Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47341 * 2 1 4 4 C 1.34774 * 119.99773 * 275.57727 * 3 2 1 5 5 O 1.21634 * 119.99805 * 175.01167 * 4 3 2 6 6 C 1.47259 * 120.00214 * 355.00299 * 4 3 2 7 7 C 1.46686 * 126.94469 * 310.64308 * 6 4 3 8 8 C 1.34485 * 106.33562 * 179.97438 * 7 6 4 9 9 N 1.36445 * 108.85539 * 359.97438 * 8 7 6 10 10 C 1.46501 * 124.85325 * 179.97438 * 9 8 7 11 11 C 1.34659 * 110.29583 * 359.72374 * 9 8 7 12 12 C 1.50706 * 125.80006 * 180.30404 * 11 9 8 13 13 C 1.46505 * 120.00018 * 95.56787 * 3 2 1 14 14 H 1.08994 * 109.20226 * 0.64498 * 13 3 2 15 15 C 1.50131 * 109.20389 * 120.00277 * 13 3 2 16 16 C 1.52520 * 105.41282 * 218.02531 * 15 13 3 17 17 C 1.46237 * 114.28267 * 270.59407 * 16 15 13 18 18 N 1.50168 * 107.52994 * 58.40846 * 17 16 15 19 19 C 1.36937 * 120.53617 * 109.57037 * 18 17 16 20 20 H 1.08004 * 119.99891 * 223.54737 * 19 18 17 21 21 C 1.38804 * 120.00287 * 43.54605 * 19 18 17 22 22 N 1.31621 * 120.00224 * 175.93562 * 21 19 18 23 23 Si 1.86800 * 119.99838 * 355.93314 * 21 19 18 24 24 H 1.48497 * 109.47147 * 275.04507 * 23 21 19 25 25 H 1.48497 * 109.47098 * 35.04418 * 23 21 19 26 26 H 1.48504 * 109.47025 * 155.04383 * 23 21 19 27 27 C 1.43437 * 118.92898 * 289.84112 * 18 17 16 28 28 C 1.54411 * 116.38973 * 91.45262 * 27 18 17 29 29 H 1.09006 * 109.46871 * 60.00598 * 1 2 3 30 30 H 1.09006 * 109.47275 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47420 * 300.00438 * 1 2 3 32 32 H 1.08995 * 109.47236 * 239.99311 * 2 1 3 33 33 H 1.09006 * 109.46871 * 119.99402 * 2 1 3 34 34 H 1.08007 * 126.83196 * 359.95242 * 7 6 4 35 35 H 1.07996 * 125.57352 * 179.97438 * 8 7 6 36 36 H 1.08998 * 109.47556 * 90.01701 * 10 9 8 37 37 H 1.09000 * 109.47027 * 210.02630 * 10 9 8 38 38 H 1.09000 * 109.46505 * 330.01677 * 10 9 8 39 39 H 1.09005 * 109.46822 * 270.16836 * 12 11 9 40 40 H 1.08993 * 109.47353 * 30.16839 * 12 11 9 41 41 H 1.08994 * 109.47056 * 150.17032 * 12 11 9 42 42 H 1.09003 * 110.24438 * 99.05537 * 15 13 3 43 43 H 1.08995 * 110.25201 * 337.00529 * 15 13 3 44 44 H 1.09001 * 108.52345 * 149.35457 * 16 15 13 45 45 H 1.08997 * 108.52558 * 31.83945 * 16 15 13 46 46 H 1.09002 * 109.84391 * 298.90741 * 17 16 15 47 47 H 1.09000 * 109.90449 * 177.94605 * 17 16 15 48 48 H 0.97002 * 119.99731 * 179.97438 * 22 21 19 49 49 H 1.08993 * 108.16338 * 213.03082 * 27 18 17 50 50 H 1.08998 * 108.16078 * 329.60613 * 27 18 17 51 51 H 1.08992 * 109.44363 * 198.44274 * 28 27 18 52 52 H 1.09006 * 109.23106 * 78.73848 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1360 2.0543 -1.1617 5 8 2.4542 3.2282 -1.1548 6 6 1.8796 1.3684 -2.4393 7 6 2.4297 0.0801 -2.8743 8 6 1.9259 -0.1520 -4.0995 9 7 1.1138 0.8881 -4.4466 10 6 0.3844 0.9943 -5.7127 11 6 1.0744 1.8004 -3.4570 12 6 0.2811 3.0817 -3.4703 13 6 2.3786 2.0308 1.2628 14 1 2.2275 1.3289 2.0828 15 6 3.8244 2.4327 1.2165 16 6 4.3622 2.1736 2.6200 17 6 4.2285 3.3073 3.5340 18 7 2.7693 3.6525 3.6160 19 6 2.0585 3.4029 4.7596 20 1 1.0699 2.9725 4.6977 21 6 2.6085 3.7032 5.9981 22 7 1.8956 3.5383 7.0922 23 14 4.3605 4.3411 6.1122 24 1 5.3045 3.1949 6.1286 25 1 4.6504 5.2042 4.9391 26 1 4.5194 5.1312 7.3595 27 6 2.1308 4.2424 2.4752 28 6 1.4705 3.2665 1.4772 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 3.1052 -0.5555 -2.3210 35 1 2.1305 -1.0198 -4.7089 36 1 -0.5985 0.5355 -5.6055 37 1 0.2680 2.0451 -5.9779 38 1 0.9413 0.4813 -6.4969 39 1 0.8882 3.8804 -3.8965 40 1 -0.6170 2.9468 -4.0730 41 1 -0.0015 3.3446 -2.4510 42 1 3.9141 3.4900 0.9673 43 1 4.3617 1.8251 0.4884 44 1 5.4179 1.9131 2.5437 45 1 3.8290 1.3225 3.0436 46 1 4.7894 4.1597 3.1508 47 1 4.6000 3.0336 4.5215 48 1 2.2802 3.7478 7.9578 49 1 1.3616 4.9270 2.8325 50 1 2.8744 4.8279 1.9345 51 1 1.3166 3.7717 0.5237 52 1 0.5083 2.9433 1.8744 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998116616.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = 34.892037 kcal Electronic energy + Delta-G solvation = -30775.326162 eV Core-core repulsion = 26969.363128 eV Total energy + Delta-G solvation = -3805.963034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.31704 -41.03389 -39.10187 -36.85939 -35.05933 -33.75683 -33.38170 -32.92431 -32.53852 -30.74183 -28.31725 -27.41185 -27.16283 -26.13308 -24.80614 -24.42663 -22.41786 -22.21773 -21.40094 -20.34124 -19.06891 -18.61236 -17.89294 -17.64154 -17.12337 -16.83710 -16.42136 -16.17086 -15.96234 -15.32998 -15.30493 -14.93539 -14.84903 -14.58461 -14.32168 -14.28716 -13.98338 -13.91346 -13.76128 -13.65686 -13.44646 -13.36998 -13.21504 -13.10852 -13.01778 -12.82333 -12.74441 -12.56009 -12.45839 -12.18692 -12.08443 -11.72221 -11.63640 -11.44628 -11.36514 -11.13626 -10.67983 -10.51146 -9.60921 -9.29391 -9.01644 -8.68553 -8.13189 -5.68333 1.00901 1.30424 1.42431 1.52912 1.58841 1.92206 2.21497 2.42789 2.44498 3.12758 3.23704 3.67422 3.87060 3.96532 4.01881 4.06482 4.12439 4.17527 4.27731 4.36450 4.37878 4.42717 4.43085 4.48393 4.50782 4.60584 4.63338 4.69554 4.74500 4.75954 4.77074 4.87542 4.91858 4.95796 4.98589 4.99902 5.05777 5.12005 5.13808 5.22351 5.25201 5.31814 5.33919 5.39933 5.47721 5.82879 5.88821 6.00770 6.19268 6.21987 6.46105 6.67100 6.98730 7.41542 7.60457 8.12328 9.03068 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.024814 B = 0.003024 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1128.141483 B = 9256.359938 C = 9286.301489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.098 3.902 3 N -0.605 5.605 4 C 0.588 3.412 5 O -0.577 6.577 6 C -0.251 4.251 7 C -0.188 4.188 8 C -0.001 4.001 9 N -0.443 5.443 10 C 0.061 3.939 11 C 0.073 3.927 12 C -0.084 4.084 13 C 0.170 3.830 14 H 0.075 0.925 15 C -0.100 4.100 16 C -0.127 4.127 17 C 0.113 3.887 18 N -0.614 5.614 19 C -0.252 4.252 20 H 0.038 0.962 21 C -0.026 4.026 22 N -0.961 5.961 23 Si 0.966 3.034 24 H -0.270 1.270 25 H -0.255 1.255 26 H -0.315 1.315 27 C 0.167 3.833 28 C -0.137 4.137 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.035 0.965 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.152 0.848 35 H 0.202 0.798 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.108 0.892 39 H 0.076 0.924 40 H 0.091 0.909 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.069 0.931 44 H 0.074 0.926 45 H 0.055 0.945 46 H 0.050 0.950 47 H 0.051 0.949 48 H 0.262 0.738 49 H 0.027 0.973 50 H 0.040 0.960 51 H 0.073 0.927 52 H 0.035 0.965 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.910 -11.012 -29.359 31.370 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.024 4.024 3 N -0.336 5.336 4 C 0.379 3.621 5 O -0.458 6.458 6 C -0.261 4.261 7 C -0.212 4.212 8 C -0.128 4.128 9 N -0.119 5.119 10 C -0.079 4.079 11 C -0.044 4.044 12 C -0.141 4.141 13 C 0.067 3.933 14 H 0.093 0.907 15 C -0.138 4.138 16 C -0.166 4.166 17 C -0.009 4.009 18 N -0.339 5.339 19 C -0.382 4.382 20 H 0.056 0.944 21 C -0.221 4.221 22 N -0.605 5.605 23 Si 0.796 3.204 24 H -0.197 1.197 25 H -0.179 1.179 26 H -0.245 1.245 27 C 0.039 3.961 28 C -0.179 4.179 29 H 0.066 0.934 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.170 0.830 35 H 0.219 0.781 36 H 0.106 0.894 37 H 0.109 0.891 38 H 0.126 0.874 39 H 0.095 0.905 40 H 0.110 0.890 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.074 0.926 46 H 0.068 0.932 47 H 0.069 0.931 48 H 0.071 0.929 49 H 0.046 0.954 50 H 0.058 0.942 51 H 0.092 0.908 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -0.933 -10.394 -29.507 31.298 hybrid contribution 0.340 0.298 1.088 1.178 sum -0.593 -10.096 -28.419 30.165 Atomic orbital electron populations 1.22067 0.95933 1.02709 1.00839 1.21900 0.94655 0.81547 1.04303 1.48304 1.64854 1.14833 1.05597 1.17853 0.75531 0.85174 0.83558 1.90708 1.49497 1.17553 1.87997 1.20154 1.09969 1.00242 0.95726 1.22044 1.05918 0.95789 0.97423 1.22192 0.98024 0.94676 0.97925 1.43716 1.36949 1.16329 1.14914 1.22385 0.97764 1.05265 0.82530 1.20253 1.01353 0.94046 0.88746 1.20344 0.98940 0.91687 1.03148 1.20990 0.94097 0.94083 0.84152 0.90678 1.21161 0.94891 1.01826 0.95901 1.20790 1.01450 0.99187 0.95177 1.20934 0.85408 0.96752 0.97799 1.44304 1.05629 1.72710 1.11240 1.18587 0.99758 1.35491 0.84342 0.94407 1.26243 1.02595 0.97889 0.95414 1.69919 1.38495 1.53740 0.98368 0.85655 0.80387 0.78369 0.75970 1.19709 1.17882 1.24481 1.20175 0.95547 0.92983 0.87360 1.22951 0.97828 0.97567 0.99522 0.93380 0.89687 0.94542 0.87670 0.90298 0.83024 0.78099 0.89437 0.89138 0.87367 0.90540 0.88984 0.92300 0.91987 0.91280 0.90781 0.92643 0.93173 0.93123 0.92866 0.95408 0.94168 0.90813 0.94637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.58 10.19 71.98 0.73 -2.84 16 2 C 0.10 2.31 5.91 86.38 0.51 2.82 16 3 N -0.60 -18.42 2.30 -803.52 -1.85 -20.27 16 4 C 0.59 18.99 6.35 86.62 0.55 19.54 16 5 O -0.58 -22.54 14.13 -4.14 -0.06 -22.60 16 6 C -0.25 -6.46 5.13 -19.04 -0.10 -6.56 16 7 C -0.19 -3.62 9.04 23.62 0.21 -3.41 16 8 C 0.00 -0.02 11.34 83.12 0.94 0.93 16 9 N -0.44 -6.40 3.09 -533.20 -1.65 -8.04 16 10 C 0.06 0.32 10.60 127.77 1.35 1.68 16 11 C 0.07 1.56 6.89 41.78 0.29 1.85 16 12 C -0.08 -1.62 9.51 71.24 0.68 -0.94 16 13 C 0.17 6.09 2.30 44.70 0.10 6.19 16 14 H 0.08 2.89 6.38 -2.39 -0.02 2.87 16 15 C -0.10 -3.50 4.28 29.51 0.13 -3.38 16 16 C -0.13 -4.61 5.20 28.35 0.15 -4.47 16 17 C 0.11 4.90 3.83 83.58 0.32 5.22 16 18 N -0.61 -30.40 2.28 -708.85 -1.61 -32.01 16 19 C -0.25 -14.80 10.06 84.03 0.85 -13.95 16 20 H 0.04 2.48 8.06 -2.91 -0.02 2.46 16 21 C -0.03 -1.56 5.50 84.86 0.47 -1.09 16 22 N -0.96 -61.68 13.97 21.65 0.30 -61.38 16 23 Si 0.97 48.01 24.46 68.60 1.68 49.69 16 24 H -0.27 -12.52 6.70 99.48 0.67 -11.86 16 25 H -0.25 -12.02 6.14 99.48 0.61 -11.41 16 26 H -0.32 -15.94 7.11 99.48 0.71 -15.23 16 27 C 0.17 7.51 5.13 87.42 0.45 7.96 16 28 C -0.14 -5.54 5.77 31.70 0.18 -5.35 16 29 H 0.05 1.14 7.95 -2.38 -0.02 1.12 16 30 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.11 2.07 4.50 -2.39 -0.01 2.06 16 33 H 0.08 1.79 7.79 -2.38 -0.02 1.77 16 34 H 0.15 2.54 7.33 -2.91 -0.02 2.52 16 35 H 0.20 1.13 8.06 -2.91 -0.02 1.11 16 36 H 0.09 0.27 8.14 -2.39 -0.02 0.25 16 37 H 0.09 0.39 7.51 -2.39 -0.02 0.37 16 38 H 0.11 0.10 8.13 -2.39 -0.02 0.08 16 39 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 40 H 0.09 1.16 7.59 -2.39 -0.02 1.14 16 41 H 0.06 1.43 7.93 -2.39 -0.02 1.41 16 42 H 0.06 2.40 6.07 -2.39 -0.01 2.39 16 43 H 0.07 2.25 7.86 -2.39 -0.02 2.23 16 44 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 45 H 0.05 2.11 6.93 -2.39 -0.02 2.10 16 46 H 0.05 2.06 7.59 -2.39 -0.02 2.05 16 47 H 0.05 2.33 3.47 -2.39 -0.01 2.32 16 48 H 0.26 15.97 8.31 -92.71 -0.77 15.20 16 49 H 0.03 1.32 8.00 -2.39 -0.02 1.30 16 50 H 0.04 1.73 6.89 -2.39 -0.02 1.71 16 51 H 0.07 3.01 5.84 -2.39 -0.01 2.99 16 52 H 0.03 1.48 8.14 -2.38 -0.02 1.46 16 Total: -1.00 -77.24 388.25 5.39 -71.86 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: 0.77 Total: 18.57 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 7.81 Total: 4.19 kcal Atomic # 7 Polarization: -116.89 SS G_CDS: -4.81 Total: -121.70 kcal Atomic # 8 Polarization: -22.54 SS G_CDS: -0.06 Total: -22.60 kcal Atomic # 14 Polarization: 48.01 SS G_CDS: 1.68 Total: 49.69 kcal Total: -77.24 5.39 -71.86 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998116616.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.748 kcal (2) G-P(sol) polarization free energy of solvation -77.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.503 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.856 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds