Wall clock time and date at job start Tue Mar 31 2020 18:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46981 * 2 1 4 4 C 1.34776 * 119.99695 * 272.43564 * 3 2 1 5 5 O 1.21625 * 119.99965 * 185.28952 * 4 3 2 6 6 C 1.47259 * 120.00171 * 5.29433 * 4 3 2 7 7 C 1.46688 * 126.94308 * 7.23541 * 6 4 3 8 8 C 1.34486 * 106.33213 * 179.83145 * 7 6 4 9 9 C 1.50702 * 125.56985 * 180.14371 * 8 7 6 10 10 N 1.36444 * 108.85948 * 0.43382 * 8 7 6 11 11 C 1.46498 * 124.85713 * 179.73093 * 10 8 7 12 12 C 1.53002 * 109.47415 * 269.98010 * 11 10 8 13 13 C 1.34663 * 110.29499 * 359.71317 * 10 8 7 14 14 C 1.50695 * 125.80059 * 180.02562 * 13 10 8 15 15 C 1.46498 * 120.00151 * 92.43989 * 3 2 1 16 16 H 1.09004 * 110.91256 * 347.82598 * 15 3 2 17 17 C 1.55157 * 111.00316 * 111.72255 * 15 3 2 18 18 C 1.54327 * 102.93903 * 82.57399 * 17 15 3 19 19 N 1.47017 * 107.27241 * 22.19261 * 18 17 15 20 20 C 1.36936 * 125.64963 * 180.79308 * 19 18 17 21 21 H 1.08000 * 120.00120 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00007 * 0.02562 * 20 19 18 23 23 N 1.31614 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47148 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47028 * 120.00125 * 24 22 20 27 27 H 1.48506 * 109.47235 * 239.99848 * 24 22 20 28 28 C 1.47427 * 108.70552 * 1.05749 * 19 18 17 29 29 H 1.08998 * 109.47043 * 300.00049 * 1 2 3 30 30 H 1.09002 * 109.47089 * 60.00387 * 1 2 3 31 31 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47043 * 239.99951 * 2 1 3 33 33 H 1.09002 * 109.47089 * 119.99613 * 2 1 3 34 34 H 1.08005 * 126.83320 * 359.97438 * 7 6 4 35 35 H 1.08991 * 109.47194 * 270.33279 * 9 8 7 36 36 H 1.08999 * 109.47211 * 30.34235 * 9 8 7 37 37 H 1.09007 * 109.46787 * 150.33340 * 9 8 7 38 38 H 1.09009 * 109.46612 * 29.97520 * 11 10 8 39 39 H 1.08998 * 109.47209 * 149.97327 * 11 10 8 40 40 H 1.09000 * 109.46762 * 59.99612 * 12 11 10 41 41 H 1.08995 * 109.47270 * 179.97438 * 12 11 10 42 42 H 1.09004 * 109.46724 * 299.99859 * 12 11 10 43 43 H 1.08997 * 109.47418 * 269.99908 * 14 13 10 44 44 H 1.09007 * 109.47490 * 30.00031 * 14 13 10 45 45 H 1.09009 * 109.47368 * 149.99634 * 14 13 10 46 46 H 1.08994 * 110.72657 * 324.21218 * 17 15 3 47 47 H 1.08998 * 110.86888 * 201.00431 * 17 15 3 48 48 H 1.09002 * 109.88351 * 262.77177 * 18 17 15 49 49 H 1.09001 * 109.88265 * 141.60801 * 18 17 15 50 50 H 0.97001 * 120.00032 * 180.02562 * 23 22 20 51 51 H 1.09001 * 110.36825 * 94.71021 * 28 19 18 52 52 H 1.08993 * 110.36833 * 217.03525 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1962 2.0331 -1.1662 5 8 2.6916 3.1438 -1.1726 6 6 1.7905 1.4005 -2.4326 7 6 1.0511 0.1438 -2.5932 8 6 0.9015 -0.0405 -3.9169 9 6 0.1975 -1.2042 -4.5660 10 7 1.4970 0.9950 -4.5764 11 6 1.5468 1.1418 -6.0332 12 6 2.8057 0.4594 -6.5719 13 6 2.0321 1.8630 -3.6969 14 6 2.7710 3.1290 -4.0462 15 6 2.3134 2.0539 1.2675 16 1 1.9222 1.4843 2.1106 17 6 3.8370 2.3026 1.4236 18 6 4.0598 3.5993 0.6170 19 7 2.7647 4.2903 0.5349 20 6 2.5314 5.4743 -0.1123 21 1 1.5399 5.9024 -0.1144 22 6 3.5694 6.1243 -0.7658 23 7 4.7776 5.6024 -0.7637 24 14 3.2511 7.7391 -1.6493 25 1 1.8202 8.1090 -1.5042 26 1 4.0997 8.8036 -1.0561 27 1 3.5804 7.5886 -3.0896 28 6 1.7601 3.5007 1.2703 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6954 -0.5034 -1.8051 35 1 0.9122 -2.0074 -4.7447 36 1 -0.5947 -1.5622 -3.9085 37 1 -0.2344 -0.8844 -5.5144 38 1 0.6648 0.6783 -6.4754 39 1 1.5687 2.2006 -6.2911 40 1 2.7837 -0.5994 -6.3140 41 1 2.8425 0.5683 -7.6558 42 1 3.6877 0.9228 -6.1297 43 1 3.8338 2.9118 -4.1529 44 1 2.3856 3.5276 -4.9847 45 1 2.6282 3.8636 -3.2536 46 1 4.4081 1.4791 0.9952 47 1 4.1011 2.4497 2.4708 48 1 4.4146 3.3565 -0.3846 49 1 4.7861 4.2326 1.1264 50 1 5.5031 6.0568 -1.2200 51 1 1.6628 3.8677 2.2920 52 1 0.7983 3.5400 0.7590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033889062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:01 Heat of formation + Delta-G solvation = 108.130784 kcal Electronic energy + Delta-G solvation = -31883.265079 eV Core-core repulsion = 28080.477915 eV Total energy + Delta-G solvation = -3802.787164 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.25815 -39.24692 -35.87772 -35.31082 -33.79661 -32.31180 -32.08069 -29.97077 -29.06819 -28.85107 -28.56972 -26.89108 -24.68058 -24.01952 -23.61068 -22.72756 -21.44075 -20.39859 -19.66332 -18.63948 -17.29812 -16.62228 -16.16462 -15.91928 -15.30753 -15.18237 -14.53308 -14.31905 -14.20059 -14.01497 -13.56104 -13.47290 -13.19414 -13.03855 -12.83594 -12.76522 -12.51655 -12.28136 -12.03006 -11.91478 -11.70456 -11.65557 -11.56148 -11.50563 -11.34686 -11.28681 -11.12072 -10.92312 -10.78392 -10.63380 -10.58916 -10.43847 -9.82437 -9.76239 -9.48755 -9.27430 -8.36619 -8.16924 -8.04412 -7.52997 -7.50419 -6.06069 -5.27710 -2.51266 2.39006 2.76000 3.02371 3.58501 3.64386 3.66005 3.88149 4.53689 4.57447 4.80607 4.82542 4.88615 5.01026 5.15416 5.24808 5.31277 5.40020 5.43834 5.48564 5.50642 5.53083 5.67409 5.68709 5.73729 5.82649 5.85204 5.88836 5.89878 5.93613 5.98326 6.08099 6.16452 6.21271 6.25758 6.29748 6.43683 6.48964 6.55941 6.74595 6.80663 6.85095 6.89956 6.99114 7.24808 7.48098 7.62985 7.66291 7.92281 8.09485 8.32069 8.49747 8.71333 9.63005 9.65907 10.27689 10.95446 11.85282 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005501 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.248721 B = 5088.964092 C = 6939.193136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.101 3.899 3 N -0.609 5.609 4 C 0.530 3.470 5 O -0.411 6.411 6 C -0.211 4.211 7 C -0.194 4.194 8 C -0.007 4.007 9 C -0.078 4.078 10 N -0.442 5.442 11 C 0.096 3.904 12 C -0.167 4.167 13 C 0.098 3.902 14 C -0.093 4.093 15 C 0.137 3.863 16 H 0.076 0.924 17 C -0.161 4.161 18 C 0.196 3.804 19 N -0.564 5.564 20 C -0.183 4.183 21 H 0.064 0.936 22 C -0.007 4.007 23 N -0.918 5.918 24 Si 0.892 3.108 25 H -0.286 1.286 26 H -0.298 1.298 27 H -0.297 1.297 28 C 0.131 3.869 29 H 0.055 0.945 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.088 0.912 33 H 0.062 0.938 34 H 0.164 0.836 35 H 0.065 0.935 36 H 0.075 0.925 37 H 0.057 0.943 38 H 0.085 0.915 39 H 0.088 0.912 40 H 0.060 0.940 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.049 0.951 45 H 0.116 0.884 46 H 0.054 0.946 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.025 0.975 50 H 0.241 0.759 51 H 0.018 0.982 52 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.892 -17.278 -7.174 20.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.023 4.023 3 N -0.346 5.346 4 C 0.316 3.684 5 O -0.278 6.278 6 C -0.221 4.221 7 C -0.218 4.218 8 C -0.114 4.114 9 C -0.135 4.135 10 N -0.121 5.121 11 C -0.026 4.026 12 C -0.225 4.225 13 C -0.016 4.016 14 C -0.150 4.150 15 C 0.032 3.968 16 H 0.094 0.906 17 C -0.200 4.200 18 C 0.071 3.929 19 N -0.289 5.289 20 C -0.313 4.313 21 H 0.082 0.918 22 C -0.202 4.202 23 N -0.568 5.568 24 Si 0.725 3.275 25 H -0.212 1.212 26 H -0.225 1.225 27 H -0.224 1.224 28 C 0.003 3.997 29 H 0.074 0.926 30 H 0.089 0.911 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.080 0.920 34 H 0.181 0.819 35 H 0.083 0.917 36 H 0.094 0.906 37 H 0.076 0.924 38 H 0.103 0.897 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.068 0.932 45 H 0.135 0.865 46 H 0.073 0.927 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.043 0.957 50 H 0.052 0.948 51 H 0.036 0.964 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.487 -16.432 -7.680 19.622 hybrid contribution -0.305 0.601 -0.643 0.931 sum -7.792 -15.831 -8.323 19.509 Atomic orbital electron populations 1.22471 0.97168 1.01131 1.03090 1.21821 0.93560 0.84409 1.02506 1.47546 1.68774 1.12899 1.05400 1.17667 0.81801 0.86655 0.82271 1.91524 1.36390 1.15318 1.84613 1.20506 1.10213 0.98542 0.92804 1.22848 1.05639 0.98862 0.94427 1.20169 1.05793 0.93243 0.92239 1.20238 0.99230 0.94076 0.99978 1.43577 1.44100 1.18843 1.05542 1.21762 0.99599 1.02728 0.78547 1.22136 0.97837 1.01334 1.01226 1.20317 0.99522 0.93649 0.88150 1.20593 0.98332 0.93182 1.02915 1.22174 0.95910 0.94103 0.84574 0.90602 1.23368 0.95193 1.01269 1.00179 1.21087 0.87592 0.86901 0.97272 1.44110 1.03975 1.22038 1.58776 1.18816 0.94109 0.94197 1.24155 0.91780 1.24493 0.95919 0.98165 1.01580 1.69973 0.99682 1.38541 1.48648 0.86306 0.76748 0.84767 0.79663 1.21157 1.22544 1.22439 1.21744 0.93673 0.89251 0.95027 0.92628 0.91080 0.92544 0.89392 0.91957 0.81890 0.91664 0.90593 0.92379 0.89676 0.89339 0.92051 0.91066 0.91634 0.91197 0.93179 0.86523 0.92675 0.92523 0.91854 0.95731 0.94840 0.96444 0.94928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.14 8.64 37.16 0.32 -1.82 16 2 C 0.10 1.36 5.56 -4.04 -0.02 1.34 16 3 N -0.61 -10.97 2.56 -164.99 -0.42 -11.39 16 4 C 0.53 11.19 7.12 -12.59 -0.09 11.10 16 5 O -0.41 -10.41 6.71 5.26 0.04 -10.37 16 6 C -0.21 -3.90 6.04 -103.35 -0.62 -4.53 16 7 C -0.19 -2.84 7.26 -37.50 -0.27 -3.11 16 8 C -0.01 -0.09 6.85 -81.87 -0.56 -0.65 16 9 C -0.08 -0.69 10.06 36.01 0.36 -0.32 16 10 N -0.44 -6.15 2.69 -107.96 -0.29 -6.44 16 11 C 0.10 0.97 6.30 -4.04 -0.03 0.94 16 12 C -0.17 -1.50 10.24 37.16 0.38 -1.12 16 13 C 0.10 1.72 6.89 -81.88 -0.56 1.16 16 14 C -0.09 -1.71 9.60 36.00 0.35 -1.36 16 15 C 0.14 2.57 3.76 -65.78 -0.25 2.33 16 16 H 0.08 1.19 7.98 -51.93 -0.41 0.77 16 17 C -0.16 -3.28 6.55 -24.89 -0.16 -3.45 16 18 C 0.20 5.12 4.21 -3.06 -0.01 5.10 16 19 N -0.56 -15.14 1.74 -170.07 -0.30 -15.44 16 20 C -0.18 -5.40 8.90 -15.06 -0.13 -5.54 16 21 H 0.06 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.01 -0.20 5.48 -17.43 -0.10 -0.30 16 23 N -0.92 -28.34 10.31 55.49 0.57 -27.77 16 24 Si 0.89 23.49 29.55 -169.99 -5.02 18.47 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 27 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 28 C 0.13 2.93 6.23 -2.53 -0.02 2.91 16 29 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.97 6.08 -51.93 -0.32 0.65 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.18 4.89 -51.93 -0.25 0.92 16 33 H 0.06 0.74 8.01 -51.93 -0.42 0.32 16 34 H 0.16 2.04 3.50 -52.48 -0.18 1.85 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 0.45 6.94 -51.93 -0.36 0.09 16 38 H 0.08 0.69 6.90 -51.92 -0.36 0.33 16 39 H 0.09 0.88 6.88 -51.93 -0.36 0.53 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 44 H 0.05 0.77 6.92 -51.93 -0.36 0.41 16 45 H 0.12 2.69 6.34 -51.92 -0.33 2.36 16 46 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 47 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 48 H 0.06 1.87 5.62 -51.93 -0.29 1.58 16 49 H 0.02 0.72 7.49 -51.93 -0.39 0.33 16 50 H 0.24 7.31 8.31 -40.82 -0.34 6.97 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.03 0.76 8.13 -51.93 -0.42 0.34 16 LS Contribution 385.95 15.07 5.82 5.82 Total: -1.00 -34.57 385.95 -9.67 -44.25 By element: Atomic # 1 Polarization: 8.84 SS G_CDS: -8.65 Total: 0.19 kcal Atomic # 6 Polarization: 4.10 SS G_CDS: -1.42 Total: 2.68 kcal Atomic # 7 Polarization: -60.60 SS G_CDS: -0.44 Total: -61.03 kcal Atomic # 8 Polarization: -10.41 SS G_CDS: 0.04 Total: -10.37 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.47 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.57 -9.67 -44.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033889062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.376 kcal (2) G-P(sol) polarization free energy of solvation -34.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.805 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds