Wall clock time and date at job start Tue Mar 31 2020 18:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46992 * 2 1 4 4 C 1.34774 * 119.99814 * 270.08578 * 3 2 1 5 5 O 1.21635 * 120.00078 * 185.98117 * 4 3 2 6 6 C 1.47268 * 120.00248 * 5.98085 * 4 3 2 7 7 C 1.46683 * 126.93987 * 7.40429 * 6 4 3 8 8 C 1.34481 * 106.33468 * 179.83070 * 7 6 4 9 9 N 1.36456 * 108.85368 * 0.43411 * 8 7 6 10 10 C 1.46501 * 124.85146 * 179.69214 * 9 8 7 11 11 C 1.34658 * 110.29648 * 359.71140 * 9 8 7 12 12 C 1.50699 * 125.80154 * 179.97438 * 11 9 8 13 13 C 1.46493 * 120.00125 * 90.07977 * 3 2 1 14 14 H 1.09000 * 109.49126 * 0.05053 * 13 3 2 15 15 C 1.52570 * 109.49470 * 240.00208 * 13 3 2 16 16 C 1.47088 * 114.32766 * 155.00083 * 15 13 3 17 17 C 1.54869 * 110.32455 * 62.80262 * 16 15 13 18 18 N 1.44573 * 109.59755 * 288.73458 * 17 16 15 19 19 C 1.36932 * 118.64402 * 270.72027 * 18 17 16 20 20 H 1.08001 * 119.99924 * 27.20352 * 19 18 17 21 21 C 1.38813 * 120.00492 * 207.20018 * 19 18 17 22 22 N 1.31612 * 119.99806 * 17.67909 * 21 19 18 23 23 Si 1.86805 * 120.00098 * 197.68243 * 21 19 18 24 24 H 1.48497 * 109.47333 * 94.98311 * 23 21 19 25 25 H 1.48501 * 109.46843 * 214.98237 * 23 21 19 26 26 H 1.48497 * 109.47032 * 334.98001 * 23 21 19 27 27 C 1.47607 * 122.71517 * 90.72496 * 18 17 16 28 28 C 1.50881 * 109.50778 * 120.10551 * 13 3 2 29 29 H 1.08994 * 109.47406 * 60.00294 * 1 2 3 30 30 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46880 * 299.99588 * 1 2 3 32 32 H 1.09001 * 109.47396 * 240.00331 * 2 1 3 33 33 H 1.08994 * 109.47406 * 119.99706 * 2 1 3 34 34 H 1.08006 * 126.83623 * 359.97438 * 7 6 4 35 35 H 1.08000 * 125.57773 * 180.15079 * 8 7 6 36 36 H 1.08998 * 109.46966 * 270.02643 * 10 9 8 37 37 H 1.09000 * 109.46958 * 30.01856 * 10 9 8 38 38 H 1.08991 * 109.46893 * 150.02282 * 10 9 8 39 39 H 1.08993 * 109.47198 * 270.02740 * 12 11 9 40 40 H 1.08998 * 109.46752 * 30.02709 * 12 11 9 41 41 H 1.09001 * 109.46841 * 150.02408 * 12 11 9 42 42 H 1.09004 * 108.51034 * 33.74313 * 15 13 3 43 43 H 1.09004 * 108.38971 * 276.17139 * 15 13 3 44 44 H 1.08993 * 109.32942 * 302.54111 * 16 15 13 45 45 H 1.09002 * 109.18904 * 182.97674 * 16 15 13 46 46 H 1.09005 * 109.44754 * 48.77265 * 17 16 15 47 47 H 1.08994 * 109.44947 * 168.68859 * 17 16 15 48 48 H 0.97000 * 120.00268 * 180.02562 * 22 21 19 49 49 H 1.08995 * 108.94974 * 197.18033 * 27 18 17 50 50 H 1.09006 * 108.87688 * 78.50519 * 27 18 17 51 51 H 1.09008 * 109.36572 * 332.05540 * 28 13 3 52 52 H 1.09002 * 109.37213 * 91.67233 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2413 2.0171 -1.1672 5 8 2.7485 3.1227 -1.1703 6 6 1.8708 1.3735 -2.4389 7 6 1.1209 0.1244 -2.6091 8 6 1.0141 -0.0751 -3.9347 9 7 1.6454 0.9443 -4.5863 10 6 1.7474 1.0712 -6.0422 11 6 2.1615 1.8166 -3.6997 12 6 2.9294 3.0681 -4.0392 13 6 2.2642 2.0713 1.2687 14 1 2.0301 1.4031 2.0974 15 6 1.3823 3.3135 1.3518 16 6 1.0886 3.7575 2.7230 17 6 2.3950 4.1656 3.4477 18 7 3.1776 2.9852 3.7381 19 6 2.9674 2.3337 4.9240 20 1 2.0037 2.3911 5.4083 21 6 3.9928 1.5994 5.5039 22 7 5.2383 1.7976 5.1276 23 14 3.6048 0.3299 6.8183 24 1 3.4781 -1.0098 6.1904 25 1 4.6999 0.3052 7.8210 26 1 2.3282 0.6854 7.4883 27 6 4.1938 2.4533 2.8091 28 6 3.7141 2.4811 1.3466 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 0.7300 -0.5081 -1.8257 35 1 0.5148 -0.9084 -4.4066 36 1 2.6503 0.5682 -6.3884 37 1 0.8751 0.6136 -6.5088 38 1 1.7927 2.1261 -6.3126 39 1 3.9920 2.8352 -4.1065 40 1 2.5819 3.4594 -4.9953 41 1 2.7695 3.8146 -3.2612 42 1 0.4396 3.1032 0.8466 43 1 1.8823 4.1260 0.8245 44 1 0.6110 2.9452 3.2706 45 1 0.4142 4.6130 2.6858 46 1 2.9709 4.8347 2.8082 47 1 2.1492 4.6764 4.3786 48 1 5.9548 1.2843 5.5325 49 1 4.4234 1.4246 3.0868 50 1 5.0996 3.0535 2.8960 51 1 4.3169 1.7917 0.7553 52 1 3.8267 3.4895 0.9484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998116619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:37 Heat of formation + Delta-G solvation = 59.359182 kcal Electronic energy + Delta-G solvation = -30857.884312 eV Core-core repulsion = 27052.982253 eV Total energy + Delta-G solvation = -3804.902059 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.51501 -39.57419 -37.13210 -35.66537 -33.66336 -32.66213 -31.60734 -31.45815 -30.58513 -29.53212 -27.05344 -26.32661 -25.68323 -23.91359 -23.27015 -23.07633 -21.47297 -20.73923 -19.41921 -19.06124 -18.09735 -16.86221 -16.48429 -16.00891 -15.72661 -15.58321 -14.87839 -14.55621 -14.42856 -14.15041 -13.94544 -13.55128 -13.33546 -13.15799 -13.05031 -12.91226 -12.77878 -12.70314 -12.34360 -12.21660 -12.15405 -12.00510 -11.78861 -11.64178 -11.44421 -11.18289 -11.01106 -10.89451 -10.77078 -10.65593 -10.22027 -10.09428 -9.93230 -9.68484 -9.55147 -9.42621 -9.04966 -8.58230 -8.30394 -8.26362 -7.99197 -6.53877 -5.68485 -3.11685 1.85474 2.39138 2.68554 3.42013 3.49624 3.50925 3.54668 3.85358 4.44486 4.58005 4.66859 4.76725 4.82143 5.00042 5.07057 5.15021 5.22526 5.37984 5.42782 5.48013 5.54104 5.59780 5.61569 5.69492 5.75958 5.81640 5.85342 5.95069 5.97918 6.11592 6.17482 6.22728 6.31795 6.39068 6.56239 6.61421 6.67302 6.75768 6.77767 6.79774 6.90498 6.99499 7.04833 7.08093 7.15269 7.22089 7.36558 7.56357 7.80275 7.92001 8.02981 8.57526 8.79001 9.34303 10.02505 10.49200 11.38599 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.003245 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.888686 B = 8627.885697 C = 9041.045442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 N -0.602 5.602 4 C 0.588 3.412 5 O -0.545 6.545 6 C -0.228 4.228 7 C -0.187 4.187 8 C -0.028 4.028 9 N -0.448 5.448 10 C 0.068 3.932 11 C 0.098 3.902 12 C -0.094 4.094 13 C 0.167 3.833 14 H 0.094 0.906 15 C -0.108 4.108 16 C -0.141 4.141 17 C 0.157 3.843 18 N -0.591 5.591 19 C -0.256 4.256 20 H 0.064 0.936 21 C 0.005 3.995 22 N -0.901 5.901 23 Si 0.896 3.104 24 H -0.289 1.289 25 H -0.293 1.293 26 H -0.279 1.279 27 C 0.182 3.818 28 C -0.141 4.141 29 H 0.066 0.934 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.170 0.830 35 H 0.163 0.837 36 H 0.073 0.927 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.074 0.926 40 H 0.058 0.942 41 H 0.105 0.895 42 H 0.039 0.961 43 H 0.063 0.937 44 H 0.057 0.943 45 H 0.046 0.954 46 H 0.033 0.967 47 H 0.043 0.957 48 H 0.252 0.748 49 H 0.068 0.932 50 H 0.025 0.975 51 H 0.050 0.950 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 -4.215 -22.120 24.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.033 4.033 3 N -0.334 5.334 4 C 0.379 3.621 5 O -0.424 6.424 6 C -0.237 4.237 7 C -0.210 4.210 8 C -0.154 4.154 9 N -0.125 5.125 10 C -0.073 4.073 11 C -0.018 4.018 12 C -0.151 4.151 13 C 0.066 3.934 14 H 0.112 0.888 15 C -0.147 4.147 16 C -0.182 4.182 17 C 0.029 3.971 18 N -0.313 5.313 19 C -0.386 4.386 20 H 0.082 0.918 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.727 3.273 24 H -0.216 1.216 25 H -0.219 1.219 26 H -0.204 1.204 27 C 0.056 3.944 28 C -0.181 4.181 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.187 0.813 35 H 0.181 0.819 36 H 0.091 0.909 37 H 0.102 0.898 38 H 0.102 0.898 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.123 0.877 42 H 0.057 0.943 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.065 0.935 46 H 0.051 0.949 47 H 0.062 0.938 48 H 0.062 0.938 49 H 0.086 0.914 50 H 0.043 0.957 51 H 0.069 0.931 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.737 -3.690 -22.406 24.330 hybrid contribution -0.300 -1.043 0.567 1.224 sum -9.037 -4.733 -21.839 24.104 Atomic orbital electron populations 1.22413 0.96506 1.01822 1.03064 1.22054 0.94092 0.83535 1.03654 1.48130 1.65596 1.13605 1.06068 1.17310 0.77645 0.84616 0.82569 1.90694 1.44317 1.20337 1.87098 1.20289 1.11389 0.99867 0.92183 1.23086 1.04240 0.98148 0.95527 1.21766 1.05636 0.95208 0.92751 1.43550 1.43152 1.19625 1.06221 1.22052 1.03407 1.04007 0.77875 1.20310 0.99557 0.93802 0.88171 1.20574 0.98620 0.93291 1.02658 1.20527 0.95708 0.94092 0.83107 0.88762 1.20624 0.98287 0.98058 0.97714 1.21434 1.00447 1.00069 0.96263 1.20694 0.90470 0.89126 0.96788 1.43681 1.43267 1.27021 1.17330 1.19211 0.95231 1.25587 0.98604 0.91790 1.25020 0.94880 1.01400 0.98117 1.70095 0.98053 1.41273 1.45116 0.86362 0.77357 0.82171 0.81449 1.21615 1.21929 1.20449 1.20956 0.89861 0.99534 0.84014 1.22360 0.94547 1.01197 0.99959 0.91534 0.91900 0.91983 0.88972 0.90561 0.81314 0.81945 0.90855 0.89809 0.89793 0.90751 0.92316 0.87694 0.94274 0.91877 0.92424 0.93492 0.94913 0.93837 0.93815 0.91404 0.95663 0.93084 0.92098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.05 8.70 37.16 0.32 -1.73 16 2 C 0.09 1.20 5.54 -4.04 -0.02 1.18 16 3 N -0.60 -10.08 2.26 -168.90 -0.38 -10.46 16 4 C 0.59 10.23 7.05 -12.59 -0.09 10.14 16 5 O -0.55 -10.79 12.03 5.25 0.06 -10.73 16 6 C -0.23 -3.31 6.05 -103.35 -0.63 -3.94 16 7 C -0.19 -2.16 7.51 -37.50 -0.28 -2.44 16 8 C -0.03 -0.27 11.34 -16.82 -0.19 -0.46 16 9 N -0.45 -4.38 3.09 -119.89 -0.37 -4.75 16 10 C 0.07 0.37 10.82 59.85 0.65 1.02 16 11 C 0.10 1.23 6.89 -81.88 -0.56 0.67 16 12 C -0.09 -1.05 9.60 36.01 0.35 -0.71 16 13 C 0.17 3.23 2.17 -69.22 -0.15 3.08 16 14 H 0.09 1.99 7.13 -51.93 -0.37 1.61 16 15 C -0.11 -2.05 4.01 -29.79 -0.12 -2.17 16 16 C -0.14 -2.70 5.74 -28.58 -0.16 -2.87 16 17 C 0.16 3.47 5.65 -4.09 -0.02 3.44 16 18 N -0.59 -14.95 2.27 -172.09 -0.39 -15.34 16 19 C -0.26 -7.02 9.42 -15.06 -0.14 -7.17 16 20 H 0.06 1.74 7.89 -52.49 -0.41 1.32 16 21 C 0.00 0.13 4.81 -17.43 -0.08 0.04 16 22 N -0.90 -26.47 11.20 55.49 0.62 -25.85 16 23 Si 0.90 21.81 29.59 -169.99 -5.03 16.78 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 C 0.18 4.52 4.68 -2.94 -0.01 4.51 16 28 C -0.14 -3.01 4.21 -27.30 -0.11 -3.12 16 29 H 0.07 0.77 6.28 -51.93 -0.33 0.45 16 30 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.09 1.11 4.75 -51.93 -0.25 0.87 16 33 H 0.08 1.04 7.92 -51.93 -0.41 0.63 16 34 H 0.17 1.71 3.55 -52.48 -0.19 1.53 16 35 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.29 8.13 -51.93 -0.42 -0.13 16 38 H 0.08 0.38 6.88 -51.93 -0.36 0.02 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.48 6.92 -51.93 -0.36 0.13 16 41 H 0.10 1.44 6.34 -51.93 -0.33 1.11 16 42 H 0.04 0.71 8.04 -51.93 -0.42 0.29 16 43 H 0.06 1.28 6.42 -51.93 -0.33 0.95 16 44 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.03 0.71 8.07 -51.93 -0.42 0.30 16 47 H 0.04 0.96 7.99 -51.93 -0.41 0.55 16 48 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 49 H 0.07 1.85 6.45 -51.93 -0.33 1.51 16 50 H 0.03 0.69 8.03 -51.93 -0.42 0.27 16 51 H 0.05 1.08 7.97 -51.92 -0.41 0.67 16 52 H 0.06 1.36 6.60 -51.93 -0.34 1.02 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -32.78 386.51 -9.54 -42.31 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -8.61 Total: 2.74 kcal Atomic # 6 Polarization: 0.74 SS G_CDS: -1.27 Total: -0.52 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.52 Total: -56.41 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.06 Total: -10.73 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.03 Total: 16.78 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.78 -9.54 -42.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998116619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.674 kcal (2) G-P(sol) polarization free energy of solvation -32.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.898 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds