Wall clock time and date at job start Tue Mar 31 2020 18:31:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46502 * 109.47024 * 2 1 4 4 C 1.34776 * 120.00031 * 271.79443 * 3 2 1 5 5 O 1.21701 * 120.00160 * 185.98454 * 4 3 2 6 6 C 1.46682 * 119.99901 * 5.98089 * 4 3 2 7 7 N 1.37647 * 126.23296 * 6.61939 * 6 4 3 8 8 H 0.97003 * 125.67597 * 359.96361 * 7 6 4 9 9 C 1.35532 * 108.64408 * 179.82666 * 7 6 4 10 10 C 1.50701 * 125.56532 * 180.13636 * 9 7 6 11 11 C 1.35459 * 108.87127 * 0.43670 * 9 7 6 12 12 C 1.37874 * 126.22944 * 186.92378 * 6 4 3 13 13 C 1.50692 * 126.45932 * 0.04174 * 12 6 4 14 14 C 1.46497 * 120.00019 * 91.79660 * 3 2 1 15 15 H 1.08998 * 109.48967 * 0.04366 * 14 3 2 16 16 C 1.52572 * 109.49085 * 239.99772 * 14 3 2 17 17 C 1.47088 * 114.32564 * 154.99903 * 16 14 3 18 18 C 1.54861 * 110.32496 * 62.80407 * 17 16 14 19 19 N 1.44580 * 109.60186 * 288.73300 * 18 17 16 20 20 C 1.36936 * 118.64267 * 270.72781 * 19 18 17 21 21 H 1.08001 * 120.00084 * 27.27986 * 20 19 18 22 22 C 1.38809 * 120.00082 * 207.27773 * 20 19 18 23 23 N 1.31625 * 119.99900 * 17.69690 * 22 20 19 24 24 Si 1.86797 * 120.00405 * 197.69776 * 22 20 19 25 25 H 1.48502 * 109.47269 * 94.98166 * 24 22 20 26 26 H 1.48498 * 109.47480 * 214.98385 * 24 22 20 27 27 H 1.48501 * 109.46886 * 334.98500 * 24 22 20 28 28 C 1.47602 * 122.71236 * 90.72180 * 19 18 17 29 29 C 1.50879 * 109.51013 * 120.10360 * 14 3 2 30 30 H 1.09002 * 109.46830 * 179.97438 * 1 2 3 31 31 H 1.08997 * 109.47194 * 300.00395 * 1 2 3 32 32 H 1.09000 * 109.46798 * 60.00243 * 1 2 3 33 33 H 1.09004 * 109.47313 * 240.00277 * 2 1 3 34 34 H 1.09001 * 109.47520 * 119.99925 * 2 1 3 35 35 H 1.09004 * 109.46754 * 270.32602 * 10 9 7 36 36 H 1.09000 * 109.47280 * 30.32501 * 10 9 7 37 37 H 1.09000 * 109.47160 * 150.33130 * 10 9 7 38 38 H 1.07994 * 126.06727 * 179.69376 * 11 9 7 39 39 H 1.08992 * 109.47532 * 90.00187 * 13 12 6 40 40 H 1.09013 * 109.47067 * 209.99646 * 13 12 6 41 41 H 1.09000 * 109.47552 * 329.99415 * 13 12 6 42 42 H 1.09003 * 108.50864 * 33.74317 * 16 14 3 43 43 H 1.08994 * 108.39145 * 276.16764 * 16 14 3 44 44 H 1.08997 * 109.33015 * 302.54184 * 17 16 14 45 45 H 1.09001 * 109.18959 * 182.97736 * 17 16 14 46 46 H 1.09001 * 109.44955 * 48.77121 * 18 17 16 47 47 H 1.08994 * 109.45369 * 168.69023 * 18 17 16 48 48 H 0.97001 * 120.00203 * 179.97438 * 23 22 20 49 49 H 1.09001 * 108.94668 * 197.18760 * 28 19 18 50 50 H 1.09000 * 108.87845 * 78.51525 * 28 19 18 51 51 H 1.09001 * 109.36520 * 332.05129 * 29 14 3 52 52 H 1.08998 * 109.37134 * 91.66963 * 29 14 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2084 2.0288 -1.1666 5 8 2.7159 3.1349 -1.1730 6 6 1.8038 1.4003 -2.4287 7 7 1.1082 0.2202 -2.5636 8 1 0.8004 -0.3415 -1.8351 9 6 0.9223 -0.0247 -3.8836 10 6 0.2025 -1.2161 -4.4611 11 6 1.4950 0.9727 -4.5992 12 6 2.0562 1.8810 -3.6960 13 6 2.7978 3.1461 -4.0427 14 6 2.2999 2.0586 1.2681 15 1 2.0892 1.3821 2.0963 16 6 1.4210 3.2999 1.3883 17 6 1.1661 3.7301 2.7716 18 6 2.4924 4.1312 3.4633 19 7 3.2827 2.9480 3.7198 20 6 3.1058 2.2846 4.9047 21 1 2.1557 2.3360 5.4157 22 6 4.1475 1.5461 5.4489 23 7 5.3822 1.7500 5.0408 24 14 3.7973 0.2630 6.7605 25 1 3.6551 -1.0706 6.1229 26 1 4.9193 0.2298 7.7327 27 1 2.5389 0.6098 7.4686 28 6 4.2723 2.4255 2.7573 29 6 3.7516 2.4678 1.3092 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 0.9131 -2.0266 -4.6229 36 1 -0.5714 -1.5445 -3.7673 37 1 -0.2548 -0.9389 -5.4109 38 1 1.5151 1.0521 -5.6760 39 1 3.8601 2.9270 -4.1492 40 1 2.4137 3.5470 -4.9809 41 1 2.6559 3.8796 -3.2490 42 1 0.4644 3.0944 0.9079 43 1 1.9060 4.1176 0.8554 44 1 0.7039 2.9123 3.3244 45 1 0.4911 4.5859 2.7621 46 1 3.0502 4.8066 2.8146 47 1 2.2731 4.6325 4.4058 48 1 6.1102 1.2342 5.4214 49 1 4.5094 1.3941 3.0182 50 1 5.1803 3.0249 2.8247 51 1 4.3373 1.7844 0.6944 52 1 3.8531 3.4801 0.9180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998048290.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:28 Heat of formation + Delta-G solvation = 33.760620 kcal Electronic energy + Delta-G solvation = -30947.053477 eV Core-core repulsion = 27141.041381 eV Total energy + Delta-G solvation = -3806.012096 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.74503 -40.91074 -38.87311 -37.31825 -35.30837 -33.75573 -33.46243 -32.66465 -31.99239 -31.12743 -28.59709 -28.07369 -27.15430 -25.51270 -25.08680 -24.50250 -22.46833 -21.46204 -21.26770 -20.86550 -19.92266 -18.59988 -18.21224 -17.34473 -17.02796 -16.58253 -16.39902 -16.06021 -15.64927 -15.40280 -15.26415 -14.86405 -14.73994 -14.54627 -14.11724 -14.04847 -13.93590 -13.84071 -13.73068 -13.59984 -13.48522 -13.29408 -13.12751 -13.04221 -12.89367 -12.85705 -12.73403 -12.51110 -12.36523 -12.27046 -12.05874 -11.99479 -11.81059 -11.59730 -11.36956 -11.33939 -10.71728 -10.42266 -9.80486 -9.63943 -8.93136 -8.66109 -7.84625 -5.31949 0.47004 1.47040 1.48447 1.58092 1.75179 1.86550 2.25441 2.37144 2.52753 3.27903 3.46218 3.66179 3.69670 3.86149 3.96023 3.98061 4.08931 4.20223 4.22563 4.31278 4.34336 4.43062 4.45545 4.62828 4.64897 4.65388 4.69903 4.80721 4.82445 4.85537 4.88930 4.90259 4.94475 5.02540 5.10529 5.14506 5.16202 5.17786 5.19654 5.22326 5.29108 5.44423 5.50110 5.53818 5.62891 5.68921 5.72360 5.87894 6.00626 6.41389 6.43318 6.55036 7.17413 7.18204 7.92951 8.36285 9.21141 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017202 B = 0.003401 C = 0.003166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.299017 B = 8230.039061 C = 8842.518945 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.078 3.922 3 N -0.610 5.610 4 C 0.580 3.420 5 O -0.556 6.556 6 C -0.086 4.086 7 N -0.539 5.539 8 H 0.430 0.570 9 C 0.057 3.943 10 C -0.089 4.089 11 C -0.224 4.224 12 C -0.091 4.091 13 C -0.088 4.088 14 C 0.178 3.822 15 H 0.086 0.914 16 C -0.100 4.100 17 C -0.125 4.125 18 C 0.151 3.849 19 N -0.602 5.602 20 C -0.263 4.263 21 H 0.070 0.930 22 C -0.048 4.048 23 N -0.936 5.936 24 Si 0.964 3.036 25 H -0.284 1.284 26 H -0.300 1.300 27 H -0.267 1.267 28 C 0.199 3.801 29 C -0.122 4.122 30 H 0.107 0.893 31 H 0.065 0.935 32 H 0.058 0.942 33 H 0.089 0.911 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.099 0.901 38 H 0.160 0.840 39 H 0.062 0.938 40 H 0.080 0.920 41 H 0.057 0.943 42 H 0.053 0.947 43 H 0.048 0.952 44 H 0.055 0.945 45 H 0.075 0.925 46 H 0.029 0.971 47 H 0.042 0.958 48 H 0.248 0.752 49 H 0.042 0.958 50 H -0.010 1.010 51 H 0.048 0.952 52 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.807 -8.112 -19.538 25.262 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.045 4.045 3 N -0.342 5.342 4 C 0.372 3.628 5 O -0.435 6.435 6 C -0.197 4.197 7 N -0.147 5.147 8 H 0.281 0.719 9 C -0.062 4.062 10 C -0.146 4.146 11 C -0.248 4.248 12 C -0.100 4.100 13 C -0.145 4.145 14 C 0.075 3.925 15 H 0.104 0.896 16 C -0.138 4.138 17 C -0.166 4.166 18 C 0.024 3.976 19 N -0.324 5.324 20 C -0.393 4.393 21 H 0.087 0.913 22 C -0.243 4.243 23 N -0.582 5.582 24 Si 0.792 3.208 25 H -0.211 1.211 26 H -0.227 1.227 27 H -0.191 1.191 28 C 0.073 3.927 29 C -0.162 4.162 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.077 0.923 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.118 0.882 38 H 0.178 0.822 39 H 0.080 0.920 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.074 0.926 45 H 0.094 0.906 46 H 0.047 0.953 47 H 0.060 0.940 48 H 0.057 0.943 49 H 0.061 0.939 50 H 0.008 0.992 51 H 0.067 0.933 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.442 -7.674 -19.281 24.725 hybrid contribution 0.564 -0.531 1.350 1.557 sum -12.877 -8.205 -17.930 23.551 Atomic orbital electron populations 1.22477 0.93950 1.04816 1.03121 1.22178 0.95923 0.81987 1.04365 1.48312 1.65926 1.14526 1.05463 1.17451 0.78035 0.84802 0.82553 1.90761 1.45082 1.20990 1.86641 1.20032 1.12176 0.93300 0.94242 1.43371 1.43783 1.18882 1.08687 0.71922 1.21269 1.02196 0.99870 0.82820 1.20578 0.99584 0.92323 1.02095 1.20850 1.07564 0.96381 0.99999 1.20242 1.00630 0.98167 0.90967 1.20302 0.98713 0.93567 1.01954 1.20263 0.93958 0.94608 0.83630 0.89618 1.20521 0.98505 0.97141 0.97632 1.21248 0.98859 1.01089 0.95393 1.20855 0.91303 0.88075 0.97317 1.43857 1.44881 1.27633 1.16063 1.19516 0.95675 1.24934 0.99180 0.91260 1.25800 0.94587 1.03331 1.00602 1.70265 0.98801 1.42132 1.47010 0.85303 0.77144 0.79591 0.78735 1.21100 1.22668 1.19101 1.20613 0.89196 0.97214 0.85634 1.22108 0.96147 1.00629 0.97322 0.87418 0.91575 0.92340 0.89366 0.88750 0.89254 0.90068 0.88228 0.82240 0.91962 0.90073 0.92398 0.92785 0.93304 0.92625 0.90615 0.95281 0.93956 0.94295 0.93926 0.99203 0.93302 0.93166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.03 8.93 71.98 0.64 -2.39 16 2 C 0.08 1.71 5.58 86.38 0.48 2.19 16 3 N -0.61 -18.79 2.26 -807.15 -1.82 -20.62 16 4 C 0.58 19.57 7.03 86.45 0.61 20.18 16 5 O -0.56 -22.34 12.01 -4.35 -0.05 -22.40 16 6 C -0.09 -2.41 6.56 40.35 0.26 -2.14 16 7 N -0.54 -10.73 4.20 -171.92 -0.72 -11.45 16 8 H 0.43 6.71 3.41 -92.71 -0.32 6.40 16 9 C 0.06 0.96 7.13 41.35 0.29 1.25 16 10 C -0.09 -0.67 10.41 71.24 0.74 0.07 16 11 C -0.22 -4.53 10.66 22.01 0.23 -4.30 16 12 C -0.09 -2.44 6.21 -19.57 -0.12 -2.56 16 13 C -0.09 -2.30 9.91 71.23 0.71 -1.60 16 14 C 0.18 6.53 2.17 44.16 0.10 6.62 16 15 H 0.09 3.38 7.11 -2.39 -0.02 3.36 16 16 C -0.10 -3.53 4.01 28.61 0.11 -3.42 16 17 C -0.13 -4.46 5.74 29.39 0.17 -4.29 16 18 C 0.15 6.52 5.65 87.37 0.49 7.02 16 19 N -0.60 -30.31 2.27 -698.38 -1.58 -31.89 16 20 C -0.26 -14.17 9.42 84.03 0.79 -13.38 16 21 H 0.07 3.62 7.89 -2.91 -0.02 3.60 16 22 C -0.05 -2.64 4.80 84.86 0.41 -2.23 16 23 N -0.94 -55.78 11.21 21.65 0.24 -55.54 16 24 Si 0.96 44.18 29.59 68.60 2.03 46.21 16 25 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 26 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 C 0.20 10.10 4.68 86.49 0.40 10.51 16 29 C -0.12 -5.23 4.21 30.23 0.13 -5.11 16 30 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 32 H 0.06 1.00 6.45 -2.39 -0.02 0.99 16 33 H 0.09 1.67 5.21 -2.38 -0.01 1.66 16 34 H 0.09 2.08 7.88 -2.39 -0.02 2.06 16 35 H 0.09 0.51 8.14 -2.39 -0.02 0.49 16 36 H 0.08 0.40 8.14 -2.39 -0.02 0.38 16 37 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.06 1.81 6.37 -2.39 -0.02 1.80 16 42 H 0.05 1.76 8.04 -2.39 -0.02 1.74 16 43 H 0.05 1.92 6.42 -2.39 -0.02 1.90 16 44 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 45 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 46 H 0.03 1.26 8.06 -2.39 -0.02 1.24 16 47 H 0.04 1.83 7.99 -2.39 -0.02 1.81 16 48 H 0.25 14.36 8.31 -92.71 -0.77 13.59 16 49 H 0.04 2.36 6.45 -2.39 -0.02 2.34 16 50 H -0.01 -0.58 8.03 -2.39 -0.02 -0.60 16 51 H 0.05 2.08 7.97 -2.39 -0.02 2.06 16 52 H 0.05 2.28 6.60 -2.39 -0.02 2.26 16 Total: -1.00 -70.84 389.48 5.14 -65.70 By element: Atomic # 1 Polarization: 22.95 SS G_CDS: 0.59 Total: 23.55 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 6.46 Total: 6.44 kcal Atomic # 7 Polarization: -115.61 SS G_CDS: -3.89 Total: -119.50 kcal Atomic # 8 Polarization: -22.34 SS G_CDS: -0.05 Total: -22.40 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -70.84 5.14 -65.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998048290.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.460 kcal (2) G-P(sol) polarization free energy of solvation -70.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.699 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds