Wall clock time and date at job start Tue Mar 31 2020 18:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47341 * 2 1 4 4 C 1.34774 * 119.99773 * 275.57727 * 3 2 1 5 5 O 1.21634 * 119.99805 * 175.01167 * 4 3 2 6 6 C 1.47259 * 120.00214 * 355.00299 * 4 3 2 7 7 C 1.46686 * 126.94469 * 310.64308 * 6 4 3 8 8 C 1.34485 * 106.33562 * 179.97438 * 7 6 4 9 9 N 1.36445 * 108.85539 * 359.97438 * 8 7 6 10 10 C 1.46501 * 124.85325 * 179.97438 * 9 8 7 11 11 C 1.34659 * 110.29583 * 359.72374 * 9 8 7 12 12 C 1.50706 * 125.80006 * 180.30404 * 11 9 8 13 13 C 1.46505 * 120.00018 * 95.56787 * 3 2 1 14 14 H 1.08994 * 109.20226 * 0.64498 * 13 3 2 15 15 C 1.50131 * 109.20389 * 120.00277 * 13 3 2 16 16 C 1.52520 * 105.41282 * 218.02531 * 15 13 3 17 17 C 1.46237 * 114.28267 * 270.59407 * 16 15 13 18 18 N 1.50168 * 107.52994 * 58.40846 * 17 16 15 19 19 C 1.36937 * 120.53617 * 109.57037 * 18 17 16 20 20 H 1.08004 * 119.99891 * 223.54737 * 19 18 17 21 21 C 1.38804 * 120.00287 * 43.54605 * 19 18 17 22 22 N 1.31621 * 120.00224 * 175.93562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 355.93314 * 21 19 18 24 24 H 1.48497 * 109.47147 * 275.04507 * 23 21 19 25 25 H 1.48497 * 109.47098 * 35.04418 * 23 21 19 26 26 H 1.48504 * 109.47025 * 155.04383 * 23 21 19 27 27 C 1.43437 * 118.92898 * 289.84112 * 18 17 16 28 28 C 1.54411 * 116.38973 * 91.45262 * 27 18 17 29 29 H 1.09006 * 109.46871 * 60.00598 * 1 2 3 30 30 H 1.09006 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47420 * 300.00438 * 1 2 3 32 32 H 1.08995 * 109.47236 * 239.99311 * 2 1 3 33 33 H 1.09006 * 109.46871 * 119.99402 * 2 1 3 34 34 H 1.08007 * 126.83196 * 359.95242 * 7 6 4 35 35 H 1.07996 * 125.57352 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47556 * 90.01701 * 10 9 8 37 37 H 1.09000 * 109.47027 * 210.02630 * 10 9 8 38 38 H 1.09000 * 109.46505 * 330.01677 * 10 9 8 39 39 H 1.09005 * 109.46822 * 270.16836 * 12 11 9 40 40 H 1.08993 * 109.47353 * 30.16839 * 12 11 9 41 41 H 1.08994 * 109.47056 * 150.17032 * 12 11 9 42 42 H 1.09003 * 110.24438 * 99.05537 * 15 13 3 43 43 H 1.08995 * 110.25201 * 337.00529 * 15 13 3 44 44 H 1.09001 * 108.52345 * 149.35457 * 16 15 13 45 45 H 1.08997 * 108.52558 * 31.83945 * 16 15 13 46 46 H 1.09002 * 109.84391 * 298.90741 * 17 16 15 47 47 H 1.09000 * 109.90449 * 177.94605 * 17 16 15 48 48 H 0.97002 * 119.99731 * 179.97438 * 22 21 19 49 49 H 1.08993 * 108.16338 * 213.03082 * 27 18 17 50 50 H 1.08998 * 108.16078 * 329.60613 * 27 18 17 51 51 H 1.08992 * 109.44363 * 198.44274 * 28 27 18 52 52 H 1.09006 * 109.23106 * 78.73848 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1360 2.0543 -1.1617 5 8 2.4542 3.2282 -1.1548 6 6 1.8796 1.3684 -2.4393 7 6 2.4297 0.0801 -2.8743 8 6 1.9259 -0.1520 -4.0995 9 7 1.1138 0.8881 -4.4466 10 6 0.3844 0.9943 -5.7127 11 6 1.0744 1.8004 -3.4570 12 6 0.2811 3.0817 -3.4703 13 6 2.3786 2.0308 1.2628 14 1 2.2275 1.3289 2.0828 15 6 3.8244 2.4327 1.2165 16 6 4.3622 2.1736 2.6200 17 6 4.2285 3.3073 3.5340 18 7 2.7693 3.6525 3.6160 19 6 2.0585 3.4029 4.7596 20 1 1.0699 2.9725 4.6977 21 6 2.6085 3.7032 5.9981 22 7 1.8956 3.5383 7.0922 23 14 4.3605 4.3411 6.1122 24 1 5.3045 3.1949 6.1286 25 1 4.6504 5.2042 4.9391 26 1 4.5194 5.1312 7.3595 27 6 2.1308 4.2424 2.4752 28 6 1.4705 3.2665 1.4772 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1052 -0.5555 -2.3210 35 1 2.1305 -1.0198 -4.7089 36 1 -0.5985 0.5355 -5.6055 37 1 0.2680 2.0451 -5.9779 38 1 0.9413 0.4813 -6.4969 39 1 0.8882 3.8804 -3.8965 40 1 -0.6170 2.9468 -4.0730 41 1 -0.0015 3.3446 -2.4510 42 1 3.9141 3.4900 0.9673 43 1 4.3617 1.8251 0.4884 44 1 5.4179 1.9131 2.5437 45 1 3.8290 1.3225 3.0436 46 1 4.7894 4.1597 3.1508 47 1 4.6000 3.0336 4.5215 48 1 2.2802 3.7478 7.9578 49 1 1.3616 4.9270 2.8325 50 1 2.8744 4.8279 1.9345 51 1 1.3166 3.7717 0.5237 52 1 0.5083 2.9433 1.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998116616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:33 Heat of formation + Delta-G solvation = 54.777092 kcal Electronic energy + Delta-G solvation = -30774.463881 eV Core-core repulsion = 26969.363128 eV Total energy + Delta-G solvation = -3805.100754 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.52201 -39.74180 -37.50619 -35.54368 -33.45636 -32.70270 -31.83409 -31.62937 -31.19401 -29.48678 -27.11747 -26.49540 -25.93427 -24.48260 -23.55033 -22.91296 -21.42981 -20.65446 -20.09326 -19.08233 -18.06655 -16.98993 -16.65069 -15.99354 -15.85865 -15.64944 -15.48885 -14.68764 -14.44926 -14.25625 -13.83719 -13.65873 -13.46662 -13.33774 -13.14930 -13.07653 -12.95661 -12.74541 -12.63744 -12.56855 -12.34608 -12.19935 -12.15521 -11.73967 -11.68776 -11.52088 -11.35422 -11.08045 -10.98657 -10.86895 -10.28645 -10.10734 -10.03634 -9.69620 -9.53495 -9.28536 -9.14385 -8.67315 -8.48544 -8.28433 -8.12522 -6.62657 -5.86275 -3.41687 1.89939 2.36242 2.62132 3.28185 3.35296 3.51452 3.54742 3.56312 4.39996 4.57521 4.58434 4.73324 4.74749 4.95417 4.98402 5.07919 5.09459 5.13024 5.34891 5.41103 5.41635 5.42571 5.47419 5.55563 5.65137 5.72775 5.77918 5.83119 5.87687 5.91862 5.99393 6.04730 6.07354 6.15125 6.30608 6.35625 6.47173 6.52290 6.57457 6.66174 6.68729 6.76804 6.87487 6.94496 6.98846 7.05707 7.09293 7.09862 7.22463 7.85318 8.22132 8.53918 8.63285 9.06975 9.79400 10.29076 11.27598 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.003024 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.141483 B = 9256.359938 C = 9286.301489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.590 3.410 5 O -0.536 6.536 6 C -0.216 4.216 7 C -0.168 4.168 8 C -0.018 4.018 9 N -0.448 5.448 10 C 0.070 3.930 11 C 0.081 3.919 12 C -0.087 4.087 13 C 0.163 3.837 14 H 0.087 0.913 15 C -0.113 4.113 16 C -0.132 4.132 17 C 0.115 3.885 18 N -0.605 5.605 19 C -0.262 4.262 20 H 0.078 0.922 21 C 0.030 3.970 22 N -0.915 5.915 23 Si 0.904 3.096 24 H -0.289 1.289 25 H -0.267 1.267 26 H -0.308 1.308 27 C 0.167 3.833 28 C -0.151 4.151 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.074 0.926 34 H 0.144 0.856 35 H 0.164 0.836 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.084 0.916 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.084 0.916 42 H 0.077 0.923 43 H 0.055 0.945 44 H 0.043 0.957 45 H 0.062 0.938 46 H 0.038 0.962 47 H 0.063 0.937 48 H 0.262 0.738 49 H 0.046 0.954 50 H 0.030 0.970 51 H 0.074 0.926 52 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.260 -9.244 -25.977 27.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.023 4.023 3 N -0.337 5.337 4 C 0.379 3.621 5 O -0.414 6.414 6 C -0.226 4.226 7 C -0.192 4.192 8 C -0.144 4.144 9 N -0.125 5.125 10 C -0.072 4.072 11 C -0.033 4.033 12 C -0.144 4.144 13 C 0.061 3.939 14 H 0.105 0.895 15 C -0.151 4.151 16 C -0.171 4.171 17 C -0.008 4.008 18 N -0.329 5.329 19 C -0.391 4.391 20 H 0.095 0.905 21 C -0.169 4.169 22 N -0.557 5.557 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.192 1.192 26 H -0.237 1.237 27 C 0.038 3.962 28 C -0.193 4.193 29 H 0.072 0.928 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.102 0.898 33 H 0.093 0.907 34 H 0.162 0.838 35 H 0.182 0.818 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.103 0.897 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.103 0.897 42 H 0.095 0.905 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.081 0.919 46 H 0.056 0.944 47 H 0.081 0.919 48 H 0.072 0.928 49 H 0.064 0.936 50 H 0.049 0.951 51 H 0.093 0.907 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.273 -8.585 -26.061 27.532 hybrid contribution 0.885 -0.224 0.167 0.928 sum -1.388 -8.809 -25.894 27.387 Atomic orbital electron populations 1.22145 0.96319 1.01560 1.02332 1.21689 0.94386 0.83108 1.03074 1.48306 1.64956 1.13783 1.06669 1.17373 0.76610 0.85564 0.82576 1.90747 1.47561 1.15739 1.87347 1.20229 1.07535 0.98472 0.96335 1.21896 1.04789 0.96452 0.96105 1.21621 0.99923 0.94332 0.98560 1.43424 1.37428 1.17247 1.14418 1.22042 0.97094 1.04112 0.83969 1.20131 1.01558 0.93353 0.88306 1.20384 0.97816 0.92035 1.04197 1.21270 0.94376 0.95186 0.83045 0.89466 1.21298 0.94947 1.02646 0.96191 1.20913 0.99518 1.01028 0.95644 1.20844 0.87392 0.95029 0.97515 1.44255 1.04635 1.72203 1.11803 1.18771 1.00759 1.36869 0.82745 0.90495 1.25528 0.98301 0.97159 0.95924 1.69774 1.36443 1.51761 0.97762 0.86663 0.85068 0.78431 0.76133 1.21715 1.19152 1.23737 1.20140 0.95810 0.92577 0.87640 1.23171 0.98296 0.97135 1.00653 0.92824 0.92198 0.92212 0.89806 0.90739 0.83798 0.81844 0.90897 0.89811 0.89748 0.90316 0.91897 0.89749 0.90454 0.92643 0.93863 0.91894 0.94383 0.91945 0.92833 0.93584 0.95123 0.90721 0.93298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.93 10.19 37.15 0.38 -1.55 16 2 C 0.10 1.23 5.91 -4.05 -0.02 1.21 16 3 N -0.60 -9.24 2.30 -167.95 -0.39 -9.63 16 4 C 0.59 9.52 6.35 -12.60 -0.08 9.44 16 5 O -0.54 -10.27 14.13 5.25 0.07 -10.20 16 6 C -0.22 -2.89 5.13 -103.35 -0.53 -3.42 16 7 C -0.17 -1.82 9.04 -37.50 -0.34 -2.16 16 8 C -0.02 -0.16 11.34 -16.83 -0.19 -0.35 16 9 N -0.45 -3.96 3.09 -119.88 -0.37 -4.33 16 10 C 0.07 0.32 10.60 59.85 0.63 0.96 16 11 C 0.08 0.93 6.89 -81.88 -0.56 0.37 16 12 C -0.09 -0.87 9.51 36.01 0.34 -0.53 16 13 C 0.16 2.89 2.30 -68.38 -0.16 2.74 16 14 H 0.09 1.65 6.38 -51.93 -0.33 1.32 16 15 C -0.11 -2.03 4.28 -28.40 -0.12 -2.15 16 16 C -0.13 -2.50 5.20 -30.19 -0.16 -2.66 16 17 C 0.12 2.57 3.83 -5.20 -0.02 2.55 16 18 N -0.61 -14.79 2.28 -175.40 -0.40 -15.19 16 19 C -0.26 -7.46 10.06 -15.06 -0.15 -7.61 16 20 H 0.08 2.37 8.06 -52.48 -0.42 1.94 16 21 C 0.03 0.90 5.50 -17.43 -0.10 0.80 16 22 N -0.92 -28.50 13.97 55.49 0.78 -27.72 16 23 Si 0.90 23.19 24.46 -169.99 -4.16 19.03 16 24 H -0.29 -7.15 6.70 56.52 0.38 -6.77 16 25 H -0.27 -6.65 6.14 56.52 0.35 -6.30 16 26 H -0.31 -8.06 7.11 56.52 0.40 -7.66 16 27 C 0.17 3.65 5.13 -4.92 -0.03 3.62 16 28 C -0.15 -2.93 5.77 -25.02 -0.14 -3.07 16 29 H 0.05 0.65 7.95 -51.93 -0.41 0.24 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.91 4.50 -51.93 -0.23 0.67 16 33 H 0.07 0.88 7.79 -51.93 -0.40 0.48 16 34 H 0.14 1.39 7.33 -52.48 -0.38 1.00 16 35 H 0.16 0.90 8.06 -52.49 -0.42 0.48 16 36 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 37 H 0.08 0.33 7.51 -51.93 -0.39 -0.06 16 38 H 0.08 0.24 8.13 -51.93 -0.42 -0.18 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.45 7.59 -51.93 -0.39 0.06 16 41 H 0.08 0.99 7.93 -51.93 -0.41 0.58 16 42 H 0.08 1.53 6.07 -51.93 -0.31 1.21 16 43 H 0.05 0.95 7.86 -51.93 -0.41 0.54 16 44 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 45 H 0.06 1.23 6.93 -51.93 -0.36 0.87 16 46 H 0.04 0.83 7.59 -51.93 -0.39 0.43 16 47 H 0.06 1.50 3.47 -51.93 -0.18 1.32 16 48 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 49 H 0.05 1.05 8.00 -51.93 -0.42 0.63 16 50 H 0.03 0.65 6.89 -51.93 -0.36 0.30 16 51 H 0.07 1.46 5.84 -51.93 -0.30 1.15 16 52 H 0.05 0.97 8.14 -51.93 -0.42 0.54 16 LS Contribution 388.25 15.07 5.85 5.85 Total: -1.00 -34.19 388.25 -8.57 -42.77 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -8.71 Total: 1.23 kcal Atomic # 6 Polarization: -0.57 SS G_CDS: -1.24 Total: -1.81 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.38 Total: -56.87 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.07 Total: -10.20 kcal Atomic # 14 Polarization: 23.19 SS G_CDS: -4.16 Total: 19.03 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.19 -8.57 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998116616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.544 kcal (2) G-P(sol) polarization free energy of solvation -34.193 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds