Wall clock time and date at job start Tue Mar 31 2020 17:59:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 N 1.46502 * 109.47063 * 2 1 4 4 C 1.36454 * 124.84519 * 270.02303 * 3 2 1 5 5 C 1.50693 * 125.57529 * 359.94101 * 4 3 2 6 6 C 1.34488 * 108.85228 * 179.72697 * 4 3 2 7 7 C 1.46691 * 106.33385 * 0.37812 * 6 4 3 8 8 C 1.47260 * 126.94239 * 179.88376 * 7 6 4 9 9 O 1.21626 * 119.99530 * 132.07784 * 8 7 6 10 10 N 1.34769 * 120.00421 * 312.08801 * 8 7 6 11 11 C 1.46940 * 120.60405 * 5.76242 * 10 8 7 12 12 C 1.53189 * 108.77163 * 233.53800 * 11 10 8 13 13 C 1.53038 * 109.33919 * 305.41320 * 12 11 10 14 14 C 1.53039 * 109.53643 * 61.35428 * 13 12 11 15 15 H 1.09003 * 109.49777 * 58.61877 * 14 13 12 16 16 N 1.46501 * 109.49889 * 178.67959 * 14 13 12 17 17 C 1.46505 * 119.99973 * 59.99456 * 16 14 13 18 18 C 1.36939 * 120.00456 * 240.00058 * 16 14 13 19 19 H 1.07998 * 119.99480 * 322.29759 * 18 16 14 20 20 C 1.38807 * 120.00251 * 142.29457 * 18 16 14 21 21 N 1.31617 * 119.99930 * 157.85471 * 20 18 16 22 22 Si 1.86801 * 120.00139 * 337.85728 * 20 18 16 23 23 H 1.48504 * 109.47082 * 94.30160 * 22 20 18 24 24 H 1.48494 * 109.47299 * 214.29878 * 22 20 18 25 25 H 1.48501 * 109.47308 * 334.30304 * 22 20 18 26 26 C 1.46927 * 120.63418 * 185.74926 * 10 8 7 27 27 C 1.34654 * 124.85620 * 89.99855 * 3 2 1 28 28 C 1.50703 * 125.80168 * 0.02562 * 27 3 2 29 29 H 1.09003 * 109.47501 * 60.00626 * 1 2 3 30 30 H 1.09009 * 109.47271 * 180.02562 * 1 2 3 31 31 H 1.09001 * 109.47395 * 300.00159 * 1 2 3 32 32 H 1.08999 * 109.47453 * 239.99293 * 2 1 3 33 33 H 1.09003 * 109.47501 * 119.99374 * 2 1 3 34 34 H 1.09003 * 109.47249 * 89.99772 * 5 4 3 35 35 H 1.08998 * 109.47516 * 210.00430 * 5 4 3 36 36 H 1.09008 * 109.47068 * 330.00169 * 5 4 3 37 37 H 1.07997 * 126.83327 * 180.25032 * 6 4 3 38 38 H 1.09007 * 109.55964 * 113.76890 * 11 10 8 39 39 H 1.08994 * 109.61264 * 353.34397 * 11 10 8 40 40 H 1.09002 * 109.49711 * 185.44946 * 12 11 10 41 41 H 1.08994 * 109.49658 * 65.38680 * 12 11 10 42 42 H 1.09002 * 109.45768 * 181.36892 * 13 12 11 43 43 H 1.08999 * 109.46600 * 301.32874 * 13 12 11 44 44 H 1.08999 * 109.46820 * 84.11214 * 17 16 14 45 45 H 1.08995 * 109.47230 * 204.11367 * 17 16 14 46 46 H 1.09002 * 109.47279 * 324.11465 * 17 16 14 47 47 H 0.97006 * 120.00018 * 179.97438 * 21 20 18 48 48 H 1.08998 * 109.58438 * 6.63961 * 26 10 8 49 49 H 1.09005 * 109.58426 * 246.21849 * 26 10 8 50 50 H 1.09002 * 109.46929 * 270.00406 * 28 27 3 51 51 H 1.09007 * 109.46854 * 29.99711 * 28 27 3 52 52 H 1.08994 * 109.47252 * 149.99571 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.2777 2.1164 -1.1199 5 6 2.1100 1.6401 -2.5397 6 6 2.7030 3.3373 -0.7493 7 6 2.7115 3.3436 0.7175 8 6 3.1047 4.4585 1.5955 9 8 2.3923 4.7786 2.5279 10 7 4.2538 5.1242 1.3659 11 6 5.0610 4.8338 0.1729 12 6 6.4948 4.5205 0.6121 13 6 7.0266 5.6737 1.4662 14 6 6.1600 5.8250 2.7185 15 1 6.1718 4.8931 3.2839 16 7 6.6886 6.9085 3.5509 17 6 6.7751 8.2690 3.0142 18 6 7.1019 6.6498 4.8305 19 1 6.5581 5.9444 5.4413 20 6 8.2197 7.2940 5.3425 21 7 8.3769 7.4043 6.6446 22 14 9.5009 8.0046 4.1836 23 1 9.2060 9.4394 3.9395 24 1 10.8480 7.8731 4.7943 25 1 9.4670 7.2663 2.8956 26 6 4.7227 6.1539 2.3032 27 6 2.2747 2.1068 1.1050 28 6 2.1088 1.6360 2.5269 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5137 0.8900 34 1 1.1004 1.8669 -2.8822 35 1 2.8331 2.1451 -3.1802 36 1 2.2753 0.5635 -2.5836 37 1 2.9846 4.1505 -1.4019 38 1 5.0623 5.7014 -0.4870 39 1 4.6432 3.9742 -0.3511 40 1 7.1263 4.3982 -0.2678 41 1 6.5033 3.6007 1.1968 42 1 8.0552 5.4639 1.7596 43 1 6.9951 6.5977 0.8890 44 1 5.8136 8.7685 3.1336 45 1 7.5424 8.8242 3.5536 46 1 7.0335 8.2265 1.9562 47 1 9.1583 7.8542 7.0024 48 1 4.0812 6.1652 3.1844 49 1 4.6967 7.1293 1.8173 50 1 1.0998 1.8647 2.8699 51 1 2.2736 0.5596 2.5748 52 1 2.8330 2.1432 3.1644 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027480940.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:59:20 Heat of formation + Delta-G solvation = 14.694315 kcal Electronic energy + Delta-G solvation = -30088.019438 eV Core-core repulsion = 26281.180565 eV Total energy + Delta-G solvation = -3806.838873 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.51926 -40.83011 -38.85637 -36.82613 -35.04440 -34.02752 -33.64356 -33.05940 -31.34082 -30.17092 -29.86811 -28.06997 -26.98741 -25.61968 -25.16011 -24.33088 -23.11255 -22.34720 -20.98718 -20.29133 -19.07951 -18.80435 -18.07499 -17.39794 -17.02677 -16.72991 -16.44050 -15.98983 -15.64683 -15.43601 -15.27637 -15.22863 -14.78026 -14.50369 -14.29250 -14.15634 -14.11189 -14.09809 -13.92373 -13.72882 -13.68260 -13.61357 -13.47384 -13.08717 -12.95122 -12.85673 -12.61279 -12.50645 -12.27392 -12.15497 -12.08049 -12.06595 -11.87138 -11.74514 -11.67216 -11.35134 -10.93580 -10.67288 -9.71615 -9.39880 -8.88972 -8.75293 -8.22643 -5.62923 0.91773 1.31063 1.41179 1.48223 1.54531 1.77634 2.09067 2.36048 2.41317 3.03444 3.33161 3.70635 3.78520 3.84660 3.94148 3.99469 4.11181 4.13640 4.14846 4.20666 4.30148 4.35435 4.39388 4.51819 4.52554 4.60414 4.61715 4.63965 4.71130 4.78241 4.79398 4.82939 4.87445 4.87746 4.93491 4.98522 4.99051 5.03951 5.05384 5.13126 5.16964 5.26443 5.29083 5.40212 5.46687 5.57678 5.86785 5.89908 6.13410 6.19420 6.42671 6.55865 6.93989 7.26878 7.58195 7.99537 8.97462 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.022158 B = 0.002867 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1263.335110 B = 9764.853797 C =10294.181825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.086 3.914 3 N -0.432 5.432 4 C 0.024 3.976 5 C -0.080 4.080 6 C -0.185 4.185 7 C -0.251 4.251 8 C 0.584 3.416 9 O -0.599 6.599 10 N -0.601 5.601 11 C 0.101 3.899 12 C -0.121 4.121 13 C -0.128 4.128 14 C 0.169 3.831 15 H 0.040 0.960 16 N -0.615 5.615 17 C 0.105 3.895 18 C -0.266 4.266 19 H 0.029 0.971 20 C -0.023 4.023 21 N -0.952 5.952 22 Si 0.957 3.043 23 H -0.272 1.272 24 H -0.308 1.308 25 H -0.249 1.249 26 C 0.116 3.884 27 C 0.079 3.921 28 C -0.084 4.084 29 H 0.060 0.940 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.117 0.883 33 H 0.099 0.901 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.085 0.915 39 H 0.116 0.884 40 H 0.105 0.895 41 H 0.052 0.948 42 H 0.050 0.950 43 H 0.072 0.928 44 H 0.022 0.978 45 H 0.034 0.966 46 H 0.065 0.935 47 H 0.265 0.735 48 H 0.049 0.951 49 H 0.071 0.929 50 H 0.075 0.925 51 H 0.094 0.906 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 -17.327 -25.983 33.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.034 4.034 3 N -0.108 5.108 4 C -0.085 4.085 5 C -0.137 4.137 6 C -0.208 4.208 7 C -0.261 4.261 8 C 0.375 3.625 9 O -0.482 6.482 10 N -0.332 5.332 11 C -0.020 4.020 12 C -0.160 4.160 13 C -0.168 4.168 14 C 0.062 3.938 15 H 0.059 0.941 16 N -0.339 5.339 17 C -0.039 4.039 18 C -0.395 4.395 19 H 0.047 0.953 20 C -0.220 4.220 21 N -0.596 5.596 22 Si 0.784 3.216 23 H -0.198 1.198 24 H -0.237 1.237 25 H -0.173 1.173 26 C -0.009 4.009 27 C -0.038 4.038 28 C -0.141 4.141 29 H 0.079 0.921 30 H 0.116 0.884 31 H 0.064 0.936 32 H 0.135 0.865 33 H 0.117 0.883 34 H 0.098 0.902 35 H 0.112 0.888 36 H 0.100 0.900 37 H 0.176 0.824 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.124 0.876 41 H 0.071 0.929 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.040 0.960 45 H 0.052 0.948 46 H 0.083 0.917 47 H 0.073 0.927 48 H 0.068 0.932 49 H 0.089 0.911 50 H 0.094 0.906 51 H 0.112 0.888 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.893 -17.444 -25.414 33.413 hybrid contribution 0.697 0.909 1.040 1.546 sum -12.197 -16.536 -24.375 31.880 Atomic orbital electron populations 1.22128 0.93695 1.04138 1.02338 1.22204 0.96067 0.78922 1.06177 1.43803 1.50050 1.12852 1.04105 1.20742 1.05849 0.91812 0.90062 1.20446 1.03781 1.02368 0.87078 1.21869 1.09618 0.98189 0.91122 1.19984 1.16803 0.94555 0.94722 1.18079 0.80025 0.81378 0.83048 1.90723 1.53789 1.68938 1.34716 1.48067 1.22213 1.38009 1.24921 1.22249 0.90370 1.03450 0.85914 1.21865 0.96239 0.97356 1.00496 1.21989 0.98983 0.99630 0.96153 1.20758 0.91235 0.90273 0.91541 0.94120 1.44095 1.74332 1.03774 1.11715 1.21436 0.98943 0.85577 0.97907 1.18610 1.07163 1.25410 0.88346 0.95348 1.26181 0.99263 0.99705 0.96811 1.70024 1.29972 1.46156 1.13401 0.85683 0.77387 0.78433 0.80115 1.19839 1.23675 1.17275 1.21845 0.95777 0.90775 0.92525 1.20144 1.02127 0.91469 0.90055 1.20347 1.02785 1.02140 0.88841 0.92066 0.88388 0.93552 0.86481 0.88262 0.90226 0.88784 0.90041 0.82438 0.89716 0.86659 0.87622 0.92874 0.93114 0.90918 0.95989 0.94765 0.91655 0.92654 0.93195 0.91058 0.90630 0.88766 0.92741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.32 10.24 71.98 0.74 -0.58 16 2 C 0.09 0.75 6.30 86.38 0.54 1.30 16 3 N -0.43 -7.36 2.69 -495.50 -1.33 -8.69 16 4 C 0.02 0.39 6.85 40.98 0.28 0.67 16 5 C -0.08 -0.58 10.06 71.23 0.72 0.14 16 6 C -0.18 -3.88 8.58 23.62 0.20 -3.68 16 7 C -0.25 -7.24 5.33 -19.04 -0.10 -7.34 16 8 C 0.58 21.56 7.20 86.62 0.62 22.18 16 9 O -0.60 -27.53 16.35 -4.11 -0.07 -27.59 16 10 N -0.60 -20.18 2.97 -822.95 -2.45 -22.62 16 11 C 0.10 2.41 5.95 86.36 0.51 2.93 16 12 C -0.12 -2.99 6.08 30.67 0.19 -2.81 16 13 C -0.13 -4.23 5.10 30.62 0.16 -4.07 16 14 C 0.17 7.13 2.75 45.07 0.12 7.25 16 15 H 0.04 1.94 7.89 -2.39 -0.02 1.92 16 16 N -0.61 -30.55 2.37 -702.35 -1.66 -32.21 16 17 C 0.11 4.56 8.31 127.77 1.06 5.63 16 18 C -0.27 -16.04 9.83 84.03 0.83 -15.21 16 19 H 0.03 1.95 8.06 -2.91 -0.02 1.93 16 20 C -0.02 -1.41 5.27 84.86 0.45 -0.97 16 21 N -0.95 -61.76 13.97 21.65 0.30 -61.46 16 22 Si 0.96 46.92 25.08 68.60 1.72 48.64 16 23 H -0.27 -12.58 6.63 99.48 0.66 -11.92 16 24 H -0.31 -15.27 7.11 99.48 0.71 -14.57 16 25 H -0.25 -11.36 7.11 99.48 0.71 -10.65 16 26 C 0.12 4.57 5.77 86.36 0.50 5.07 16 27 C 0.08 1.94 6.89 41.78 0.29 2.23 16 28 C -0.08 -1.96 9.70 71.24 0.69 -1.27 16 29 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 30 H 0.10 0.34 8.14 -2.38 -0.02 0.32 16 31 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 0.44 6.90 -2.39 -0.02 0.43 16 33 H 0.10 0.72 6.88 -2.39 -0.02 0.71 16 34 H 0.08 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.09 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.08 0.31 6.95 -2.38 -0.02 0.30 16 37 H 0.16 2.72 7.56 -2.91 -0.02 2.70 16 38 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 39 H 0.12 2.39 4.31 -2.39 -0.01 2.38 16 40 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 41 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 43 H 0.07 2.17 6.76 -2.39 -0.02 2.15 16 44 H 0.02 0.92 8.13 -2.39 -0.02 0.90 16 45 H 0.03 1.59 3.55 -2.39 -0.01 1.58 16 46 H 0.07 2.34 6.49 -2.39 -0.02 2.33 16 47 H 0.26 16.11 8.31 -92.70 -0.77 15.34 16 48 H 0.05 2.37 7.04 -2.39 -0.02 2.35 16 49 H 0.07 2.62 7.50 -2.38 -0.02 2.60 16 50 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 51 H 0.09 1.51 6.92 -2.38 -0.02 1.49 16 52 H 0.05 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -83.22 397.06 5.16 -78.05 By element: Atomic # 1 Polarization: 13.55 SS G_CDS: 0.85 Total: 14.40 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: 7.79 Total: 11.48 kcal Atomic # 7 Polarization: -119.85 SS G_CDS: -5.14 Total: -124.99 kcal Atomic # 8 Polarization: -27.53 SS G_CDS: -0.07 Total: -27.59 kcal Atomic # 14 Polarization: 46.92 SS G_CDS: 1.72 Total: 48.64 kcal Total: -83.22 5.16 -78.05 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027480940.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.748 kcal (2) G-P(sol) polarization free energy of solvation -83.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.054 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds