Wall clock time and date at job start Tue Mar 31 2020 18:09:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46693 * 2 1 4 4 C 1.34773 * 120.00175 * 84.56821 * 3 2 1 5 5 O 1.21688 * 120.00265 * 182.77003 * 4 3 2 6 6 C 1.46683 * 119.99660 * 2.48714 * 4 3 2 7 7 C 1.37868 * 126.23740 * 346.64558 * 6 4 3 8 8 C 1.39833 * 107.08539 * 179.97438 * 7 6 4 9 9 C 1.35450 * 107.86776 * 359.97438 * 8 7 6 10 10 N 1.35536 * 108.86966 * 359.73295 * 9 8 7 11 11 C 1.46495 * 125.67883 * 180.30063 * 10 9 8 12 12 C 1.53001 * 109.47456 * 265.84165 * 11 10 9 13 13 C 1.46501 * 119.99896 * 264.56034 * 3 2 1 14 14 H 1.08994 * 109.20535 * 0.64678 * 13 3 2 15 15 C 1.50135 * 109.20806 * 120.00516 * 13 3 2 16 16 C 1.52527 * 105.41566 * 218.02695 * 15 13 3 17 17 C 1.46239 * 114.27670 * 270.59392 * 16 15 13 18 18 N 1.50167 * 107.53380 * 58.40889 * 17 16 15 19 19 C 1.36930 * 120.54028 * 109.61120 * 18 17 16 20 20 H 1.07996 * 120.00511 * 147.90578 * 19 18 17 21 21 C 1.38811 * 119.99958 * 327.90396 * 19 18 17 22 22 N 1.31618 * 120.00219 * 0.20460 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 180.20912 * 21 19 18 24 24 H 1.48496 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47433 * 119.99773 * 23 21 19 26 26 H 1.48507 * 109.47170 * 239.99845 * 23 21 19 27 27 C 1.43438 * 118.92208 * 289.58788 * 18 17 16 28 28 C 1.54841 * 109.21147 * 241.32657 * 13 3 2 29 29 H 1.09010 * 109.47076 * 66.23935 * 1 2 3 30 30 H 1.08999 * 109.46861 * 186.23968 * 1 2 3 31 31 H 1.09001 * 109.47379 * 306.24306 * 1 2 3 32 32 H 1.08995 * 109.47140 * 240.00244 * 2 1 3 33 33 H 1.08995 * 109.46772 * 119.99652 * 2 1 3 34 34 H 1.07998 * 126.45311 * 359.97260 * 7 6 4 35 35 H 1.08002 * 126.06410 * 179.97438 * 8 7 6 36 36 H 1.07994 * 125.56617 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.46711 * 25.84082 * 11 10 9 38 38 H 1.09007 * 109.47206 * 145.83573 * 11 10 9 39 39 H 1.09004 * 109.47013 * 175.04298 * 12 11 10 40 40 H 1.08996 * 109.46855 * 295.04065 * 12 11 10 41 41 H 1.08992 * 109.47011 * 55.04004 * 12 11 10 42 42 H 1.09001 * 110.24356 * 336.99910 * 15 13 3 43 43 H 1.09000 * 110.24784 * 99.05060 * 15 13 3 44 44 H 1.08996 * 108.52319 * 31.83524 * 16 15 13 45 45 H 1.08995 * 108.52283 * 149.35313 * 16 15 13 46 46 H 1.08996 * 109.84719 * 177.91859 * 17 16 15 47 47 H 1.09004 * 109.84638 * 298.90313 * 17 16 15 48 48 H 0.96995 * 120.00538 * 180.02562 * 22 21 19 49 49 H 1.08998 * 108.16047 * 213.28509 * 27 18 17 50 50 H 1.08998 * 108.16348 * 330.06344 * 27 18 17 51 51 H 1.09003 * 109.35810 * 320.99900 * 28 13 3 52 52 H 1.08995 * 109.35799 * 80.58322 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1387 2.0535 1.1619 5 8 2.4960 3.2167 1.1577 6 6 1.8330 1.3847 2.4311 7 6 1.1769 0.1815 2.5810 8 6 1.1028 -0.0780 3.9530 9 6 1.7021 0.9481 4.6030 10 7 2.1557 1.8406 3.6893 11 6 2.8674 3.0850 3.9906 12 6 1.8677 4.2414 4.0564 13 6 2.3758 2.0318 -1.2630 14 1 2.2013 1.3382 -2.0855 15 6 1.5169 3.2486 -1.4524 16 6 1.1986 3.2921 -2.9434 17 6 2.1711 4.0347 -3.7444 18 7 3.5119 3.3900 -3.5402 19 6 4.1040 2.6807 -4.5508 20 1 5.1802 2.6622 -4.6391 21 6 3.3209 1.9853 -5.4619 22 7 2.0092 2.0110 -5.3569 23 14 4.1288 1.0129 -6.8371 24 1 5.6044 1.1448 -6.7359 25 1 3.7501 -0.4182 -6.7201 26 1 3.6740 1.5396 -8.1491 27 6 4.1625 3.5296 -2.2695 28 6 3.8753 2.4164 -1.2315 29 1 -0.3634 0.4141 -0.9406 30 1 -0.3633 -1.0216 0.1117 31 1 -0.3634 0.6076 0.8288 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7925 -0.4429 1.7880 35 1 0.6483 -0.9431 4.4128 36 1 1.8055 1.0384 5.6741 37 1 3.3761 2.9895 4.9500 38 1 3.6008 3.2827 3.2087 39 1 2.3833 5.1502 4.3668 40 1 1.4231 4.3936 3.0730 41 1 1.0846 4.0040 4.7764 42 1 0.5983 3.1556 -0.8731 43 1 2.0621 4.1449 -1.1566 44 1 1.1509 2.2694 -3.3174 45 1 0.2189 3.7513 -3.0751 46 1 1.8950 3.9889 -4.7978 47 1 2.2059 5.0732 -3.4150 48 1 1.4620 1.5248 -5.9933 49 1 5.2383 3.5651 -2.4408 50 1 3.8584 4.4819 -1.8350 51 1 4.1355 2.7751 -0.2356 52 1 4.4783 1.5392 -1.4662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000998189299.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:05 Heat of formation + Delta-G solvation = 70.450587 kcal Electronic energy + Delta-G solvation = -31342.716334 eV Core-core repulsion = 27538.295234 eV Total energy + Delta-G solvation = -3804.421100 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.54688 -39.51355 -37.18384 -35.99879 -34.02256 -33.10473 -31.48480 -31.04869 -29.69325 -29.15921 -28.73425 -26.01576 -24.17770 -23.63217 -23.42649 -23.09510 -21.32814 -20.81271 -19.74590 -19.28935 -18.35126 -17.04003 -16.67012 -15.96878 -15.45282 -15.27929 -14.95657 -14.71558 -14.28473 -14.18613 -13.91103 -13.71070 -13.58397 -13.27215 -13.04492 -12.83458 -12.52703 -12.40231 -12.20913 -12.12085 -12.01617 -11.75436 -11.68297 -11.51605 -11.26083 -11.21739 -11.06211 -10.91892 -10.89436 -10.44608 -10.32972 -9.98166 -9.86343 -9.63477 -9.50338 -9.32540 -9.11193 -8.71627 -8.36381 -8.25555 -8.04612 -6.51872 -5.74255 -3.26234 1.63586 2.68459 2.77331 3.36986 3.45395 3.47073 3.50339 3.59754 4.51282 4.62409 4.69439 4.94263 4.98234 5.09635 5.18147 5.33247 5.36186 5.39020 5.39725 5.53283 5.54502 5.61214 5.70762 5.73950 5.83194 5.89371 5.92020 6.07376 6.10657 6.16727 6.18107 6.26597 6.38269 6.45458 6.51676 6.55933 6.71445 6.76156 6.86376 6.93174 7.01102 7.04155 7.10061 7.14107 7.24243 7.31997 7.42550 7.74360 7.82819 7.85028 8.07363 8.54890 8.55777 9.26895 9.90008 10.47836 11.30809 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.003566 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.787480 B = 7849.416811 C = 8456.115592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.081 3.919 3 N -0.593 5.593 4 C 0.580 3.420 5 O -0.542 6.542 6 C -0.039 4.039 7 C -0.175 4.175 8 C -0.212 4.212 9 C 0.004 3.996 10 N -0.409 5.409 11 C 0.101 3.899 12 C -0.163 4.163 13 C 0.169 3.831 14 H 0.097 0.903 15 C -0.112 4.112 16 C -0.126 4.126 17 C 0.165 3.835 18 N -0.592 5.592 19 C -0.245 4.245 20 H 0.064 0.936 21 C 0.007 3.993 22 N -0.904 5.904 23 Si 0.900 3.100 24 H -0.279 1.279 25 H -0.290 1.290 26 H -0.291 1.291 27 C 0.166 3.834 28 C -0.149 4.149 29 H 0.065 0.935 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.171 0.829 35 H 0.138 0.862 36 H 0.162 0.838 37 H 0.083 0.917 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.074 0.926 41 H 0.054 0.946 42 H 0.045 0.955 43 H 0.066 0.934 44 H 0.096 0.904 45 H 0.025 0.975 46 H 0.096 0.904 47 H 0.000 1.000 48 H 0.251 0.749 49 H 0.030 0.970 50 H 0.030 0.970 51 H 0.060 0.940 52 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.209 -3.092 18.574 19.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.042 4.042 3 N -0.324 5.324 4 C 0.369 3.631 5 O -0.421 6.421 6 C -0.152 4.152 7 C -0.200 4.200 8 C -0.237 4.237 9 C -0.131 4.131 10 N -0.082 5.082 11 C -0.020 4.020 12 C -0.221 4.221 13 C 0.068 3.932 14 H 0.115 0.885 15 C -0.150 4.150 16 C -0.165 4.165 17 C 0.042 3.958 18 N -0.314 5.314 19 C -0.375 4.375 20 H 0.081 0.919 21 C -0.191 4.191 22 N -0.550 5.550 23 Si 0.731 3.269 24 H -0.205 1.205 25 H -0.217 1.217 26 H -0.218 1.218 27 C 0.036 3.964 28 C -0.191 4.191 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.188 0.812 35 H 0.156 0.844 36 H 0.180 0.820 37 H 0.102 0.898 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.093 0.907 41 H 0.073 0.927 42 H 0.063 0.937 43 H 0.085 0.915 44 H 0.115 0.885 45 H 0.044 0.956 46 H 0.114 0.886 47 H 0.018 0.982 48 H 0.062 0.938 49 H 0.048 0.952 50 H 0.048 0.952 51 H 0.078 0.922 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -2.911 -2.189 18.450 18.806 hybrid contribution 0.227 -0.879 -0.520 1.046 sum -2.684 -3.068 17.930 18.387 Atomic orbital electron populations 1.22372 0.95954 1.02079 1.03264 1.22238 0.94504 0.83456 1.04045 1.48207 1.63802 1.13717 1.06695 1.16969 0.78024 0.85666 0.82413 1.90760 1.48188 1.15988 1.87184 1.20352 1.10832 0.98291 0.85762 1.22501 1.03660 0.96248 0.97575 1.20856 1.08203 1.00715 0.93894 1.21927 1.04026 0.92172 0.94973 1.44078 1.41769 1.17446 1.04936 1.21940 0.95484 0.81929 1.02674 1.22077 0.99153 0.97178 1.03670 1.21377 0.94918 0.94862 0.82046 0.88526 1.21340 0.97848 0.98101 0.97748 1.20970 0.97623 1.05282 0.92652 1.20210 0.84209 0.90200 1.01222 1.44157 1.20279 1.59704 1.07211 1.19254 0.91102 1.21857 1.05264 0.91864 1.25176 0.95542 0.98165 1.00209 1.69888 1.02834 1.44779 1.37458 0.86243 0.78837 0.79977 0.81872 1.20454 1.21715 1.21812 1.20304 0.95581 0.94280 0.86215 1.23215 0.94529 1.00987 1.00345 0.91628 0.91539 0.91735 0.90119 0.88765 0.81223 0.84434 0.82035 0.89820 0.88112 0.91017 0.90659 0.92713 0.93651 0.91498 0.88549 0.95643 0.88577 0.98227 0.93828 0.95167 0.95210 0.92191 0.93571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.56 37.16 0.32 -1.82 16 2 C 0.08 1.08 5.61 -4.04 -0.02 1.06 16 3 N -0.59 -9.86 2.30 -168.16 -0.39 -10.25 16 4 C 0.58 9.86 6.73 -12.85 -0.09 9.77 16 5 O -0.54 -10.28 11.34 5.20 0.06 -10.22 16 6 C -0.04 -0.56 6.70 -81.98 -0.55 -1.11 16 7 C -0.17 -2.18 7.49 -39.12 -0.29 -2.47 16 8 C -0.21 -2.32 10.81 -39.98 -0.43 -2.75 16 9 C 0.00 0.04 11.37 -16.91 -0.19 -0.15 16 10 N -0.41 -5.15 2.76 -112.87 -0.31 -5.47 16 11 C 0.10 1.11 6.07 -4.04 -0.02 1.08 16 12 C -0.16 -1.74 10.17 37.16 0.38 -1.36 16 13 C 0.17 3.30 2.30 -68.38 -0.16 3.14 16 14 H 0.10 2.13 6.39 -51.93 -0.33 1.80 16 15 C -0.11 -2.27 4.14 -28.40 -0.12 -2.38 16 16 C -0.13 -2.78 4.98 -30.19 -0.15 -2.93 16 17 C 0.16 3.95 5.23 -5.20 -0.03 3.92 16 18 N -0.59 -14.69 2.59 -175.09 -0.45 -15.15 16 19 C -0.24 -6.56 9.61 -15.06 -0.14 -6.71 16 20 H 0.06 1.71 7.83 -52.49 -0.41 1.30 16 21 C 0.01 0.18 5.28 -17.43 -0.09 0.09 16 22 N -0.90 -24.33 8.86 55.49 0.49 -23.83 16 23 Si 0.90 21.21 29.55 -169.99 -5.02 16.19 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 27 C 0.17 3.68 5.18 -4.66 -0.02 3.65 16 28 C -0.15 -3.04 5.79 -24.76 -0.14 -3.18 16 29 H 0.06 0.89 8.14 -51.92 -0.42 0.47 16 30 H 0.07 0.62 8.13 -51.93 -0.42 0.20 16 31 H 0.06 0.81 6.63 -51.93 -0.34 0.46 16 32 H 0.08 1.10 7.80 -51.93 -0.41 0.69 16 33 H 0.09 1.13 4.73 -51.93 -0.25 0.89 16 34 H 0.17 1.88 3.26 -52.49 -0.17 1.71 16 35 H 0.14 1.17 8.06 -52.49 -0.42 0.75 16 36 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.08 0.67 8.13 -51.93 -0.42 0.25 16 38 H 0.10 1.30 6.95 -51.92 -0.36 0.94 16 39 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.07 1.03 7.23 -51.93 -0.38 0.66 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.04 0.90 7.86 -51.93 -0.41 0.49 16 43 H 0.07 1.44 5.96 -51.93 -0.31 1.13 16 44 H 0.10 2.36 5.22 -51.93 -0.27 2.09 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.10 2.55 6.07 -51.93 -0.32 2.23 16 47 H 0.00 -0.01 8.12 -51.93 -0.42 -0.43 16 48 H 0.25 6.63 8.31 -40.82 -0.34 6.29 16 49 H 0.03 0.67 8.00 -51.93 -0.42 0.25 16 50 H 0.03 0.65 6.88 -51.93 -0.36 0.29 16 51 H 0.06 1.22 6.11 -51.93 -0.32 0.90 16 52 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 381.19 15.07 5.74 5.74 Total: -1.00 -29.21 381.19 -10.04 -39.25 By element: Atomic # 1 Polarization: 14.30 SS G_CDS: -8.40 Total: 5.90 kcal Atomic # 6 Polarization: -0.40 SS G_CDS: -1.76 Total: -2.16 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: -0.66 Total: -54.69 kcal Atomic # 8 Polarization: -10.28 SS G_CDS: 0.06 Total: -10.22 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.21 -10.04 -39.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998189299.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.699 kcal (2) G-P(sol) polarization free energy of solvation -29.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.494 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds