Wall clock time and date at job start Tue Mar 31 2020 18:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46499 * 109.47072 * 2 1 4 4 C 1.36446 * 124.85689 * 264.97464 * 3 2 1 5 5 C 1.34486 * 108.86165 * 179.73403 * 4 3 2 6 6 C 1.46685 * 106.32640 * 0.43721 * 5 4 3 7 7 C 1.47273 * 126.93853 * 179.83019 * 6 5 4 8 8 O 1.21632 * 119.99864 * 179.68634 * 7 6 5 9 9 N 1.34775 * 119.99970 * 359.68593 * 7 6 5 10 10 C 1.46496 * 120.00059 * 180.02562 * 9 7 6 11 11 H 1.09010 * 109.46946 * 34.99826 * 10 9 7 12 12 C 1.53000 * 109.47184 * 275.00262 * 10 9 7 13 13 C 1.52999 * 109.47356 * 154.99687 * 10 9 7 14 14 H 1.08999 * 109.49716 * 304.93757 * 13 10 9 15 15 C 1.53042 * 109.52252 * 184.85314 * 13 10 9 16 16 C 1.53040 * 109.53399 * 178.67024 * 15 13 10 17 17 C 1.52757 * 109.38837 * 61.23930 * 16 15 13 18 18 N 1.46933 * 109.00863 * 305.59166 * 17 16 15 19 19 C 1.36935 * 120.62781 * 233.58305 * 18 17 16 20 20 H 1.07995 * 119.99873 * 152.09995 * 19 18 17 21 21 C 1.38811 * 119.99806 * 332.09376 * 19 18 17 22 22 N 1.31615 * 120.00651 * 335.28172 * 21 19 18 23 23 Si 1.86803 * 119.99607 * 155.00135 * 21 19 18 24 24 H 1.48496 * 109.47436 * 60.00138 * 23 21 19 25 25 H 1.48503 * 109.47168 * 180.02562 * 23 21 19 26 26 H 1.48498 * 109.47355 * 300.00110 * 23 21 19 27 27 C 1.46923 * 118.73785 * 53.30252 * 18 17 16 28 28 C 1.34656 * 124.84965 * 85.00208 * 3 2 1 29 29 C 1.50701 * 125.80020 * 359.95848 * 28 3 2 30 30 H 1.09000 * 109.46919 * 300.00166 * 1 2 3 31 31 H 1.09011 * 109.46952 * 59.99613 * 1 2 3 32 32 H 1.08998 * 109.47413 * 179.97438 * 1 2 3 33 33 H 1.09005 * 109.46727 * 240.00529 * 2 1 3 34 34 H 1.08997 * 109.47119 * 120.00352 * 2 1 3 35 35 H 1.08003 * 125.56728 * 0.02865 * 4 3 2 36 36 H 1.08000 * 126.83675 * 180.26310 * 5 4 3 37 37 H 0.96998 * 119.99618 * 359.97438 * 9 7 6 38 38 H 1.09003 * 109.47352 * 179.97438 * 12 10 9 39 39 H 1.09002 * 109.46490 * 299.99753 * 12 10 9 40 40 H 1.08994 * 109.47486 * 59.99591 * 12 10 9 41 41 H 1.08990 * 109.46013 * 298.68790 * 15 13 10 42 42 H 1.09000 * 109.45871 * 58.64982 * 15 13 10 43 43 H 1.09003 * 109.50007 * 181.32125 * 16 15 13 44 44 H 1.09008 * 109.49676 * 301.38120 * 16 15 13 45 45 H 1.08994 * 109.51278 * 185.70471 * 17 16 15 46 46 H 1.09000 * 109.43033 * 65.42089 * 17 16 15 47 47 H 0.97009 * 119.99439 * 353.96783 * 22 21 19 48 48 H 1.09006 * 109.58528 * 66.43409 * 27 18 17 49 49 H 1.09001 * 109.58720 * 186.85700 * 27 18 17 50 50 H 1.09001 * 109.47006 * 269.99672 * 29 28 3 51 51 H 1.08997 * 109.47256 * 29.99800 * 29 28 3 52 52 H 1.09003 * 109.47468 * 149.99807 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3707 2.0837 -1.1153 5 6 2.7655 3.3154 -0.7467 6 6 2.6536 3.3640 0.7151 7 6 2.9757 4.5041 1.5899 8 8 2.8296 4.4073 2.7936 9 7 3.4325 5.6546 1.0569 10 6 3.7534 6.7884 1.9272 11 1 4.1636 6.4200 2.8675 12 6 2.4824 7.5933 2.2058 13 6 4.7839 7.6849 1.2377 14 1 5.6549 7.0912 0.9603 15 6 5.2103 8.8022 2.1928 16 6 6.2655 9.6795 1.5154 17 6 5.6672 10.3162 0.2623 18 7 5.1195 9.2579 -0.5973 19 6 5.4966 9.1605 -1.9101 20 1 5.4825 8.2014 -2.4062 21 6 5.8968 10.2947 -2.6032 22 7 5.4791 11.4823 -2.2192 23 14 7.0346 10.1361 -4.0762 24 1 6.3880 9.2919 -5.1126 25 1 7.3104 11.4837 -4.6360 26 1 8.3106 9.5069 -3.6506 27 6 4.1644 8.3024 -0.0199 28 6 2.1840 2.1388 1.1009 29 6 1.9000 1.7096 2.5173 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.3337 1.7130 -2.1291 36 1 3.1011 4.1095 -1.3972 37 1 3.5494 5.7315 0.0970 38 1 2.7211 8.4367 2.8538 39 1 2.0723 7.9616 1.2655 40 1 1.7483 6.9546 2.6970 41 1 4.3433 9.4103 2.4502 42 1 5.6290 8.3649 3.0992 43 1 6.5859 10.4610 2.2045 44 1 7.1229 9.0671 1.2359 45 1 6.4436 10.8592 -0.2763 46 1 4.8705 11.0025 0.5494 47 1 4.8236 11.5594 -1.5082 48 1 3.2427 8.8212 0.2437 49 1 3.9497 7.5171 -0.7448 50 1 0.8665 1.9480 2.7688 51 1 2.0579 0.6351 2.6099 52 1 2.5700 2.2353 3.1976 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025519868.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:08:10 Heat of formation + Delta-G solvation = -5.019731 kcal Electronic energy + Delta-G solvation = -29522.041213 eV Core-core repulsion = 25714.347475 eV Total energy + Delta-G solvation = -3807.693738 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.35912 -40.76363 -39.40113 -36.80533 -35.03840 -34.72171 -32.57358 -32.45911 -32.22519 -30.25166 -29.41498 -27.36202 -27.04409 -25.58498 -24.51812 -23.95403 -23.06625 -21.97489 -20.88810 -20.37628 -19.65565 -19.32669 -18.36830 -16.99931 -16.94583 -16.35422 -16.18037 -16.14182 -15.60741 -15.55645 -15.44023 -15.34239 -14.94653 -14.66888 -14.36386 -14.22378 -14.10793 -13.83809 -13.78069 -13.69097 -13.60486 -13.50106 -12.99756 -12.89598 -12.76096 -12.73166 -12.60792 -12.42172 -12.10940 -12.09015 -11.90748 -11.83864 -11.71453 -11.60617 -11.37715 -11.07441 -10.78354 -10.42389 -10.06119 -9.52919 -9.09855 -8.88557 -8.21213 -5.36566 0.76433 1.50446 1.58980 1.66658 1.85184 1.86115 2.46317 2.59954 2.67356 3.23484 3.49354 3.79968 3.81578 3.85441 3.90975 3.98339 4.01161 4.11585 4.16075 4.25214 4.30496 4.39299 4.40162 4.42046 4.56273 4.58887 4.60083 4.69157 4.75206 4.79736 4.81830 4.85654 4.90130 4.94058 5.00143 5.05391 5.08003 5.12399 5.16961 5.22118 5.24333 5.28655 5.32492 5.38194 5.56709 5.63858 5.80203 5.85951 6.12295 6.37954 6.42222 6.69078 7.09297 7.37589 7.81120 8.26398 9.03231 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014058 B = 0.002850 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1991.321833 B = 9823.578951 C =11376.444602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.088 3.912 3 N -0.436 5.436 4 C -0.007 4.007 5 C -0.189 4.189 6 C -0.273 4.273 7 C 0.587 3.413 8 O -0.588 6.588 9 N -0.716 5.716 10 C 0.161 3.839 11 H 0.079 0.921 12 C -0.156 4.156 13 C -0.096 4.096 14 H 0.060 0.940 15 C -0.097 4.097 16 C -0.127 4.127 17 C 0.153 3.847 18 N -0.617 5.617 19 C -0.353 4.353 20 H 0.051 0.949 21 C -0.076 4.076 22 N -0.943 5.943 23 Si 1.112 2.888 24 H -0.274 1.274 25 H -0.293 1.293 26 H -0.282 1.282 27 C 0.155 3.845 28 C 0.100 3.900 29 C -0.087 4.087 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.098 0.902 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.198 0.802 36 H 0.145 0.855 37 H 0.403 0.597 38 H 0.076 0.924 39 H 0.055 0.945 40 H 0.050 0.950 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.075 0.925 44 H 0.048 0.952 45 H 0.042 0.958 46 H 0.004 0.996 47 H 0.254 0.746 48 H 0.023 0.977 49 H 0.046 0.954 50 H 0.078 0.922 51 H 0.089 0.911 52 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.506 -24.329 6.683 26.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.032 4.032 3 N -0.112 5.112 4 C -0.134 4.134 5 C -0.213 4.213 6 C -0.283 4.283 7 C 0.378 3.622 8 O -0.471 6.471 9 N -0.366 5.366 10 C 0.056 3.944 11 H 0.097 0.903 12 C -0.215 4.215 13 C -0.116 4.116 14 H 0.079 0.921 15 C -0.135 4.135 16 C -0.166 4.166 17 C 0.028 3.972 18 N -0.341 5.341 19 C -0.482 4.482 20 H 0.069 0.931 21 C -0.273 4.273 22 N -0.586 5.586 23 Si 0.937 3.063 24 H -0.200 1.200 25 H -0.219 1.219 26 H -0.208 1.208 27 C 0.030 3.970 28 C -0.019 4.019 29 C -0.144 4.144 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.116 0.884 33 H 0.134 0.866 34 H 0.121 0.879 35 H 0.215 0.785 36 H 0.163 0.837 37 H 0.239 0.761 38 H 0.095 0.905 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.096 0.904 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.060 0.940 46 H 0.022 0.978 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.064 0.936 50 H 0.097 0.903 51 H 0.108 0.892 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -7.872 -23.891 6.323 25.937 hybrid contribution -0.835 -0.156 0.399 0.939 sum -8.707 -24.047 6.722 26.443 Atomic orbital electron populations 1.22151 0.93685 1.04214 1.02397 1.22246 0.96053 0.78495 1.06359 1.44017 1.49204 1.13019 1.04972 1.22148 1.06228 0.92446 0.92556 1.22204 1.07801 0.98587 0.92686 1.20236 1.18404 0.95381 0.94306 1.17701 0.75492 0.82139 0.86851 1.90661 1.56499 1.83783 1.16110 1.45932 1.66786 1.12751 1.11144 1.20804 0.94921 0.85238 0.93422 0.90269 1.22185 0.97238 1.00114 1.01913 1.21701 0.97376 0.96156 0.96400 0.92144 1.21419 0.98719 0.96035 0.97350 1.21859 0.98251 0.99441 0.97014 1.20753 0.95336 0.90243 0.90891 1.44326 1.48984 1.33644 1.07138 1.20211 1.44747 0.94531 0.88746 0.93121 1.27132 1.03268 0.92158 1.04702 1.70893 1.31367 1.25288 1.31008 0.82888 0.75075 0.75269 0.73051 1.20010 1.21933 1.20830 1.21067 0.90942 0.91742 0.93224 1.20489 1.00252 0.90509 0.90607 1.20504 1.03105 1.02259 0.88551 0.92987 0.92517 0.88356 0.86594 0.87871 0.78506 0.83722 0.76148 0.90483 0.92601 0.93121 0.91501 0.90429 0.90608 0.93273 0.93992 0.97765 0.93611 0.95882 0.93550 0.90335 0.89238 0.90503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.21 10.24 71.98 0.74 -0.47 16 2 C 0.09 0.70 6.45 86.38 0.56 1.26 16 3 N -0.44 -7.33 2.69 -509.91 -1.37 -8.70 16 4 C -0.01 -0.13 11.33 83.12 0.94 0.81 16 5 C -0.19 -4.52 10.56 23.62 0.25 -4.27 16 6 C -0.27 -7.67 6.29 -19.04 -0.12 -7.79 16 7 C 0.59 19.09 7.77 86.62 0.67 19.77 16 8 O -0.59 -21.53 14.48 -4.13 -0.06 -21.59 16 9 N -0.72 -22.13 5.01 -445.94 -2.23 -24.37 16 10 C 0.16 4.98 2.35 44.99 0.11 5.09 16 11 H 0.08 2.54 7.58 -2.38 -0.02 2.52 16 12 C -0.16 -4.61 8.76 71.98 0.63 -3.98 16 13 C -0.10 -3.27 2.27 -10.72 -0.02 -3.29 16 14 H 0.06 2.23 8.14 -2.39 -0.02 2.21 16 15 C -0.10 -3.11 4.89 30.62 0.15 -2.96 16 16 C -0.13 -4.72 6.06 30.53 0.19 -4.53 16 17 C 0.15 7.34 4.66 86.22 0.40 7.74 16 18 N -0.62 -31.05 2.86 -699.93 -2.00 -33.05 16 19 C -0.35 -19.80 9.49 84.03 0.80 -19.00 16 20 H 0.05 2.83 7.94 -2.91 -0.02 2.80 16 21 C -0.08 -4.37 4.69 84.86 0.40 -3.98 16 22 N -0.94 -58.04 12.40 21.65 0.27 -57.78 16 23 Si 1.11 51.27 29.99 68.60 2.06 53.33 16 24 H -0.27 -11.70 7.11 99.48 0.71 -10.99 16 25 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 26 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 27 C 0.16 6.40 5.26 86.36 0.45 6.85 16 28 C 0.10 2.29 6.89 41.78 0.29 2.58 16 29 C -0.09 -1.67 9.52 71.24 0.68 -0.99 16 30 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 32 H 0.10 0.27 8.14 -2.39 -0.02 0.26 16 33 H 0.12 0.43 8.11 -2.38 -0.02 0.41 16 34 H 0.10 0.57 7.05 -2.39 -0.02 0.55 16 35 H 0.20 2.11 8.06 -2.91 -0.02 2.08 16 36 H 0.15 3.32 7.70 -2.91 -0.02 3.30 16 37 H 0.40 12.06 6.39 -92.71 -0.59 11.47 16 38 H 0.08 2.07 6.60 -2.39 -0.02 2.05 16 39 H 0.06 1.72 6.23 -2.39 -0.01 1.71 16 40 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.07 2.07 6.63 -2.39 -0.02 2.05 16 42 H 0.08 2.11 8.14 -2.39 -0.02 2.09 16 43 H 0.08 2.46 8.14 -2.39 -0.02 2.44 16 44 H 0.05 1.90 8.14 -2.38 -0.02 1.88 16 45 H 0.04 2.28 6.30 -2.39 -0.02 2.27 16 46 H 0.00 0.21 7.87 -2.39 -0.02 0.20 16 47 H 0.25 15.94 6.71 -92.70 -0.62 15.31 16 48 H 0.02 0.97 6.07 -2.38 -0.01 0.96 16 49 H 0.05 1.90 6.74 -2.39 -0.02 1.88 16 50 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 51 H 0.09 1.11 7.02 -2.39 -0.02 1.10 16 52 H 0.08 1.89 6.47 -2.39 -0.02 1.88 16 Total: -1.00 -73.93 398.97 4.23 -69.69 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.46 Total: 29.66 kcal Atomic # 6 Polarization: -14.29 SS G_CDS: 7.10 Total: -7.19 kcal Atomic # 7 Polarization: -118.56 SS G_CDS: -5.33 Total: -123.89 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: -0.06 Total: -21.59 kcal Atomic # 14 Polarization: 51.27 SS G_CDS: 2.06 Total: 53.33 kcal Total: -73.93 4.23 -69.69 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025519868.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.674 kcal (2) G-P(sol) polarization free energy of solvation -73.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds