444 16 6 3.8768 2.3450 2.9332 17 6 3.5927 3.5318 3.7390 18 7 2.1434 3.8736 3.5456 19 6 1.2437 3.6907 4.5616 20 1 0.3707 4.3227 4.6301 21 6 1.4540 2.6930 5.5036 22 7 2.4102 1.8070 5.3215 23 14 0.3799 2.6079 7.0295 24 1 0.9944 3.4161 8.1131 25 1 -0.9689 3.1442 6.7160 26 1 0.2603 1.1955 7.4725 27 6 1.7154 4.3891 2.2773 28 6 1.2329 3.3505 1.2417 29 1 -0.3633 0.5894 0.8420 30 1 -0.3633 0.4345 -0.9313 31 1 -0.3633 -1.0238 0.0894 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8899 34 1 0.1214 3.4120 -3.5004 35 1 -1.0231 2.0490 -3.5261 36 1 -0.2944 2.5703 -1.9881 37 1 0.5264 0.5412 -5.2129 38 1 2.7435 -0.8030 -4.8476 39 1 3.9448 -1.0933 -1.8781 40 1 4.8483 -0.4031 -3.2476 41 1 4.5834 0.5651 -1.7778 42 1 3.7291 3.5554 1.1504 43 1 4.2440 1.8666 0.8591 44 1 4.9284 2.0859 3.0571 45 1 3.2737 1.5186 3.3092 46 1 4.2162 4.3621 3.4075 47 1 3.7861 3.3211 4.7908 48 1 2.5569 1.1097 5.9797 49 1 0.8996 5.0903 2.4534 50 1 2.5447 4.9444 1.8390 51 1 1.2493 3.7955 0.2468 52 1 0.2147 3.0469 1.4850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997983886.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:16 Heat of formation + Delta-G solvation = 33.292837 kcal Electronic energy + Delta-G solvation = -31505.674534 eV Core-core repulsion = 27699.642153 eV Total energy + Delta-G solvation = -3806.032381 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.47769 -40.93622 -38.94328 -36.97854 -34.80997 -34.61368 -33.36000 -32.54321 -31.25559 -30.67636 -29.10486 -27.82536 -26.24272 -25.77567 -25.04478 -24.47958 -22.48278 -21.73223 -21.14926 -20.79593 -19.19897 -18.62356 -18.17673 -17.44350 -16.97434 -16.69033 -16.22832 -16.10240 -15.65365 -15.48819 -15.06218 -14.95801 -14.81753 -14.56552 -14.21267 -14.08213 -13.98112 -13.92580 -13.73497 -13.63356 -13.50391 -13.19465 -13.08500 -12.90031 -12.83858 -12.82116 -12.69321 -12.43875 -12.32001 -12.21441 -12.07983 -11.89797 -11.59566 -11.47573 -11.28744 -11.19619 -10.76568 -10.41912 -9.66380 -9.42258 -8.97161 -8.56907 -7.78996 -5.30524 0.97216 1.32702 1.49080 1.51457 1.58457 1.89200 2.00772 2.32663 2.54538 3.34319 3.48794 3.63381 3.87373 3.94731 3.97659 4.10028 4.24846 4.29150 4.32226 4.37540 4.38805 4.43476 4.45260 4.46977 4.60611 4.64600 4.69940 4.76304 4.80496 4.84737 4.86779 4.89345 4.95547 5.04839 5.09180 5.13160 5.18149 5.21023 5.28100 5.29503 5.36568 5.47545 5.53001 5.67236 5.69250 5.77062 5.97557 6.09583 6.15422 6.41276 6.46514 6.47653 7.12003 7.21304 7.89305 8.44098 9.24282 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018799 B = 0.003602 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.045619 B = 7772.455606 C = 7936.892172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.107 3.893 3 N -0.595 5.595 4 C 0.590 3.410 5 O -0.564 6.564 6 C -0.064 4.064 7 C -0.129 4.129 8 C -0.082 4.082 9 C -0.214 4.214 10 C 0.018 3.982 11 N -0.428 5.428 12 C 0.063 3.937 13 C 0.178 3.822 14 H 0.075 0.925 15 C -0.096 4.096 16 C -0.118 4.118 17 C 0.171 3.829 18 N -0.600 5.600 19 C -0.264 4.264 20 H 0.057 0.943 21 C -0.032 4.032 22 N -0.916 5.916 23 Si 0.961 3.039 24 H -0.290 1.290 25 H -0.277 1.277 26 H -0.292 1.292 27 C 0.164 3.836 28 C -0.135 4.135 29 H 0.040 0.960 30 H 0.057 0.943 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.079 0.921 34 H 0.060 0.940 35 H 0.086 0.914 36 H 0.039 0.961 37 H 0.160 0.840 38 H 0.205 0.795 39 H 0.094 0.906 40 H 0.117 0.883 41 H 0.061 0.939 42 H 0.053 0.947 43 H 0.053 0.947 44 H 0.037 0.963 45 H 0.079 0.921 46 H 0.011 0.989 47 H 0.064 0.936 48 H 0.249 0.751 49 H 0.028 0.972 50 H 0.031 0.969 51 H 0.058 0.942 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.456 -9.625 -18.590 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.015 4.015 3 N -0.327 5.327 4 C 0.377 3.623 5 O -0.442 6.442 6 C -0.177 4.177 7 C -0.137 4.137 8 C -0.139 4.139 9 C -0.237 4.237 10 C -0.115 4.115 11 N -0.104 5.104 12 C -0.077 4.077 13 C 0.076 3.924 14 H 0.093 0.907 15 C -0.134 4.134 16 C -0.157 4.157 17 C 0.048 3.952 18 N -0.322 5.322 19 C -0.394 4.394 20 H 0.075 0.925 21 C -0.229 4.229 22 N -0.562 5.562 23 Si 0.790 3.210 24 H -0.217 1.217 25 H -0.203 1.203 26 H -0.218 1.218 27 C 0.035 3.965 28 C -0.176 4.176 29 H 0.059 0.941 30 H 0.076 0.924 31 H 0.104 0.896 32 H 0.106 0.894 33 H 0.097 0.903 34 H 0.078 0.922 35 H 0.105 0.895 36 H 0.058 0.942 37 H 0.177 0.823 38 H 0.222 0.778 39 H 0.113 0.887 40 H 0.136 0.864 41 H 0.080 0.920 42 H 0.072 0.928 43 H 0.071 0.929 44 H 0.055 0.945 45 H 0.097 0.903 46 H 0.029 0.971 47 H 0.083 0.917 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.076 0.924 52 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 1.104 -9.293 -18.244 20.504 hybrid contribution -0.556 0.116 1.201 1.328 sum 0.548 -9.177 -17.044 19.365 Atomic orbital electron populations 1.22104 0.95110 1.03028 1.01698 1.21674 0.95467 0.81251 1.03127 1.48554 1.63659 1.14625 1.05841 1.17476 0.77019 0.84863 0.82906 1.90789 1.44410 1.21395 1.87602 1.19952 0.98096 1.01877 0.97810 1.19986 0.96075 1.01695 0.95926 1.20187 0.95807 0.97250 1.00684 1.20931 1.00535 1.01547 1.00728 1.22466 0.96139 1.03572 0.89348 1.44061 1.19155 1.29250 1.17915 1.22328 0.83636 1.00433 1.01351 1.20951 0.95277 0.93034 0.83133 0.90728 1.21150 0.95111 1.00661 0.96509 1.20801 0.99617 1.01923 0.93335 1.20039 0.82566 0.93033 0.99566 1.44285 1.03886 1.76263 1.07804 1.19384 1.04431 1.11003 1.04603 0.92498 1.25641 0.99731 0.95270 1.02217 1.70033 1.34158 1.16499 1.35462 0.85384 0.78965 0.76316 0.80341 1.21671 1.20276 1.21843 1.20232 0.96747 0.93612 0.85901 1.22934 0.97905 0.97394 0.99399 0.94061 0.92396 0.89598 0.89380 0.90281 0.92158 0.89486 0.94217 0.82283 0.77800 0.88714 0.86430 0.92014 0.92838 0.92853 0.94459 0.90268 0.97088 0.91739 0.94141 0.95377 0.95091 0.92354 0.94113 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.07 10.24 71.98 0.74 -3.33 16 2 C 0.11 2.83 5.92 86.38 0.51 3.34 16 3 N -0.60 -19.67 2.29 -804.17 -1.84 -21.52 16 4 C 0.59 20.35 5.58 86.45 0.48 20.83 16 5 O -0.56 -23.74 14.37 -4.33 -0.06 -23.80 16 6 C -0.06 -1.83 4.93 40.35 0.20 -1.63 16 7 C -0.13 -3.35 6.21 -19.56 -0.12 -3.47 16 8 C -0.08 -2.04 10.20 71.24 0.73 -1.32 16 9 C -0.21 -4.21 10.76 22.01 0.24 -3.97 16 10 C 0.02 0.29 11.38 83.48 0.95 1.24 16 11 N -0.43 -8.99 2.74 -534.31 -1.46 -10.45 16 12 C 0.06 0.97 10.54 127.77 1.35 2.31 16 13 C 0.18 7.06 2.31 44.70 0.10 7.17 16 14 H 0.07 3.37 6.52 -2.39 -0.02 3.35 16 15 C -0.10 -3.88 4.10 29.51 0.12 -3.76 16 16 C -0.12 -5.18 4.99 28.36 0.14 -5.03 16 17 C 0.17 8.27 5.23 83.58 0.44 8.71 16 18 N -0.60 -30.34 2.60 -708.86 -1.84 -32.18 16 19 C -0.26 -14.35 9.62 84.03 0.81 -13.54 16 20 H 0.06 3.12 7.85 -2.91 -0.02 3.09 16 21 C -0.03 -1.72 5.11 84.86 0.43 -1.29 16 22 N -0.92 -49.63 9.07 21.65 0.20 -49.43 16 23 Si 0.96 43.88 29.56 68.60 2.03 45.90 16 24 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 25 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 26 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 27 C 0.16 7.48 5.13 87.42 0.45 7.93 16 28 C -0.13 -5.67 5.78 31.70 0.18 -5.48 16 29 H 0.04 1.23 8.14 -2.38 -0.02 1.21 16 30 H 0.06 1.47 8.08 -2.39 -0.02 1.45 16 31 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 32 H 0.09 2.00 5.86 -2.39 -0.01 1.98 16 33 H 0.08 2.08 8.02 -2.39 -0.02 2.06 16 34 H 0.06 1.52 8.14 -2.38 -0.02 1.50 16 35 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.04 1.13 7.90 -2.39 -0.02 1.11 16 37 H 0.16 2.35 8.06 -2.91 -0.02 2.32 16 38 H 0.21 1.57 8.06 -2.91 -0.02 1.55 16 39 H 0.09 1.11 8.00 -2.39 -0.02 1.10 16 40 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.06 1.26 7.68 -2.39 -0.02 1.24 16 42 H 0.05 2.34 5.95 -2.39 -0.01 2.32 16 43 H 0.05 2.02 7.86 -2.39 -0.02 2.00 16 44 H 0.04 1.52 8.14 -2.38 -0.02 1.50 16 45 H 0.08 3.90 5.11 -2.38 -0.01 3.89 16 46 H 0.01 0.51 8.13 -2.39 -0.02 0.49 16 47 H 0.06 3.44 6.17 -2.39 -0.01 3.43 16 48 H 0.25 13.20 8.31 -92.71 -0.77 12.43 16 49 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 50 H 0.03 1.39 6.89 -2.39 -0.02 1.38 16 51 H 0.06 2.48 6.18 -2.39 -0.01 2.46 16 52 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -66.00 395.58 5.65 -60.35 By element: Atomic # 1 Polarization: 21.54 SS G_CDS: 0.89 Total: 22.43 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: 7.74 Total: 8.71 kcal Atomic # 7 Polarization: -108.64 SS G_CDS: -4.95 Total: -113.59 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.06 Total: -23.80 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Total: -66.00 5.65 -60.35 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997983886.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.644 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.351 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds