Wall clock time and date at job start Tue Mar 31 2020 17:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46897 * 2 1 4 4 N 1.46499 * 109.47127 * 119.99861 * 2 1 3 5 5 C 1.35540 * 125.67897 * 305.69039 * 4 2 1 6 6 C 1.35455 * 108.87043 * 180.26495 * 5 4 2 7 7 C 1.39837 * 107.86871 * 359.76435 * 6 5 4 8 8 C 1.37656 * 125.68003 * 125.55608 * 4 2 1 9 9 C 1.46677 * 126.23126 * 0.02562 * 8 4 2 10 10 O 1.21690 * 119.99771 * 358.96721 * 9 8 4 11 11 N 1.34779 * 120.00023 * 178.96383 * 9 8 4 12 12 C 1.46502 * 119.99677 * 174.79820 * 11 9 8 13 13 H 1.09001 * 109.47120 * 35.00265 * 12 11 9 14 14 C 1.52993 * 109.46958 * 275.00109 * 12 11 9 15 15 C 1.52999 * 109.46543 * 155.00272 * 12 11 9 16 16 H 1.09002 * 109.52344 * 304.91667 * 15 12 11 17 17 C 1.53045 * 109.49672 * 184.83646 * 15 12 11 18 18 C 1.53032 * 109.53961 * 178.68315 * 17 15 12 19 19 C 1.52767 * 109.38417 * 61.24033 * 18 17 15 20 20 N 1.46924 * 109.00630 * 305.59080 * 19 18 17 21 21 C 1.36935 * 120.62522 * 233.58425 * 20 19 18 22 22 H 1.08004 * 120.00255 * 148.93596 * 21 20 19 23 23 C 1.38812 * 120.00249 * 328.92770 * 21 20 19 24 24 N 1.31618 * 120.00241 * 336.45590 * 23 21 20 25 25 Si 1.86805 * 120.00037 * 156.16746 * 23 21 20 26 26 H 1.48507 * 109.46785 * 60.00927 * 25 23 21 27 27 H 1.48500 * 109.46996 * 180.02562 * 25 23 21 28 28 H 1.48499 * 109.47462 * 300.00717 * 25 23 21 29 29 C 1.46923 * 118.74233 * 53.30633 * 20 19 18 30 30 H 1.08999 * 109.47233 * 299.99782 * 1 2 3 31 31 H 1.08999 * 109.47280 * 60.00207 * 1 2 3 32 32 H 1.09008 * 109.46660 * 180.02562 * 1 2 3 33 33 H 1.08999 * 109.47306 * 239.99434 * 2 1 3 34 34 H 1.09000 * 109.47263 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.46986 * 299.99972 * 3 2 1 36 36 H 1.09002 * 109.47503 * 60.00132 * 3 2 1 37 37 H 1.07995 * 125.56323 * 359.97438 * 5 4 2 38 38 H 1.08001 * 126.06555 * 179.79198 * 6 5 4 39 39 H 1.07990 * 126.45920 * 180.02562 * 7 6 5 40 40 H 0.96993 * 119.99731 * 354.79953 * 11 9 8 41 41 H 1.09001 * 109.47332 * 300.00026 * 14 12 11 42 42 H 1.08997 * 109.47318 * 60.00552 * 14 12 11 43 43 H 1.09003 * 109.47063 * 180.02562 * 14 12 11 44 44 H 1.09002 * 109.46120 * 298.70656 * 17 15 12 45 45 H 1.09003 * 109.45515 * 58.67419 * 17 15 12 46 46 H 1.08997 * 109.49998 * 181.31947 * 18 17 15 47 47 H 1.09000 * 109.49852 * 301.38027 * 18 17 15 48 48 H 1.08993 * 109.50498 * 185.70761 * 19 18 17 49 49 H 1.09000 * 109.42962 * 65.42429 * 19 18 17 50 50 H 0.97010 * 119.99581 * 353.95935 * 24 23 21 51 51 H 1.08994 * 109.58483 * 66.43169 * 29 20 19 52 52 H 1.08995 * 109.58448 * 186.85541 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6763 -0.3959 2.4742 6 6 2.3285 -1.2407 3.3082 7 6 3.1049 -2.1014 2.5260 8 6 2.8990 -1.7485 1.2092 9 6 3.5120 -2.3807 0.0362 10 8 3.2387 -1.9840 -1.0812 11 7 4.3781 -3.4010 0.1960 12 6 4.9025 -4.1069 -0.9757 13 1 5.0330 -3.4017 -1.7965 14 6 3.9184 -5.2008 -1.3947 15 6 6.2512 -4.7401 -0.6280 16 1 6.9259 -3.9737 -0.2463 17 6 6.8562 -5.3745 -1.8825 18 6 8.2203 -5.9795 -1.5432 19 6 8.0431 -7.0692 -0.4873 20 7 7.3285 -6.5061 0.6663 21 6 7.8480 -6.6130 1.9288 22 1 7.6526 -5.8427 2.6602 23 6 8.6256 -7.7115 2.2686 24 7 8.5010 -8.8383 1.5999 25 14 9.8547 -7.5881 3.6699 26 1 9.1397 -7.2521 4.9274 27 1 10.5546 -8.8880 3.8303 28 1 10.8472 -6.5262 3.3659 29 6 6.0490 -5.8207 0.4389 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0278 0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9564 0.8900 37 1 0.9984 0.3879 2.7781 38 1 2.2605 -1.2485 4.3860 39 1 3.7449 -2.8935 2.8856 40 1 4.6540 -3.6678 1.0868 41 1 3.7879 -5.9061 -0.5739 42 1 2.9575 -4.7497 -1.6424 43 1 4.3088 -5.7264 -2.2662 44 1 6.1928 -6.1576 -2.2495 45 1 6.9785 -4.6121 -2.6519 46 1 8.6610 -6.4104 -2.4421 47 1 8.8766 -5.2014 -1.1534 48 1 9.0211 -7.4312 -0.1702 49 1 7.4657 -7.8920 -0.9088 50 1 7.8065 -8.9297 0.9288 51 1 5.3056 -6.5396 0.0945 52 1 5.7116 -5.3593 1.3670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001025627898.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:32:34 Heat of formation + Delta-G solvation = -2.186507 kcal Electronic energy + Delta-G solvation = -29798.968795 eV Core-core repulsion = 25991.397914 eV Total energy + Delta-G solvation = -3807.570881 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.48367 -40.78644 -39.42705 -36.93927 -36.33280 -34.82608 -32.74660 -32.21573 -30.78279 -30.22754 -29.30700 -28.25579 -27.04048 -25.60793 -24.22538 -23.71580 -23.10154 -22.03079 -21.13470 -20.64442 -19.88612 -19.32452 -18.61522 -17.19606 -16.81151 -16.43874 -16.22419 -16.14137 -15.69684 -15.53009 -15.44141 -15.35373 -15.02274 -14.92455 -14.85250 -14.37079 -13.91362 -13.77254 -13.67463 -13.61400 -13.52207 -13.22893 -13.10729 -12.99221 -12.94247 -12.76415 -12.61205 -12.32309 -12.13647 -12.10711 -11.91316 -11.85619 -11.72846 -11.61317 -11.39423 -11.07352 -10.89521 -10.43706 -10.20731 -9.69685 -9.17246 -8.87617 -8.19886 -5.41042 0.45306 1.59190 1.64235 1.66396 1.82276 1.84908 2.33033 2.36300 2.66513 3.23739 3.46165 3.66045 3.70747 3.85036 3.87605 3.95016 3.95833 4.12134 4.18800 4.23252 4.31599 4.35262 4.39952 4.45151 4.54403 4.56983 4.59653 4.66735 4.73835 4.74537 4.76115 4.87105 4.91509 4.92273 5.02401 5.03387 5.10272 5.15271 5.16223 5.19140 5.23291 5.28672 5.31858 5.35196 5.46706 5.56868 5.82099 5.87880 6.03477 6.35531 6.42695 6.47337 7.09843 7.11037 7.79898 8.26325 9.02703 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015500 B = 0.002898 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.966520 B = 9659.884134 C =10908.608149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.098 3.902 3 C -0.152 4.152 4 N -0.405 5.405 5 C 0.028 3.972 6 C -0.221 4.221 7 C -0.144 4.144 8 C -0.087 4.087 9 C 0.588 3.412 10 O -0.583 6.583 11 N -0.706 5.706 12 C 0.162 3.838 13 H 0.084 0.916 14 C -0.158 4.158 15 C -0.097 4.097 16 H 0.062 0.938 17 C -0.097 4.097 18 C -0.127 4.127 19 C 0.155 3.845 20 N -0.616 5.616 21 C -0.354 4.354 22 H 0.049 0.951 23 C -0.073 4.073 24 N -0.943 5.943 25 Si 1.112 2.888 26 H -0.274 1.274 27 H -0.293 1.293 28 H -0.281 1.281 29 C 0.153 3.847 30 H 0.080 0.920 31 H 0.093 0.907 32 H 0.047 0.953 33 H 0.102 0.898 34 H 0.042 0.958 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.200 0.800 38 H 0.161 0.839 39 H 0.146 0.854 40 H 0.407 0.593 41 H 0.058 0.942 42 H 0.050 0.950 43 H 0.079 0.921 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.075 0.925 47 H 0.049 0.951 48 H 0.038 0.962 49 H 0.005 0.995 50 H 0.254 0.746 51 H 0.025 0.975 52 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.472 19.412 -3.066 25.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.003 4.003 3 C -0.209 4.209 4 N -0.078 5.078 5 C -0.108 4.108 6 C -0.244 4.244 7 C -0.171 4.171 8 C -0.200 4.200 9 C 0.378 3.622 10 O -0.466 6.466 11 N -0.357 5.357 12 C 0.057 3.943 13 H 0.102 0.898 14 C -0.216 4.216 15 C -0.117 4.117 16 H 0.080 0.920 17 C -0.135 4.135 18 C -0.166 4.166 19 C 0.029 3.971 20 N -0.340 5.340 21 C -0.484 4.484 22 H 0.067 0.933 23 C -0.270 4.270 24 N -0.584 5.584 25 Si 0.937 3.063 26 H -0.200 1.200 27 H -0.219 1.219 28 H -0.208 1.208 29 C 0.028 3.972 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.067 0.933 33 H 0.120 0.880 34 H 0.061 0.939 35 H 0.111 0.889 36 H 0.096 0.904 37 H 0.216 0.784 38 H 0.179 0.821 39 H 0.164 0.836 40 H 0.244 0.756 41 H 0.077 0.923 42 H 0.069 0.931 43 H 0.098 0.902 44 H 0.086 0.914 45 H 0.096 0.904 46 H 0.094 0.906 47 H 0.068 0.932 48 H 0.056 0.944 49 H 0.023 0.977 50 H 0.064 0.936 51 H 0.043 0.957 52 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -14.587 19.023 -3.380 24.209 hybrid contribution -0.833 0.128 -0.275 0.887 sum -15.421 19.151 -3.655 24.858 Atomic orbital electron populations 1.22111 0.91523 1.02600 1.04706 1.22051 0.96732 0.94685 0.86840 1.22102 1.00882 0.93429 1.04508 1.44389 1.32275 1.23625 1.07501 1.22487 1.03477 1.03025 0.81798 1.21136 1.03154 0.99703 1.00439 1.21642 1.02645 1.01983 0.90847 1.20015 1.05979 0.99427 0.94588 1.17248 0.78482 0.79221 0.87251 1.90661 1.64102 1.64954 1.26867 1.45817 1.45369 1.33417 1.11052 1.20879 0.92409 0.93321 0.87666 0.89819 1.22206 0.98768 0.98341 1.02288 1.21720 0.94900 0.97630 0.97500 0.91967 1.21418 0.95926 1.00051 0.96084 1.21859 0.97648 0.98600 0.98487 1.20731 0.95235 0.93600 0.87503 1.44288 1.20210 1.66714 1.02797 1.20182 1.33306 1.04385 0.90552 0.93282 1.27169 1.04157 0.90782 1.04894 1.70894 1.35520 1.24890 1.27124 0.82895 0.74717 0.75351 0.73366 1.19986 1.21946 1.20782 1.21098 0.87092 0.92877 0.96106 0.90139 0.88864 0.93345 0.87976 0.93895 0.88903 0.90363 0.78363 0.82146 0.83642 0.75640 0.92334 0.93064 0.90205 0.91408 0.90366 0.90619 0.93239 0.94374 0.97710 0.93580 0.95737 0.93423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 9.15 71.98 0.66 -1.33 16 2 C 0.10 1.84 3.47 44.99 0.16 2.00 16 3 C -0.15 -2.18 9.31 71.98 0.67 -1.51 16 4 N -0.40 -8.89 2.64 -488.66 -1.29 -10.18 16 5 C 0.03 0.49 10.34 83.48 0.86 1.35 16 6 C -0.22 -4.34 10.81 22.01 0.24 -4.10 16 7 C -0.14 -3.48 10.35 22.57 0.23 -3.25 16 8 C -0.09 -2.34 6.89 40.35 0.28 -2.06 16 9 C 0.59 17.75 7.75 86.45 0.67 18.42 16 10 O -0.58 -19.86 13.98 -4.32 -0.06 -19.92 16 11 N -0.71 -20.08 4.99 -446.51 -2.23 -22.31 16 12 C 0.16 4.63 2.40 44.99 0.11 4.74 16 13 H 0.08 2.47 7.51 -2.39 -0.02 2.45 16 14 C -0.16 -4.28 8.76 71.98 0.63 -3.65 16 15 C -0.10 -3.13 2.27 -10.71 -0.02 -3.16 16 16 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 17 C -0.10 -2.94 4.89 30.62 0.15 -2.79 16 18 C -0.13 -4.57 6.06 30.53 0.19 -4.38 16 19 C 0.15 7.24 4.69 86.22 0.40 7.64 16 20 N -0.62 -30.32 2.81 -699.95 -1.97 -32.29 16 21 C -0.35 -19.62 9.46 84.03 0.80 -18.82 16 22 H 0.05 2.70 7.94 -2.91 -0.02 2.68 16 23 C -0.07 -4.16 4.70 84.86 0.40 -3.76 16 24 N -0.94 -57.46 12.51 21.65 0.27 -57.19 16 25 Si 1.11 50.83 29.98 68.60 2.06 52.89 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H -0.29 -13.70 7.11 99.48 0.71 -12.99 16 28 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 29 C 0.15 6.08 5.26 86.36 0.45 6.53 16 30 H 0.08 0.74 7.68 -2.39 -0.02 0.73 16 31 H 0.09 0.89 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.10 2.58 5.34 -2.39 -0.01 2.56 16 34 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.08 0.84 8.03 -2.39 -0.02 0.82 16 37 H 0.20 1.87 7.88 -2.91 -0.02 1.84 16 38 H 0.16 2.41 8.06 -2.91 -0.02 2.39 16 39 H 0.15 3.29 7.45 -2.92 -0.02 3.27 16 40 H 0.41 11.14 6.17 -92.71 -0.57 10.57 16 41 H 0.06 1.68 6.23 -2.39 -0.01 1.66 16 42 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.08 1.97 6.59 -2.39 -0.02 1.96 16 44 H 0.07 1.99 6.62 -2.39 -0.02 1.97 16 45 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 46 H 0.08 2.37 8.14 -2.39 -0.02 2.35 16 47 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 48 H 0.04 2.03 6.51 -2.39 -0.02 2.02 16 49 H 0.00 0.24 7.85 -2.39 -0.02 0.22 16 50 H 0.25 15.79 6.75 -92.70 -0.63 15.16 16 51 H 0.02 0.99 6.06 -2.39 -0.01 0.97 16 52 H 0.05 1.87 6.75 -2.39 -0.02 1.85 16 Total: -1.00 -70.42 397.50 4.13 -66.29 By element: Atomic # 1 Polarization: 30.35 SS G_CDS: 0.48 Total: 30.82 kcal Atomic # 6 Polarization: -14.99 SS G_CDS: 6.87 Total: -8.12 kcal Atomic # 7 Polarization: -116.75 SS G_CDS: -5.22 Total: -121.96 kcal Atomic # 8 Polarization: -19.86 SS G_CDS: -0.06 Total: -19.92 kcal Atomic # 14 Polarization: 50.83 SS G_CDS: 2.06 Total: 52.89 kcal Total: -70.42 4.13 -66.29 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001025627898.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.106 kcal (2) G-P(sol) polarization free energy of solvation -70.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds