Wall clock time and date at job start Tue Mar 31 2020 18:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47024 * 2 1 4 4 C 1.34776 * 120.00031 * 271.79443 * 3 2 1 5 5 O 1.21701 * 120.00160 * 185.98454 * 4 3 2 6 6 C 1.46682 * 119.99901 * 5.98089 * 4 3 2 7 7 N 1.37647 * 126.23296 * 6.61939 * 6 4 3 8 8 H 0.97003 * 125.67597 * 359.96361 * 7 6 4 9 9 C 1.35532 * 108.64408 * 179.82666 * 7 6 4 10 10 C 1.50701 * 125.56532 * 180.13636 * 9 7 6 11 11 C 1.35459 * 108.87127 * 0.43670 * 9 7 6 12 12 C 1.37874 * 126.22944 * 186.92378 * 6 4 3 13 13 C 1.50692 * 126.45932 * 0.04174 * 12 6 4 14 14 C 1.46497 * 120.00019 * 91.79660 * 3 2 1 15 15 H 1.08998 * 109.48967 * 0.04366 * 14 3 2 16 16 C 1.52572 * 109.49085 * 239.99772 * 14 3 2 17 17 C 1.47088 * 114.32564 * 154.99903 * 16 14 3 18 18 C 1.54861 * 110.32496 * 62.80407 * 17 16 14 19 19 N 1.44580 * 109.60186 * 288.73300 * 18 17 16 20 20 C 1.36936 * 118.64267 * 270.72781 * 19 18 17 21 21 H 1.08001 * 120.00084 * 27.27986 * 20 19 18 22 22 C 1.38809 * 120.00082 * 207.27773 * 20 19 18 23 23 N 1.31625 * 119.99900 * 17.69690 * 22 20 19 24 24 Si 1.86797 * 120.00405 * 197.69776 * 22 20 19 25 25 H 1.48502 * 109.47269 * 94.98166 * 24 22 20 26 26 H 1.48498 * 109.47480 * 214.98385 * 24 22 20 27 27 H 1.48501 * 109.46886 * 334.98500 * 24 22 20 28 28 C 1.47602 * 122.71236 * 90.72180 * 19 18 17 29 29 C 1.50879 * 109.51013 * 120.10360 * 14 3 2 30 30 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47194 * 300.00395 * 1 2 3 32 32 H 1.09000 * 109.46798 * 60.00243 * 1 2 3 33 33 H 1.09004 * 109.47313 * 240.00277 * 2 1 3 34 34 H 1.09001 * 109.47520 * 119.99925 * 2 1 3 35 35 H 1.09004 * 109.46754 * 270.32602 * 10 9 7 36 36 H 1.09000 * 109.47280 * 30.32501 * 10 9 7 37 37 H 1.09000 * 109.47160 * 150.33130 * 10 9 7 38 38 H 1.07994 * 126.06727 * 179.69376 * 11 9 7 39 39 H 1.08992 * 109.47532 * 90.00187 * 13 12 6 40 40 H 1.09013 * 109.47067 * 209.99646 * 13 12 6 41 41 H 1.09000 * 109.47552 * 329.99415 * 13 12 6 42 42 H 1.09003 * 108.50864 * 33.74317 * 16 14 3 43 43 H 1.08994 * 108.39145 * 276.16764 * 16 14 3 44 44 H 1.08997 * 109.33015 * 302.54184 * 17 16 14 45 45 H 1.09001 * 109.18959 * 182.97736 * 17 16 14 46 46 H 1.09001 * 109.44955 * 48.77121 * 18 17 16 47 47 H 1.08994 * 109.45369 * 168.69023 * 18 17 16 48 48 H 0.97001 * 120.00203 * 179.97438 * 23 22 20 49 49 H 1.09001 * 108.94668 * 197.18760 * 28 19 18 50 50 H 1.09000 * 108.87845 * 78.51525 * 28 19 18 51 51 H 1.09001 * 109.36520 * 332.05129 * 29 14 3 52 52 H 1.08998 * 109.37134 * 91.66963 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2084 2.0288 -1.1666 5 8 2.7159 3.1349 -1.1730 6 6 1.8038 1.4003 -2.4287 7 7 1.1082 0.2202 -2.5636 8 1 0.8004 -0.3415 -1.8351 9 6 0.9223 -0.0247 -3.8836 10 6 0.2025 -1.2161 -4.4611 11 6 1.4950 0.9727 -4.5992 12 6 2.0562 1.8810 -3.6960 13 6 2.7978 3.1461 -4.0427 14 6 2.2999 2.0586 1.2681 15 1 2.0892 1.3821 2.0963 16 6 1.4210 3.2999 1.3883 17 6 1.1661 3.7301 2.7716 18 6 2.4924 4.1312 3.4633 19 7 3.2827 2.9480 3.7198 20 6 3.1058 2.2846 4.9047 21 1 2.1557 2.3360 5.4157 22 6 4.1475 1.5461 5.4489 23 7 5.3822 1.7500 5.0408 24 14 3.7973 0.2630 6.7605 25 1 3.6551 -1.0706 6.1229 26 1 4.9193 0.2298 7.7327 27 1 2.5389 0.6098 7.4686 28 6 4.2723 2.4255 2.7573 29 6 3.7516 2.4678 1.3092 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.9131 -2.0266 -4.6229 36 1 -0.5714 -1.5445 -3.7673 37 1 -0.2548 -0.9389 -5.4109 38 1 1.5151 1.0521 -5.6760 39 1 3.8601 2.9270 -4.1492 40 1 2.4137 3.5470 -4.9809 41 1 2.6559 3.8796 -3.2490 42 1 0.4644 3.0944 0.9079 43 1 1.9060 4.1176 0.8554 44 1 0.7039 2.9123 3.3244 45 1 0.4911 4.5859 2.7621 46 1 3.0502 4.8066 2.8146 47 1 2.2731 4.6325 4.4058 48 1 6.1102 1.2342 5.4214 49 1 4.5094 1.3941 3.0182 50 1 5.1803 3.0249 2.8247 51 1 4.3373 1.7844 0.6944 52 1 3.8531 3.4801 0.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998048290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:29 Heat of formation + Delta-G solvation = 49.488649 kcal Electronic energy + Delta-G solvation = -30946.371458 eV Core-core repulsion = 27141.041381 eV Total energy + Delta-G solvation = -3805.330078 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -41.77423 -39.62306 -37.27579 -36.07325 -33.60353 -32.71453 -32.12159 -31.14685 -30.69037 -29.86101 -27.75938 -26.60362 -25.69509 -23.97697 -23.55628 -23.18646 -21.23750 -20.57451 -19.70606 -19.30248 -18.87322 -17.16242 -16.61980 -15.93595 -15.81607 -15.32295 -14.91855 -14.46031 -14.26919 -14.19796 -13.85479 -13.66981 -13.37285 -13.31430 -13.03273 -13.01286 -12.86564 -12.74462 -12.63869 -12.41758 -12.35673 -12.10565 -12.05070 -11.91152 -11.54434 -11.42974 -11.23037 -11.10131 -10.84718 -10.79512 -10.33493 -10.25391 -10.05401 -9.81725 -9.68069 -9.55562 -9.29717 -8.77813 -8.48704 -8.36561 -7.98507 -6.62647 -5.76538 -3.20235 1.50041 2.62680 2.97296 3.21779 3.35166 3.43365 3.44776 3.52071 4.50439 4.51147 4.61229 4.66543 4.85753 4.89252 5.06346 5.16100 5.22108 5.31790 5.34872 5.36837 5.41333 5.51143 5.55982 5.56447 5.61176 5.71612 5.87864 5.90965 5.92652 5.93205 6.05497 6.15872 6.17611 6.35817 6.42400 6.45194 6.53860 6.60533 6.65849 6.72894 6.79923 6.89963 6.96287 6.96835 7.08003 7.14749 7.32385 7.44798 7.64107 7.73599 7.84700 8.41726 8.49358 9.25970 9.93738 10.40457 11.30589 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.003401 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.299017 B = 8230.039061 C = 8842.518945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.085 3.915 3 N -0.609 5.609 4 C 0.586 3.414 5 O -0.516 6.516 6 C -0.052 4.052 7 N -0.547 5.547 8 H 0.423 0.577 9 C 0.036 3.964 10 C -0.088 4.088 11 C -0.209 4.209 12 C -0.078 4.078 13 C -0.091 4.091 14 C 0.167 3.833 15 H 0.098 0.902 16 C -0.109 4.109 17 C -0.141 4.141 18 C 0.156 3.844 19 N -0.591 5.591 20 C -0.259 4.259 21 H 0.065 0.935 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.897 3.103 25 H -0.289 1.289 26 H -0.292 1.292 27 H -0.279 1.279 28 C 0.182 3.818 29 C -0.143 4.143 30 H 0.071 0.929 31 H 0.078 0.922 32 H 0.060 0.940 33 H 0.074 0.926 34 H 0.095 0.905 35 H 0.074 0.926 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.138 0.862 39 H 0.064 0.936 40 H 0.058 0.942 41 H 0.083 0.917 42 H 0.038 0.962 43 H 0.065 0.935 44 H 0.057 0.943 45 H 0.048 0.952 46 H 0.033 0.967 47 H 0.045 0.955 48 H 0.253 0.747 49 H 0.068 0.932 50 H 0.027 0.973 51 H 0.051 0.949 52 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.827 -5.827 -18.006 21.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.039 4.039 3 N -0.342 5.342 4 C 0.375 3.625 5 O -0.392 6.392 6 C -0.164 4.164 7 N -0.154 5.154 8 H 0.271 0.729 9 C -0.081 4.081 10 C -0.146 4.146 11 C -0.233 4.233 12 C -0.086 4.086 13 C -0.148 4.148 14 C 0.066 3.934 15 H 0.116 0.884 16 C -0.148 4.148 17 C -0.182 4.182 18 C 0.028 3.972 19 N -0.313 5.313 20 C -0.389 4.389 21 H 0.083 0.917 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.727 3.273 25 H -0.217 1.217 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.056 3.944 29 C -0.183 4.183 30 H 0.090 0.910 31 H 0.097 0.903 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.113 0.887 35 H 0.093 0.907 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.156 0.844 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.102 0.898 42 H 0.057 0.943 43 H 0.083 0.917 44 H 0.076 0.924 45 H 0.067 0.933 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.063 0.937 49 H 0.086 0.914 50 H 0.045 0.955 51 H 0.070 0.930 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -10.410 -5.372 -17.748 21.265 hybrid contribution -0.368 -1.261 0.962 1.628 sum -10.778 -6.633 -16.786 21.022 Atomic orbital electron populations 1.22545 0.96130 1.02697 1.03898 1.21908 0.94162 0.84184 1.03661 1.48343 1.65907 1.13163 1.06792 1.17074 0.78623 0.85101 0.81667 1.90786 1.43190 1.19267 1.85982 1.20365 1.09421 0.91373 0.95290 1.43411 1.44381 1.19854 1.07769 0.72867 1.20562 1.04371 0.99571 0.83617 1.20384 0.99148 0.93846 1.01195 1.20547 1.07278 0.96487 0.99013 1.19921 1.00646 0.97709 0.90337 1.20345 0.98603 0.93971 1.01848 1.20624 0.95870 0.94468 0.82474 0.88442 1.20638 0.98155 0.97970 0.98007 1.21430 1.00659 1.00210 0.95920 1.20701 0.90194 0.89113 0.97147 1.43686 1.44651 1.26644 1.16337 1.19209 0.95667 1.25221 0.98814 0.91743 1.25035 0.94845 1.01329 0.98148 1.70096 0.97961 1.41035 1.45322 0.86357 0.77358 0.82121 0.81454 1.21656 1.21838 1.20418 1.20953 0.90144 0.99702 0.83560 1.22387 0.94181 1.01395 1.00299 0.91013 0.90312 0.92129 0.90806 0.88683 0.90749 0.91748 0.89896 0.84382 0.91758 0.92296 0.89824 0.94298 0.91662 0.92396 0.93291 0.94825 0.93704 0.93737 0.91373 0.95455 0.92986 0.91881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.85 8.93 37.16 0.33 -1.52 16 2 C 0.09 0.99 5.58 -4.04 -0.02 0.97 16 3 N -0.61 -9.41 2.26 -169.11 -0.38 -9.79 16 4 C 0.59 9.76 7.03 -12.85 -0.09 9.67 16 5 O -0.52 -9.95 12.01 5.19 0.06 -9.88 16 6 C -0.05 -0.75 6.56 -81.98 -0.54 -1.29 16 7 N -0.55 -6.12 4.20 -5.69 -0.02 -6.14 16 8 H 0.42 3.93 3.41 -40.82 -0.14 3.79 16 9 C 0.04 0.36 7.13 -81.95 -0.58 -0.22 16 10 C -0.09 -0.54 10.41 36.01 0.37 -0.17 16 11 C -0.21 -2.37 10.66 -39.97 -0.43 -2.80 16 12 C -0.08 -1.07 6.21 -104.16 -0.65 -1.72 16 13 C -0.09 -1.17 9.91 36.00 0.36 -0.81 16 14 C 0.17 3.01 2.17 -69.22 -0.15 2.86 16 15 H 0.10 1.91 7.11 -51.93 -0.37 1.54 16 16 C -0.11 -1.95 4.01 -29.79 -0.12 -2.07 16 17 C -0.14 -2.57 5.74 -28.59 -0.16 -2.74 16 18 C 0.16 3.33 5.65 -4.09 -0.02 3.31 16 19 N -0.59 -14.47 2.27 -172.09 -0.39 -14.86 16 20 C -0.26 -6.91 9.42 -15.06 -0.14 -7.05 16 21 H 0.06 1.70 7.89 -52.49 -0.41 1.29 16 22 C 0.01 0.15 4.80 -17.43 -0.08 0.06 16 23 N -0.90 -25.89 11.21 55.49 0.62 -25.27 16 24 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 27 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 28 C 0.18 4.37 4.68 -2.94 -0.01 4.36 16 29 C -0.14 -2.91 4.21 -27.30 -0.11 -3.03 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 32 H 0.06 0.60 6.45 -51.93 -0.34 0.27 16 33 H 0.07 0.77 5.21 -51.93 -0.27 0.50 16 34 H 0.09 1.10 7.88 -51.93 -0.41 0.70 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.63 8.14 -51.92 -0.42 0.20 16 41 H 0.08 1.25 6.37 -51.93 -0.33 0.91 16 42 H 0.04 0.66 8.04 -51.93 -0.42 0.24 16 43 H 0.06 1.26 6.42 -51.93 -0.33 0.93 16 44 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 46 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 47 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16 48 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.07 1.79 6.45 -51.93 -0.34 1.46 16 50 H 0.03 0.73 8.03 -51.93 -0.42 0.31 16 51 H 0.05 1.05 7.97 -51.93 -0.41 0.64 16 52 H 0.06 1.35 6.60 -51.93 -0.34 1.01 16 LS Contribution 389.48 15.07 5.87 5.87 Total: -1.00 -31.14 389.48 -10.05 -41.19 By element: Atomic # 1 Polarization: 13.52 SS G_CDS: -8.72 Total: 4.80 kcal Atomic # 6 Polarization: -0.13 SS G_CDS: -2.06 Total: -2.19 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.17 Total: -56.06 kcal Atomic # 8 Polarization: -9.95 SS G_CDS: 0.06 Total: -9.88 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -31.14 -10.05 -41.19 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998048290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.683 kcal (2) G-P(sol) polarization free energy of solvation -31.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.051 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds