Wall clock time and date at job start Tue Mar 31 2020 18:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46992 * 2 1 4 4 C 1.34774 * 119.99814 * 270.08578 * 3 2 1 5 5 O 1.21635 * 120.00078 * 185.98117 * 4 3 2 6 6 C 1.47268 * 120.00248 * 5.98085 * 4 3 2 7 7 C 1.46683 * 126.93987 * 7.40429 * 6 4 3 8 8 C 1.34481 * 106.33468 * 179.83070 * 7 6 4 9 9 N 1.36456 * 108.85368 * 0.43411 * 8 7 6 10 10 C 1.46501 * 124.85146 * 179.69214 * 9 8 7 11 11 C 1.34658 * 110.29648 * 359.71140 * 9 8 7 12 12 C 1.50699 * 125.80154 * 179.97438 * 11 9 8 13 13 C 1.46493 * 120.00125 * 90.07977 * 3 2 1 14 14 H 1.09000 * 109.49126 * 0.05053 * 13 3 2 15 15 C 1.52570 * 109.49470 * 240.00208 * 13 3 2 16 16 C 1.47088 * 114.32766 * 155.00083 * 15 13 3 17 17 C 1.54869 * 110.32455 * 62.80262 * 16 15 13 18 18 N 1.44573 * 109.59755 * 288.73458 * 17 16 15 19 19 C 1.36932 * 118.64402 * 270.72027 * 18 17 16 20 20 H 1.08001 * 119.99924 * 27.20352 * 19 18 17 21 21 C 1.38813 * 120.00492 * 207.20018 * 19 18 17 22 22 N 1.31612 * 119.99806 * 17.67909 * 21 19 18 23 23 Si 1.86805 * 120.00098 * 197.68243 * 21 19 18 24 24 H 1.48497 * 109.47333 * 94.98311 * 23 21 19 25 25 H 1.48501 * 109.46843 * 214.98237 * 23 21 19 26 26 H 1.48497 * 109.47032 * 334.98001 * 23 21 19 27 27 C 1.47607 * 122.71517 * 90.72496 * 18 17 16 28 28 C 1.50881 * 109.50778 * 120.10551 * 13 3 2 29 29 H 1.08994 * 109.47406 * 60.00294 * 1 2 3 30 30 H 1.09005 * 109.46901 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.46880 * 299.99588 * 1 2 3 32 32 H 1.09001 * 109.47396 * 240.00331 * 2 1 3 33 33 H 1.08994 * 109.47406 * 119.99706 * 2 1 3 34 34 H 1.08006 * 126.83623 * 359.97438 * 7 6 4 35 35 H 1.08000 * 125.57773 * 180.15079 * 8 7 6 36 36 H 1.08998 * 109.46966 * 270.02643 * 10 9 8 37 37 H 1.09000 * 109.46958 * 30.01856 * 10 9 8 38 38 H 1.08991 * 109.46893 * 150.02282 * 10 9 8 39 39 H 1.08993 * 109.47198 * 270.02740 * 12 11 9 40 40 H 1.08998 * 109.46752 * 30.02709 * 12 11 9 41 41 H 1.09001 * 109.46841 * 150.02408 * 12 11 9 42 42 H 1.09004 * 108.51034 * 33.74313 * 15 13 3 43 43 H 1.09004 * 108.38971 * 276.17139 * 15 13 3 44 44 H 1.08993 * 109.32942 * 302.54111 * 16 15 13 45 45 H 1.09002 * 109.18904 * 182.97674 * 16 15 13 46 46 H 1.09005 * 109.44754 * 48.77265 * 17 16 15 47 47 H 1.08994 * 109.44947 * 168.68859 * 17 16 15 48 48 H 0.97000 * 120.00268 * 180.02562 * 22 21 19 49 49 H 1.08995 * 108.94974 * 197.18033 * 27 18 17 50 50 H 1.09006 * 108.87688 * 78.50519 * 27 18 17 51 51 H 1.09008 * 109.36572 * 332.05540 * 28 13 3 52 52 H 1.09002 * 109.37213 * 91.67233 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.2413 2.0171 -1.1672 5 8 2.7485 3.1227 -1.1703 6 6 1.8708 1.3735 -2.4389 7 6 1.1209 0.1244 -2.6091 8 6 1.0141 -0.0751 -3.9347 9 7 1.6454 0.9443 -4.5863 10 6 1.7474 1.0712 -6.0422 11 6 2.1615 1.8166 -3.6997 12 6 2.9294 3.0681 -4.0392 13 6 2.2642 2.0713 1.2687 14 1 2.0301 1.4031 2.0974 15 6 1.3823 3.3135 1.3518 16 6 1.0886 3.7575 2.7230 17 6 2.3950 4.1656 3.4477 18 7 3.1776 2.9852 3.7381 19 6 2.9674 2.3337 4.9240 20 1 2.0037 2.3911 5.4083 21 6 3.9928 1.5994 5.5039 22 7 5.2383 1.7976 5.1276 23 14 3.6048 0.3299 6.8183 24 1 3.4781 -1.0098 6.1904 25 1 4.6999 0.3052 7.8210 26 1 2.3282 0.6854 7.4883 27 6 4.1938 2.4533 2.8091 28 6 3.7141 2.4811 1.3466 29 1 -0.3634 0.5137 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5137 0.8899 34 1 0.7300 -0.5081 -1.8257 35 1 0.5148 -0.9084 -4.4066 36 1 2.6503 0.5682 -6.3884 37 1 0.8751 0.6136 -6.5088 38 1 1.7927 2.1261 -6.3126 39 1 3.9920 2.8352 -4.1065 40 1 2.5819 3.4594 -4.9953 41 1 2.7695 3.8146 -3.2612 42 1 0.4396 3.1032 0.8466 43 1 1.8823 4.1260 0.8245 44 1 0.6110 2.9452 3.2706 45 1 0.4142 4.6130 2.6858 46 1 2.9709 4.8347 2.8082 47 1 2.1492 4.6764 4.3786 48 1 5.9548 1.2843 5.5325 49 1 4.4234 1.4246 3.0868 50 1 5.0996 3.0535 2.8960 51 1 4.3169 1.7917 0.7553 52 1 3.8267 3.4895 0.9484 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998116619.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:36 Heat of formation + Delta-G solvation = 42.049336 kcal Electronic energy + Delta-G solvation = -30858.634923 eV Core-core repulsion = 27052.982253 eV Total energy + Delta-G solvation = -3805.652670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.39194 -40.92626 -38.81061 -36.99002 -35.31291 -33.88055 -32.85811 -32.52363 -32.46939 -30.85757 -28.20803 -27.35074 -27.08214 -25.53081 -25.03438 -24.33460 -22.49211 -22.01808 -21.19915 -20.37133 -19.17198 -18.51986 -17.80624 -17.26440 -16.92154 -16.60782 -16.47458 -16.06264 -15.71482 -15.52216 -15.47181 -15.04870 -14.73742 -14.45498 -14.18376 -13.96717 -13.89051 -13.77651 -13.70099 -13.41605 -13.30755 -13.15339 -13.02097 -12.85901 -12.84345 -12.71335 -12.44240 -12.42636 -12.32231 -12.05047 -12.00648 -11.93230 -11.75350 -11.48836 -11.33446 -11.24631 -10.52807 -10.35070 -9.56654 -9.37078 -8.99917 -8.63660 -7.82319 -5.29409 0.83821 1.48598 1.49501 1.58716 1.59264 1.94958 2.32620 2.54629 2.66617 3.30090 3.65335 3.75558 3.89235 4.01505 4.06793 4.08415 4.13876 4.21195 4.37389 4.41707 4.43817 4.44791 4.51237 4.52205 4.64639 4.67780 4.73745 4.74861 4.75959 4.80879 4.90415 4.92018 5.02567 5.05411 5.11517 5.13253 5.17889 5.21997 5.26011 5.31227 5.34751 5.45021 5.51464 5.58196 5.68037 5.74952 5.86282 5.89320 6.18071 6.43666 6.44710 6.74626 7.20168 7.49041 7.95470 8.38848 9.23474 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019083 B = 0.003245 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1466.888686 B = 8627.885697 C = 9041.045442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.085 3.915 3 N -0.606 5.606 4 C 0.580 3.420 5 O -0.582 6.582 6 C -0.266 4.266 7 C -0.202 4.202 8 C -0.012 4.012 9 N -0.443 5.443 10 C 0.059 3.941 11 C 0.088 3.912 12 C -0.090 4.090 13 C 0.178 3.822 14 H 0.078 0.922 15 C -0.097 4.097 16 C -0.126 4.126 17 C 0.152 3.848 18 N -0.602 5.602 19 C -0.262 4.262 20 H 0.069 0.931 21 C -0.049 4.049 22 N -0.936 5.936 23 Si 0.964 3.036 24 H -0.285 1.285 25 H -0.298 1.298 26 H -0.266 1.266 27 C 0.199 3.801 28 C -0.119 4.119 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.044 0.956 32 H 0.109 0.891 33 H 0.068 0.932 34 H 0.180 0.820 35 H 0.203 0.797 36 H 0.086 0.914 37 H 0.110 0.890 38 H 0.092 0.908 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.074 0.926 42 H 0.051 0.949 43 H 0.047 0.953 44 H 0.052 0.948 45 H 0.075 0.925 46 H 0.029 0.971 47 H 0.042 0.958 48 H 0.248 0.752 49 H 0.041 0.959 50 H -0.010 1.010 51 H 0.046 0.954 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.807 -6.013 -24.427 27.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.036 4.036 3 N -0.337 5.337 4 C 0.373 3.627 5 O -0.464 6.464 6 C -0.276 4.276 7 C -0.225 4.225 8 C -0.139 4.139 9 N -0.118 5.118 10 C -0.081 4.081 11 C -0.030 4.030 12 C -0.147 4.147 13 C 0.075 3.925 14 H 0.096 0.904 15 C -0.136 4.136 16 C -0.166 4.166 17 C 0.026 3.974 18 N -0.324 5.324 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.244 4.244 22 N -0.583 5.583 23 Si 0.792 3.208 24 H -0.212 1.212 25 H -0.225 1.225 26 H -0.191 1.191 27 C 0.074 3.926 28 C -0.159 4.159 29 H 0.085 0.915 30 H 0.112 0.888 31 H 0.064 0.936 32 H 0.127 0.873 33 H 0.087 0.913 34 H 0.197 0.803 35 H 0.220 0.780 36 H 0.104 0.896 37 H 0.128 0.872 38 H 0.111 0.889 39 H 0.092 0.908 40 H 0.108 0.892 41 H 0.093 0.907 42 H 0.070 0.930 43 H 0.066 0.934 44 H 0.071 0.929 45 H 0.093 0.907 46 H 0.048 0.952 47 H 0.061 0.939 48 H 0.057 0.943 49 H 0.059 0.941 50 H 0.008 0.992 51 H 0.065 0.935 52 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -11.398 -5.501 -24.747 27.796 hybrid contribution 0.532 -0.445 1.175 1.364 sum -10.866 -5.945 -23.573 26.629 Atomic orbital electron populations 1.22318 0.94581 1.03592 1.02205 1.22297 0.95638 0.81625 1.04086 1.48147 1.65815 1.14792 1.04942 1.17855 0.76948 0.84349 0.83592 1.90666 1.46084 1.21987 1.87708 1.20245 1.14060 1.01904 0.91373 1.23193 1.04806 0.97408 0.97073 1.22375 1.03922 0.95375 0.92192 1.43845 1.41606 1.18641 1.07726 1.22412 1.05322 1.05234 0.75120 1.20439 0.99647 0.94490 0.88439 1.20493 0.98695 0.92422 1.03125 1.20177 0.93952 0.94194 0.84224 0.90428 1.20497 0.98438 0.97193 0.97443 1.21262 0.98876 1.00917 0.95593 1.20846 0.91425 0.88093 0.97063 1.43853 1.43489 1.28034 1.17074 1.19512 0.95273 1.25449 0.98984 0.91368 1.25798 0.94658 1.03328 1.00616 1.70262 0.98934 1.42325 1.46730 0.85301 0.77241 0.79561 0.78677 1.21182 1.22513 1.19091 1.20618 0.88956 0.97025 0.86041 1.22083 0.96346 1.00429 0.97040 0.91460 0.88783 0.93644 0.87326 0.91302 0.80308 0.77990 0.89584 0.87191 0.88942 0.90781 0.89236 0.90724 0.93042 0.93383 0.92879 0.90663 0.95246 0.93928 0.94303 0.94090 0.99210 0.93503 0.93266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 8.70 71.98 0.63 -2.92 16 2 C 0.09 2.22 5.54 86.38 0.48 2.70 16 3 N -0.61 -20.58 2.26 -806.52 -1.82 -22.40 16 4 C 0.58 20.60 7.05 86.62 0.61 21.21 16 5 O -0.58 -24.11 12.03 -4.14 -0.05 -24.16 16 6 C -0.27 -7.56 6.05 -19.04 -0.12 -7.68 16 7 C -0.20 -4.20 7.51 23.62 0.18 -4.02 16 8 C -0.01 -0.19 11.34 83.11 0.94 0.75 16 9 N -0.44 -7.21 3.09 -533.21 -1.65 -8.86 16 10 C 0.06 0.40 10.82 127.77 1.38 1.78 16 11 C 0.09 2.11 6.89 41.78 0.29 2.40 16 12 C -0.09 -1.98 9.60 71.24 0.68 -1.29 16 13 C 0.18 7.04 2.17 44.16 0.10 7.14 16 14 H 0.08 3.35 7.13 -2.39 -0.02 3.34 16 15 C -0.10 -3.70 4.01 28.61 0.11 -3.58 16 16 C -0.13 -4.75 5.74 29.39 0.17 -4.58 16 17 C 0.15 6.84 5.65 87.38 0.49 7.33 16 18 N -0.60 -31.46 2.27 -698.37 -1.58 -33.05 16 19 C -0.26 -14.59 9.42 84.03 0.79 -13.79 16 20 H 0.07 3.69 7.89 -2.91 -0.02 3.67 16 21 C -0.05 -2.77 4.81 84.86 0.41 -2.36 16 22 N -0.94 -57.06 11.20 21.65 0.24 -56.82 16 23 Si 0.96 45.46 29.59 68.60 2.03 47.49 16 24 H -0.29 -13.17 7.11 99.48 0.71 -12.47 16 25 H -0.30 -14.25 7.11 99.48 0.71 -13.54 16 26 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 27 C 0.20 10.50 4.68 86.49 0.40 10.91 16 28 C -0.12 -5.37 4.21 30.22 0.13 -5.24 16 29 H 0.07 1.43 6.28 -2.39 -0.02 1.41 16 30 H 0.09 1.38 8.14 -2.38 -0.02 1.37 16 31 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.11 2.48 4.75 -2.39 -0.01 2.47 16 33 H 0.07 1.87 7.92 -2.39 -0.02 1.85 16 34 H 0.18 3.14 3.55 -2.91 -0.01 3.13 16 35 H 0.20 1.39 8.06 -2.91 -0.02 1.37 16 36 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 37 H 0.11 0.21 8.13 -2.39 -0.02 0.19 16 38 H 0.09 0.49 6.88 -2.39 -0.02 0.47 16 39 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 40 H 0.09 1.32 6.92 -2.39 -0.02 1.30 16 41 H 0.07 2.13 6.34 -2.39 -0.02 2.11 16 42 H 0.05 1.83 8.04 -2.38 -0.02 1.81 16 43 H 0.05 1.99 6.42 -2.38 -0.02 1.97 16 44 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 45 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 46 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 47 H 0.04 1.90 7.99 -2.39 -0.02 1.88 16 48 H 0.25 14.64 8.31 -92.71 -0.77 13.87 16 49 H 0.04 2.35 6.45 -2.39 -0.02 2.34 16 50 H -0.01 -0.60 8.03 -2.38 -0.02 -0.62 16 51 H 0.05 2.11 7.97 -2.38 -0.02 2.09 16 52 H 0.05 2.32 6.60 -2.39 -0.02 2.31 16 Total: -1.00 -74.85 386.51 5.76 -69.09 By element: Atomic # 1 Polarization: 19.05 SS G_CDS: 0.90 Total: 19.96 kcal Atomic # 6 Polarization: 1.06 SS G_CDS: 7.68 Total: 8.74 kcal Atomic # 7 Polarization: -116.31 SS G_CDS: -4.81 Total: -121.12 kcal Atomic # 8 Polarization: -24.11 SS G_CDS: -0.05 Total: -24.16 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -74.85 5.76 -69.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998116619.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.138 kcal (2) G-P(sol) polarization free energy of solvation -74.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.089 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds