Wall clock time and date at job start Tue Mar 31 2020 17:32:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 N 1.46499 * 109.47127 * 119.99861 * 2 1 3 5 5 C 1.35540 * 125.67897 * 305.69039 * 4 2 1 6 6 C 1.35455 * 108.87043 * 180.26495 * 5 4 2 7 7 C 1.39837 * 107.86871 * 359.76435 * 6 5 4 8 8 C 1.37656 * 125.68003 * 125.55608 * 4 2 1 9 9 C 1.46677 * 126.23126 * 0.02562 * 8 4 2 10 10 O 1.21690 * 119.99771 * 358.96721 * 9 8 4 11 11 N 1.34779 * 120.00023 * 178.96383 * 9 8 4 12 12 C 1.46502 * 119.99677 * 174.79820 * 11 9 8 13 13 H 1.09001 * 109.47120 * 35.00265 * 12 11 9 14 14 C 1.52993 * 109.46958 * 275.00109 * 12 11 9 15 15 C 1.52999 * 109.46543 * 155.00272 * 12 11 9 16 16 H 1.09002 * 109.52344 * 304.91667 * 15 12 11 17 17 C 1.53045 * 109.49672 * 184.83646 * 15 12 11 18 18 C 1.53032 * 109.53961 * 178.68315 * 17 15 12 19 19 C 1.52767 * 109.38417 * 61.24033 * 18 17 15 20 20 N 1.46924 * 109.00630 * 305.59080 * 19 18 17 21 21 C 1.36935 * 120.62522 * 233.58425 * 20 19 18 22 22 H 1.08004 * 120.00255 * 148.93596 * 21 20 19 23 23 C 1.38812 * 120.00249 * 328.92770 * 21 20 19 24 24 N 1.31618 * 120.00241 * 336.45590 * 23 21 20 25 25 Si 1.86805 * 120.00037 * 156.16746 * 23 21 20 26 26 H 1.48507 * 109.46785 * 60.00927 * 25 23 21 27 27 H 1.48500 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47462 * 300.00717 * 25 23 21 29 29 C 1.46923 * 118.74233 * 53.30633 * 20 19 18 30 30 H 1.08999 * 109.47233 * 299.99782 * 1 2 3 31 31 H 1.08999 * 109.47280 * 60.00207 * 1 2 3 32 32 H 1.09008 * 109.46660 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47306 * 239.99434 * 2 1 3 34 34 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46986 * 299.99972 * 3 2 1 36 36 H 1.09002 * 109.47503 * 60.00132 * 3 2 1 37 37 H 1.07995 * 125.56323 * 359.97438 * 5 4 2 38 38 H 1.08001 * 126.06555 * 179.79198 * 6 5 4 39 39 H 1.07990 * 126.45920 * 180.02562 * 7 6 5 40 40 H 0.96993 * 119.99731 * 354.79953 * 11 9 8 41 41 H 1.09001 * 109.47332 * 300.00026 * 14 12 11 42 42 H 1.08997 * 109.47318 * 60.00552 * 14 12 11 43 43 H 1.09003 * 109.47063 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.46120 * 298.70656 * 17 15 12 45 45 H 1.09003 * 109.45515 * 58.67419 * 17 15 12 46 46 H 1.08997 * 109.49998 * 181.31947 * 18 17 15 47 47 H 1.09000 * 109.49852 * 301.38027 * 18 17 15 48 48 H 1.08993 * 109.50498 * 185.70761 * 19 18 17 49 49 H 1.09000 * 109.42962 * 65.42429 * 19 18 17 50 50 H 0.97010 * 119.99581 * 353.95935 * 24 23 21 51 51 H 1.08994 * 109.58483 * 66.43169 * 29 20 19 52 52 H 1.08995 * 109.58448 * 186.85541 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6763 -0.3959 2.4742 6 6 2.3285 -1.2407 3.3082 7 6 3.1049 -2.1014 2.5260 8 6 2.8990 -1.7485 1.2092 9 6 3.5120 -2.3807 0.0362 10 8 3.2387 -1.9840 -1.0812 11 7 4.3781 -3.4010 0.1960 12 6 4.9025 -4.1069 -0.9757 13 1 5.0330 -3.4017 -1.7965 14 6 3.9184 -5.2008 -1.3947 15 6 6.2512 -4.7401 -0.6280 16 1 6.9259 -3.9737 -0.2463 17 6 6.8562 -5.3745 -1.8825 18 6 8.2203 -5.9795 -1.5432 19 6 8.0431 -7.0692 -0.4873 20 7 7.3285 -6.5061 0.6663 21 6 7.8480 -6.6130 1.9288 22 1 7.6526 -5.8427 2.6602 23 6 8.6256 -7.7115 2.2686 24 7 8.5010 -8.8383 1.5999 25 14 9.8547 -7.5881 3.6699 26 1 9.1397 -7.2521 4.9274 27 1 10.5546 -8.8880 3.8303 28 1 10.8472 -6.5262 3.3659 29 6 6.0490 -5.8207 0.4389 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.9984 0.3879 2.7781 38 1 2.2605 -1.2485 4.3860 39 1 3.7449 -2.8935 2.8856 40 1 4.6540 -3.6678 1.0868 41 1 3.7879 -5.9061 -0.5739 42 1 2.9575 -4.7497 -1.6424 43 1 4.3088 -5.7264 -2.2662 44 1 6.1928 -6.1576 -2.2495 45 1 6.9785 -4.6121 -2.6519 46 1 8.6610 -6.4104 -2.4421 47 1 8.8766 -5.2014 -1.1534 48 1 9.0211 -7.4312 -0.1702 49 1 7.4657 -7.8920 -0.9088 50 1 7.8065 -8.9297 0.9288 51 1 5.3056 -6.5396 0.0945 52 1 5.7116 -5.3593 1.3670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001025627898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:35 Heat of formation + Delta-G solvation = 14.879462 kcal Electronic energy + Delta-G solvation = -29798.228759 eV Core-core repulsion = 25991.397914 eV Total energy + Delta-G solvation = -3806.830845 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.59177 -39.54727 -37.98664 -35.76593 -35.23035 -33.20196 -31.37182 -30.37194 -29.98273 -29.10047 -28.03286 -27.65309 -25.10962 -24.33896 -22.97866 -22.39927 -21.94075 -20.72732 -20.04456 -19.45582 -18.56998 -17.78594 -17.27780 -16.04753 -15.69359 -15.40626 -14.95573 -14.71055 -14.51699 -14.27654 -14.14818 -14.02185 -13.73194 -13.58857 -13.36394 -13.00065 -12.82511 -12.73977 -12.62727 -12.53400 -12.38739 -12.28256 -12.17565 -12.01266 -11.65281 -11.62609 -11.32577 -11.00282 -10.86942 -10.57936 -10.33717 -10.21152 -10.05153 -9.96417 -9.84153 -9.72713 -9.22972 -9.00870 -8.84265 -8.36728 -8.27332 -6.84999 -6.05359 -3.26769 1.43108 2.52607 2.67267 3.36202 3.41806 3.49263 3.52701 3.70497 4.35782 4.57631 4.62222 4.70600 4.82996 4.89074 4.98669 5.12570 5.16523 5.16801 5.28061 5.32109 5.33565 5.36346 5.40644 5.49284 5.55805 5.61506 5.62000 5.71814 5.76506 5.78120 5.92209 5.99881 6.03545 6.12396 6.14313 6.15088 6.25582 6.39504 6.48201 6.52323 6.58220 6.65667 6.71836 6.74218 6.85244 6.93460 7.10683 7.14010 7.21083 7.59862 8.01902 8.24165 8.58911 9.12457 9.84250 10.30630 11.21691 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002898 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.966520 B = 9659.884134 C =10908.608149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.104 3.896 3 C -0.158 4.158 4 N -0.401 5.401 5 C 0.013 3.987 6 C -0.208 4.208 7 C -0.139 4.139 8 C -0.052 4.052 9 C 0.590 3.410 10 O -0.559 6.559 11 N -0.707 5.707 12 C 0.152 3.848 13 H 0.084 0.916 14 C -0.165 4.165 15 C -0.113 4.113 16 H 0.073 0.927 17 C -0.100 4.100 18 C -0.137 4.137 19 C 0.151 3.849 20 N -0.597 5.597 21 C -0.351 4.351 22 H 0.053 0.947 23 C -0.021 4.021 24 N -0.915 5.915 25 Si 1.064 2.936 26 H -0.292 1.292 27 H -0.286 1.286 28 H -0.293 1.293 29 C 0.153 3.847 30 H 0.060 0.940 31 H 0.075 0.925 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.163 0.837 38 H 0.141 0.859 39 H 0.144 0.856 40 H 0.405 0.595 41 H 0.066 0.934 42 H 0.052 0.948 43 H 0.068 0.932 44 H 0.059 0.941 45 H 0.049 0.951 46 H 0.052 0.948 47 H 0.057 0.943 48 H 0.075 0.925 49 H 0.016 0.984 50 H 0.269 0.731 51 H 0.024 0.976 52 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.162 17.014 -3.334 22.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.003 3.997 3 C -0.216 4.216 4 N -0.075 5.075 5 C -0.122 4.122 6 C -0.232 4.232 7 C -0.165 4.165 8 C -0.165 4.165 9 C 0.379 3.621 10 O -0.440 6.440 11 N -0.357 5.357 12 C 0.048 3.952 13 H 0.102 0.898 14 C -0.223 4.223 15 C -0.134 4.134 16 H 0.092 0.908 17 C -0.138 4.138 18 C -0.176 4.176 19 C 0.025 3.975 20 N -0.321 5.321 21 C -0.480 4.480 22 H 0.071 0.929 23 C -0.224 4.224 24 N -0.554 5.554 25 Si 0.894 3.106 26 H -0.219 1.219 27 H -0.211 1.211 28 H -0.221 1.221 29 C 0.027 3.973 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.082 0.918 35 H 0.093 0.907 36 H 0.079 0.921 37 H 0.180 0.820 38 H 0.159 0.841 39 H 0.162 0.838 40 H 0.241 0.759 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.087 0.913 44 H 0.078 0.922 45 H 0.068 0.932 46 H 0.070 0.930 47 H 0.075 0.925 48 H 0.093 0.907 49 H 0.034 0.966 50 H 0.080 0.920 51 H 0.042 0.958 52 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.257 16.599 -3.633 21.552 hybrid contribution -1.164 0.828 -0.207 1.443 sum -14.421 17.427 -3.840 22.944 Atomic orbital electron populations 1.22142 0.93556 1.03071 1.02895 1.21967 0.95184 0.94244 0.88349 1.22135 1.02270 0.94445 1.02747 1.44159 1.32781 1.24118 1.06429 1.21868 1.04355 1.03211 0.82762 1.20811 1.03233 0.99833 0.99304 1.21432 1.02544 1.01717 0.90834 1.20093 1.03947 0.97599 0.94859 1.17001 0.78738 0.79433 0.86972 1.90676 1.63210 1.64191 1.25884 1.45849 1.45351 1.33423 1.11127 1.21038 0.93352 0.93315 0.87529 0.89795 1.22269 0.98990 0.98837 1.02195 1.21949 0.93969 0.99160 0.98312 0.90844 1.21415 0.97422 0.99190 0.95804 1.21992 0.96069 1.00340 0.99227 1.20847 0.97525 0.92398 0.86722 1.44047 1.18414 1.66322 1.03271 1.19922 1.33748 1.05004 0.89360 0.92904 1.25876 1.02405 0.91140 1.02985 1.70776 1.35019 1.23648 1.25974 0.83545 0.76407 0.75558 0.75137 1.21932 1.21118 1.22058 1.21001 0.88967 0.92424 0.94940 0.92054 0.90573 0.91781 0.85042 0.91809 0.90655 0.92144 0.81966 0.84129 0.83785 0.75881 0.91528 0.92940 0.91345 0.92204 0.93239 0.92982 0.92456 0.90704 0.96607 0.91998 0.95784 0.93235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.22 9.15 37.16 0.34 -0.88 16 2 C 0.10 1.04 3.47 -67.93 -0.24 0.80 16 3 C -0.16 -1.29 9.31 37.16 0.35 -0.94 16 4 N -0.40 -4.66 2.64 -105.81 -0.28 -4.94 16 5 C 0.01 0.13 10.34 -16.91 -0.17 -0.04 16 6 C -0.21 -2.24 10.81 -39.98 -0.43 -2.68 16 7 C -0.14 -1.71 10.35 -39.12 -0.40 -2.12 16 8 C -0.05 -0.70 6.89 -81.98 -0.56 -1.26 16 9 C 0.59 8.82 7.75 -12.85 -0.10 8.72 16 10 O -0.56 -9.39 13.98 5.20 0.07 -9.32 16 11 N -0.71 -10.03 4.99 -55.12 -0.28 -10.30 16 12 C 0.15 2.23 2.40 -67.93 -0.16 2.07 16 13 H 0.08 1.29 7.51 -51.93 -0.39 0.90 16 14 C -0.16 -2.31 8.76 37.15 0.33 -1.98 16 15 C -0.11 -1.87 2.27 -90.50 -0.21 -2.08 16 16 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.10 -1.62 4.89 -26.69 -0.13 -1.75 16 18 C -0.14 -2.53 6.06 -26.83 -0.16 -2.69 16 19 C 0.15 3.45 4.69 -3.93 -0.02 3.43 16 20 N -0.60 -14.44 2.81 -172.59 -0.49 -14.93 16 21 C -0.35 -9.56 9.46 -15.06 -0.14 -9.70 16 22 H 0.05 1.44 7.94 -52.48 -0.42 1.02 16 23 C -0.02 -0.60 4.70 -17.43 -0.08 -0.68 16 24 N -0.91 -27.07 12.51 55.49 0.69 -26.38 16 25 Si 1.06 24.93 29.98 -169.99 -5.10 19.84 16 26 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 27 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 28 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 29 C 0.15 3.02 5.26 -3.71 -0.02 3.00 16 30 H 0.06 0.39 7.68 -51.93 -0.40 0.00 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.13 1.64 5.34 -51.93 -0.28 1.37 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.42 8.03 -51.93 -0.42 0.01 16 37 H 0.16 1.12 7.88 -52.49 -0.41 0.71 16 38 H 0.14 1.24 8.06 -52.49 -0.42 0.81 16 39 H 0.14 1.62 7.45 -52.49 -0.39 1.23 16 40 H 0.41 5.47 6.17 -40.82 -0.25 5.22 16 41 H 0.07 0.97 6.23 -51.93 -0.32 0.64 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.07 0.90 6.59 -51.93 -0.34 0.56 16 44 H 0.06 0.94 6.62 -51.93 -0.34 0.60 16 45 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 47 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 48 H 0.07 1.93 6.51 -51.93 -0.34 1.59 16 49 H 0.02 0.37 7.85 -51.93 -0.41 -0.04 16 50 H 0.27 8.02 6.75 -40.82 -0.28 7.75 16 51 H 0.02 0.48 6.06 -51.93 -0.31 0.17 16 52 H 0.05 0.96 6.75 -51.93 -0.35 0.61 16 LS Contribution 397.50 15.07 5.99 5.99 Total: -1.00 -31.56 397.50 -9.88 -41.44 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: -8.68 Total: 7.37 kcal Atomic # 6 Polarization: -6.94 SS G_CDS: -1.82 Total: -8.77 kcal Atomic # 7 Polarization: -56.20 SS G_CDS: -0.35 Total: -56.54 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.07 Total: -9.32 kcal Atomic # 14 Polarization: 24.93 SS G_CDS: -5.10 Total: 19.84 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -31.56 -9.88 -41.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025627898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.315 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds