Wall clock time and date at job start Tue Mar 31 2020 18:09:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46502 * 109.46693 * 2 1 4 4 C 1.34773 * 120.00175 * 84.56821 * 3 2 1 5 5 O 1.21688 * 120.00265 * 182.77003 * 4 3 2 6 6 C 1.46683 * 119.99660 * 2.48714 * 4 3 2 7 7 C 1.37868 * 126.23740 * 346.64558 * 6 4 3 8 8 C 1.39833 * 107.08539 * 179.97438 * 7 6 4 9 9 C 1.35450 * 107.86776 * 359.97438 * 8 7 6 10 10 N 1.35536 * 108.86966 * 359.73295 * 9 8 7 11 11 C 1.46495 * 125.67883 * 180.30063 * 10 9 8 12 12 C 1.53001 * 109.47456 * 265.84165 * 11 10 9 13 13 C 1.46501 * 119.99896 * 264.56034 * 3 2 1 14 14 H 1.08994 * 109.20535 * 0.64678 * 13 3 2 15 15 C 1.50135 * 109.20806 * 120.00516 * 13 3 2 16 16 C 1.52527 * 105.41566 * 218.02695 * 15 13 3 17 17 C 1.46239 * 114.27670 * 270.59392 * 16 15 13 18 18 N 1.50167 * 107.53380 * 58.40889 * 17 16 15 19 19 C 1.36930 * 120.54028 * 109.61120 * 18 17 16 20 20 H 1.07996 * 120.00511 * 147.90578 * 19 18 17 21 21 C 1.38811 * 119.99958 * 327.90396 * 19 18 17 22 22 N 1.31618 * 120.00219 * 0.20460 * 21 19 18 23 23 Si 1.86800 * 120.00269 * 180.20912 * 21 19 18 24 24 H 1.48496 * 109.47148 * 359.97438 * 23 21 19 25 25 H 1.48500 * 109.47433 * 119.99773 * 23 21 19 26 26 H 1.48507 * 109.47170 * 239.99845 * 23 21 19 27 27 C 1.43438 * 118.92208 * 289.58788 * 18 17 16 28 28 C 1.54841 * 109.21147 * 241.32657 * 13 3 2 29 29 H 1.09010 * 109.47076 * 66.23935 * 1 2 3 30 30 H 1.08999 * 109.46861 * 186.23968 * 1 2 3 31 31 H 1.09001 * 109.47379 * 306.24306 * 1 2 3 32 32 H 1.08995 * 109.47140 * 240.00244 * 2 1 3 33 33 H 1.08995 * 109.46772 * 119.99652 * 2 1 3 34 34 H 1.07998 * 126.45311 * 359.97260 * 7 6 4 35 35 H 1.08002 * 126.06410 * 179.97438 * 8 7 6 36 36 H 1.07994 * 125.56617 * 179.97438 * 9 8 7 37 37 H 1.09005 * 109.46711 * 25.84082 * 11 10 9 38 38 H 1.09007 * 109.47206 * 145.83573 * 11 10 9 39 39 H 1.09004 * 109.47013 * 175.04298 * 12 11 10 40 40 H 1.08996 * 109.46855 * 295.04065 * 12 11 10 41 41 H 1.08992 * 109.47011 * 55.04004 * 12 11 10 42 42 H 1.09001 * 110.24356 * 336.99910 * 15 13 3 43 43 H 1.09000 * 110.24784 * 99.05060 * 15 13 3 44 44 H 1.08996 * 108.52319 * 31.83524 * 16 15 13 45 45 H 1.08995 * 108.52283 * 149.35313 * 16 15 13 46 46 H 1.08996 * 109.84719 * 177.91859 * 17 16 15 47 47 H 1.09004 * 109.84638 * 298.90313 * 17 16 15 48 48 H 0.96995 * 120.00538 * 180.02562 * 22 21 19 49 49 H 1.08998 * 108.16047 * 213.28509 * 27 18 17 50 50 H 1.08998 * 108.16348 * 330.06344 * 27 18 17 51 51 H 1.09003 * 109.35810 * 320.99900 * 28 13 3 52 52 H 1.08995 * 109.35799 * 80.58322 * 28 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1387 2.0535 1.1619 5 8 2.4960 3.2167 1.1577 6 6 1.8330 1.3847 2.4311 7 6 1.1769 0.1815 2.5810 8 6 1.1028 -0.0780 3.9530 9 6 1.7021 0.9481 4.6030 10 7 2.1557 1.8406 3.6893 11 6 2.8674 3.0850 3.9906 12 6 1.8677 4.2414 4.0564 13 6 2.3758 2.0318 -1.2630 14 1 2.2013 1.3382 -2.0855 15 6 1.5169 3.2486 -1.4524 16 6 1.1986 3.2921 -2.9434 17 6 2.1711 4.0347 -3.7444 18 7 3.5119 3.3900 -3.5402 19 6 4.1040 2.6807 -4.5508 20 1 5.1802 2.6622 -4.6391 21 6 3.3209 1.9853 -5.4619 22 7 2.0092 2.0110 -5.3569 23 14 4.1288 1.0129 -6.8371 24 1 5.6044 1.1448 -6.7359 25 1 3.7501 -0.4182 -6.7201 26 1 3.6740 1.5396 -8.1491 27 6 4.1625 3.5296 -2.2695 28 6 3.8753 2.4164 -1.2315 29 1 -0.3634 0.4141 -0.9406 30 1 -0.3633 -1.0216 0.1117 31 1 -0.3634 0.6076 0.8288 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.7925 -0.4429 1.7880 35 1 0.6483 -0.9431 4.4128 36 1 1.8055 1.0384 5.6741 37 1 3.3761 2.9895 4.9500 38 1 3.6008 3.2827 3.2087 39 1 2.3833 5.1502 4.3668 40 1 1.4231 4.3936 3.0730 41 1 1.0846 4.0040 4.7764 42 1 0.5983 3.1556 -0.8731 43 1 2.0621 4.1449 -1.1566 44 1 1.1509 2.2694 -3.3174 45 1 0.2189 3.7513 -3.0751 46 1 1.8950 3.9889 -4.7978 47 1 2.2059 5.0732 -3.4150 48 1 1.4620 1.5248 -5.9933 49 1 5.2383 3.5651 -2.4408 50 1 3.8584 4.4819 -1.8350 51 1 4.1355 2.7751 -0.2356 52 1 4.4783 1.5392 -1.4662 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000998189299.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:09:04 Heat of formation + Delta-G solvation = 57.028542 kcal Electronic energy + Delta-G solvation = -31343.298358 eV Core-core repulsion = 27538.295234 eV Total energy + Delta-G solvation = -3805.003123 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.53327 -40.86222 -38.86111 -37.26181 -35.22459 -34.57745 -33.33402 -32.74891 -30.92384 -30.07464 -29.93584 -27.87463 -25.83533 -25.09990 -24.54013 -24.35783 -22.51829 -21.93221 -21.54142 -20.65756 -19.57824 -18.59517 -18.14044 -17.15072 -16.98171 -16.83191 -16.30645 -15.88619 -15.67261 -15.61310 -15.18146 -15.06740 -14.92372 -14.80309 -14.32624 -14.08957 -13.99387 -13.85248 -13.45376 -13.24211 -13.19608 -13.08656 -13.01116 -12.88753 -12.83939 -12.70362 -12.41204 -12.30793 -12.17198 -12.09203 -11.99300 -11.87880 -11.55855 -11.41020 -11.26248 -11.18412 -10.59605 -10.38075 -9.66666 -9.50438 -9.05745 -8.51287 -7.78746 -5.33921 0.60506 1.48096 1.51234 1.59729 1.70064 1.91733 2.35148 2.43784 2.54086 3.34463 3.54397 3.66918 3.83422 4.01494 4.02796 4.12924 4.14439 4.22321 4.33489 4.37692 4.42060 4.46057 4.50773 4.51718 4.59319 4.66370 4.71601 4.78104 4.80314 4.85502 4.92834 4.94829 4.98005 5.07918 5.14495 5.19239 5.21562 5.26020 5.30496 5.32300 5.40302 5.40990 5.54989 5.68461 5.73654 5.82044 5.95852 6.10256 6.16582 6.42330 6.50372 6.56956 7.22329 7.27788 7.89470 8.45355 9.24119 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018652 B = 0.003566 C = 0.003310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.787480 B = 7849.416811 C = 8456.115592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.078 3.922 3 N -0.598 5.598 4 C 0.575 3.425 5 O -0.572 6.572 6 C -0.081 4.081 7 C -0.167 4.167 8 C -0.221 4.221 9 C 0.019 3.981 10 N -0.416 5.416 11 C 0.099 3.901 12 C -0.155 4.155 13 C 0.183 3.817 14 H 0.071 0.929 15 C -0.093 4.093 16 C -0.114 4.114 17 C 0.169 3.831 18 N -0.602 5.602 19 C -0.265 4.265 20 H 0.057 0.943 21 C -0.031 4.031 22 N -0.916 5.916 23 Si 0.961 3.039 24 H -0.275 1.275 25 H -0.290 1.290 26 H -0.292 1.292 27 C 0.166 3.834 28 C -0.136 4.136 29 H 0.044 0.956 30 H 0.099 0.901 31 H 0.060 0.940 32 H 0.075 0.925 33 H 0.114 0.886 34 H 0.180 0.820 35 H 0.165 0.835 36 H 0.201 0.799 37 H 0.121 0.879 38 H 0.073 0.927 39 H 0.088 0.912 40 H 0.036 0.964 41 H 0.066 0.934 42 H 0.048 0.952 43 H 0.054 0.946 44 H 0.074 0.926 45 H 0.033 0.967 46 H 0.070 0.930 47 H 0.007 0.993 48 H 0.249 0.751 49 H 0.028 0.972 50 H 0.031 0.969 51 H 0.061 0.939 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.576 -4.654 21.163 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.044 4.044 3 N -0.329 5.329 4 C 0.366 3.634 5 O -0.454 6.454 6 C -0.194 4.194 7 C -0.192 4.192 8 C -0.245 4.245 9 C -0.116 4.116 10 N -0.090 5.090 11 C -0.022 4.022 12 C -0.213 4.213 13 C 0.080 3.920 14 H 0.089 0.911 15 C -0.131 4.131 16 C -0.153 4.153 17 C 0.046 3.954 18 N -0.325 5.325 19 C -0.395 4.395 20 H 0.075 0.925 21 C -0.228 4.228 22 N -0.561 5.561 23 Si 0.790 3.210 24 H -0.200 1.200 25 H -0.216 1.216 26 H -0.219 1.219 27 C 0.037 3.963 28 C -0.177 4.177 29 H 0.063 0.937 30 H 0.117 0.883 31 H 0.079 0.921 32 H 0.093 0.907 33 H 0.132 0.868 34 H 0.197 0.803 35 H 0.183 0.817 36 H 0.218 0.782 37 H 0.139 0.861 38 H 0.092 0.908 39 H 0.107 0.893 40 H 0.055 0.945 41 H 0.085 0.915 42 H 0.067 0.933 43 H 0.072 0.928 44 H 0.093 0.907 45 H 0.052 0.948 46 H 0.089 0.911 47 H 0.025 0.975 48 H 0.059 0.941 49 H 0.046 0.954 50 H 0.049 0.951 51 H 0.080 0.920 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.282 -3.763 21.051 21.635 hybrid contribution 0.331 -0.380 -1.243 1.341 sum -2.951 -4.143 19.808 20.451 Atomic orbital electron populations 1.22298 0.94644 1.03866 1.01930 1.22458 0.95523 0.81761 1.04668 1.48152 1.64164 1.14875 1.05673 1.17371 0.77288 0.85436 0.83257 1.90733 1.49672 1.17314 1.87700 1.20102 1.14014 0.99727 0.85526 1.22721 1.02269 0.95260 0.98993 1.21236 1.08362 1.01809 0.93060 1.22648 1.01668 0.90879 0.96397 1.44281 1.41929 1.18110 1.04636 1.22021 0.95045 0.81645 1.03467 1.21995 0.99470 0.98059 1.01731 1.20899 0.94062 0.94041 0.82983 0.91107 1.21121 0.97864 0.97888 0.96275 1.20775 0.97528 1.03566 0.93467 1.20096 0.84501 0.90820 0.99971 1.44243 1.20535 1.59886 1.07809 1.19403 0.91050 1.22695 1.06337 0.92490 1.25762 0.96081 0.98816 1.02095 1.70042 1.03534 1.44767 1.37790 0.85312 0.78128 0.78409 0.79158 1.20036 1.21648 1.21937 1.20319 0.95232 0.94960 0.85766 1.23024 0.95228 0.99887 0.99594 0.93688 0.88288 0.92084 0.90682 0.86836 0.80306 0.81748 0.78241 0.86138 0.90812 0.89345 0.94455 0.91481 0.93309 0.92764 0.90744 0.94843 0.91147 0.97480 0.94116 0.95355 0.95107 0.91998 0.94251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.87 8.56 71.98 0.62 -3.25 16 2 C 0.08 2.04 5.61 86.38 0.48 2.52 16 3 N -0.60 -20.16 2.30 -804.17 -1.85 -22.01 16 4 C 0.58 19.75 6.73 86.45 0.58 20.33 16 5 O -0.57 -22.41 11.34 -4.31 -0.05 -22.46 16 6 C -0.08 -2.27 6.70 40.35 0.27 -2.00 16 7 C -0.17 -3.76 7.49 22.57 0.17 -3.60 16 8 C -0.22 -3.97 10.81 22.01 0.24 -3.74 16 9 C 0.02 0.33 11.37 83.48 0.95 1.28 16 10 N -0.42 -9.61 2.76 -511.01 -1.41 -11.03 16 11 C 0.10 2.02 6.07 86.38 0.52 2.54 16 12 C -0.15 -3.13 10.17 71.98 0.73 -2.40 16 13 C 0.18 7.36 2.30 44.70 0.10 7.46 16 14 H 0.07 3.25 6.39 -2.39 -0.02 3.24 16 15 C -0.09 -3.87 4.14 29.51 0.12 -3.75 16 16 C -0.11 -5.19 4.98 28.36 0.14 -5.04 16 17 C 0.17 8.35 5.23 83.58 0.44 8.79 16 18 N -0.60 -30.75 2.59 -707.85 -1.84 -32.59 16 19 C -0.26 -14.49 9.61 84.03 0.81 -13.68 16 20 H 0.06 3.14 7.83 -2.91 -0.02 3.11 16 21 C -0.03 -1.68 5.28 84.86 0.45 -1.23 16 22 N -0.92 -50.27 8.86 21.65 0.19 -50.08 16 23 Si 0.96 44.04 29.55 68.60 2.03 46.07 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 25 H -0.29 -13.20 7.11 99.48 0.71 -12.50 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 27 C 0.17 7.58 5.18 87.59 0.45 8.03 16 28 C -0.14 -5.70 5.79 31.87 0.18 -5.52 16 29 H 0.04 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.10 1.60 8.13 -2.39 -0.02 1.58 16 31 H 0.06 1.45 6.63 -2.39 -0.02 1.43 16 32 H 0.07 2.04 7.80 -2.39 -0.02 2.03 16 33 H 0.11 2.55 4.73 -2.39 -0.01 2.54 16 34 H 0.18 3.51 3.26 -2.91 -0.01 3.50 16 35 H 0.16 2.02 8.06 -2.91 -0.02 2.00 16 36 H 0.20 1.78 8.06 -2.91 -0.02 1.75 16 37 H 0.12 1.52 8.13 -2.38 -0.02 1.51 16 38 H 0.07 1.92 6.95 -2.38 -0.02 1.90 16 39 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 40 H 0.04 1.04 7.23 -2.39 -0.02 1.02 16 41 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.05 1.97 7.86 -2.39 -0.02 1.95 16 43 H 0.05 2.40 5.96 -2.39 -0.01 2.39 16 44 H 0.07 3.77 5.22 -2.39 -0.01 3.75 16 45 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 3.85 6.07 -2.39 -0.01 3.84 16 47 H 0.01 0.34 8.12 -2.38 -0.02 0.32 16 48 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 49 H 0.03 1.28 8.00 -2.39 -0.02 1.26 16 50 H 0.03 1.38 6.88 -2.39 -0.02 1.37 16 51 H 0.06 2.58 6.11 -2.39 -0.01 2.57 16 52 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 Total: -1.00 -65.02 381.19 5.24 -59.77 By element: Atomic # 1 Polarization: 24.67 SS G_CDS: 0.91 Total: 25.58 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: 7.26 Total: 6.74 kcal Atomic # 7 Polarization: -110.80 SS G_CDS: -4.91 Total: -115.71 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.07 kcal Total: -65.02 5.24 -59.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000998189299.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.803 kcal (2) G-P(sol) polarization free energy of solvation -65.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.029 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds