Wall clock time and date at job start Tue Mar 31 2020 18:03:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.46981 * 2 1 4 4 C 1.34776 * 119.99695 * 272.43564 * 3 2 1 5 5 O 1.21625 * 119.99965 * 185.28952 * 4 3 2 6 6 C 1.47259 * 120.00171 * 5.29433 * 4 3 2 7 7 C 1.46688 * 126.94308 * 7.23541 * 6 4 3 8 8 C 1.34486 * 106.33213 * 179.83145 * 7 6 4 9 9 C 1.50702 * 125.56985 * 180.14371 * 8 7 6 10 10 N 1.36444 * 108.85948 * 0.43382 * 8 7 6 11 11 C 1.46498 * 124.85713 * 179.73093 * 10 8 7 12 12 C 1.53002 * 109.47415 * 269.98010 * 11 10 8 13 13 C 1.34663 * 110.29499 * 359.71317 * 10 8 7 14 14 C 1.50695 * 125.80059 * 180.02562 * 13 10 8 15 15 C 1.46498 * 120.00151 * 92.43989 * 3 2 1 16 16 H 1.09004 * 110.91256 * 347.82598 * 15 3 2 17 17 C 1.55157 * 111.00316 * 111.72255 * 15 3 2 18 18 C 1.54327 * 102.93903 * 82.57399 * 17 15 3 19 19 N 1.47017 * 107.27241 * 22.19261 * 18 17 15 20 20 C 1.36936 * 125.64963 * 180.79308 * 19 18 17 21 21 H 1.08000 * 120.00120 * 180.02562 * 20 19 18 22 22 C 1.38813 * 120.00007 * 0.02562 * 20 19 18 23 23 N 1.31614 * 119.99885 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00013 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47148 * 0.02562 * 24 22 20 26 26 H 1.48509 * 109.47028 * 120.00125 * 24 22 20 27 27 H 1.48506 * 109.47235 * 239.99848 * 24 22 20 28 28 C 1.47427 * 108.70552 * 1.05749 * 19 18 17 29 29 H 1.08998 * 109.47043 * 300.00049 * 1 2 3 30 30 H 1.09002 * 109.47089 * 60.00387 * 1 2 3 31 31 H 1.08996 * 109.47108 * 180.02562 * 1 2 3 32 32 H 1.08998 * 109.47043 * 239.99951 * 2 1 3 33 33 H 1.09002 * 109.47089 * 119.99613 * 2 1 3 34 34 H 1.08005 * 126.83320 * 359.97438 * 7 6 4 35 35 H 1.08991 * 109.47194 * 270.33279 * 9 8 7 36 36 H 1.08999 * 109.47211 * 30.34235 * 9 8 7 37 37 H 1.09007 * 109.46787 * 150.33340 * 9 8 7 38 38 H 1.09009 * 109.46612 * 29.97520 * 11 10 8 39 39 H 1.08998 * 109.47209 * 149.97327 * 11 10 8 40 40 H 1.09000 * 109.46762 * 59.99612 * 12 11 10 41 41 H 1.08995 * 109.47270 * 179.97438 * 12 11 10 42 42 H 1.09004 * 109.46724 * 299.99859 * 12 11 10 43 43 H 1.08997 * 109.47418 * 269.99908 * 14 13 10 44 44 H 1.09007 * 109.47490 * 30.00031 * 14 13 10 45 45 H 1.09009 * 109.47368 * 149.99634 * 14 13 10 46 46 H 1.08994 * 110.72657 * 324.21218 * 17 15 3 47 47 H 1.08998 * 110.86888 * 201.00431 * 17 15 3 48 48 H 1.09002 * 109.88351 * 262.77177 * 18 17 15 49 49 H 1.09001 * 109.88265 * 141.60801 * 18 17 15 50 50 H 0.97001 * 120.00032 * 180.02562 * 23 22 20 51 51 H 1.09001 * 110.36825 * 94.71021 * 28 19 18 52 52 H 1.08993 * 110.36833 * 217.03525 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1962 2.0331 -1.1662 5 8 2.6916 3.1438 -1.1726 6 6 1.7905 1.4005 -2.4326 7 6 1.0511 0.1438 -2.5932 8 6 0.9015 -0.0405 -3.9169 9 6 0.1975 -1.2042 -4.5660 10 7 1.4970 0.9950 -4.5764 11 6 1.5468 1.1418 -6.0332 12 6 2.8057 0.4594 -6.5719 13 6 2.0321 1.8630 -3.6969 14 6 2.7710 3.1290 -4.0462 15 6 2.3134 2.0539 1.2675 16 1 1.9222 1.4843 2.1106 17 6 3.8370 2.3026 1.4236 18 6 4.0598 3.5993 0.6170 19 7 2.7647 4.2903 0.5349 20 6 2.5314 5.4743 -0.1123 21 1 1.5399 5.9024 -0.1144 22 6 3.5694 6.1243 -0.7658 23 7 4.7776 5.6024 -0.7637 24 14 3.2511 7.7391 -1.6493 25 1 1.8202 8.1090 -1.5042 26 1 4.0997 8.8036 -1.0561 27 1 3.5804 7.5886 -3.0896 28 6 1.7601 3.5007 1.2703 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.8934 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 0.6954 -0.5034 -1.8051 35 1 0.9122 -2.0074 -4.7447 36 1 -0.5947 -1.5622 -3.9085 37 1 -0.2344 -0.8844 -5.5144 38 1 0.6648 0.6783 -6.4754 39 1 1.5687 2.2006 -6.2911 40 1 2.7837 -0.5994 -6.3140 41 1 2.8425 0.5683 -7.6558 42 1 3.6877 0.9228 -6.1297 43 1 3.8338 2.9118 -4.1529 44 1 2.3856 3.5276 -4.9847 45 1 2.6282 3.8636 -3.2536 46 1 4.4081 1.4791 0.9952 47 1 4.1011 2.4497 2.4708 48 1 4.4146 3.3565 -0.3846 49 1 4.7861 4.2326 1.1264 50 1 5.5031 6.0568 -1.2200 51 1 1.6628 3.8677 2.2920 52 1 0.7983 3.5400 0.7590 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033889062.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:03:00 Heat of formation + Delta-G solvation = 88.357854 kcal Electronic energy + Delta-G solvation = -31884.122497 eV Core-core repulsion = 28080.477915 eV Total energy + Delta-G solvation = -3803.644582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41676 -40.79163 -37.61433 -36.72179 -34.90255 -33.97116 -33.43814 -31.54788 -30.45504 -30.11200 -29.91480 -28.64748 -26.38311 -25.58207 -24.68170 -23.81283 -22.76298 -21.79406 -21.58203 -19.93073 -18.81919 -18.38085 -17.63048 -17.18156 -16.69715 -16.40304 -16.30663 -15.83217 -15.62871 -15.55768 -15.13926 -14.78640 -14.21611 -14.09149 -14.01120 -13.73939 -13.62769 -13.61066 -13.48367 -13.37494 -13.18979 -13.10996 -13.09639 -12.82211 -12.71198 -12.56906 -12.44940 -12.35900 -12.12419 -12.09448 -12.04943 -11.96464 -11.91088 -11.58206 -11.40586 -11.27831 -10.48981 -9.84687 -9.24566 -9.16949 -8.72285 -8.16346 -7.56175 -4.78690 1.07188 1.42267 1.43511 1.52329 1.64671 1.97903 2.54503 2.63058 3.05169 3.60825 3.78950 3.85795 3.90549 4.02393 4.07076 4.10270 4.16984 4.21559 4.28681 4.40614 4.41432 4.49646 4.56083 4.60497 4.65744 4.67994 4.74108 4.79787 4.80958 4.85486 4.89645 4.92628 4.99119 5.08958 5.09615 5.12847 5.13778 5.19470 5.21513 5.25054 5.25867 5.48471 5.58251 5.59179 5.92088 6.04119 6.14154 6.23651 6.32974 6.49607 6.55943 7.05180 7.39526 8.10164 8.11415 8.75706 9.55696 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.005501 C = 0.004034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.248721 B = 5088.964092 C = 6939.193136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.096 3.904 3 N -0.608 5.608 4 C 0.518 3.482 5 O -0.469 6.469 6 C -0.242 4.242 7 C -0.202 4.202 8 C 0.007 3.993 9 C -0.076 4.076 10 N -0.436 5.436 11 C 0.086 3.914 12 C -0.161 4.161 13 C 0.071 3.929 14 C -0.077 4.077 15 C 0.150 3.850 16 H 0.126 0.874 17 C -0.146 4.146 18 C 0.210 3.790 19 N -0.576 5.576 20 C -0.186 4.186 21 H 0.056 0.944 22 C -0.059 4.059 23 N -0.944 5.944 24 Si 0.951 3.049 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.299 1.299 28 C 0.126 3.874 29 H 0.051 0.949 30 H 0.050 0.950 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.186 0.814 35 H 0.082 0.918 36 H 0.093 0.907 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.039 0.961 43 H 0.056 0.944 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.079 0.921 48 H 0.022 0.978 49 H -0.021 1.021 50 H 0.232 0.768 51 H 0.031 0.969 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.451 -21.042 -7.749 24.739 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.026 4.026 3 N -0.344 5.344 4 C 0.306 3.694 5 O -0.340 6.340 6 C -0.252 4.252 7 C -0.225 4.225 8 C -0.102 4.102 9 C -0.133 4.133 10 N -0.114 5.114 11 C -0.034 4.034 12 C -0.219 4.219 13 C -0.045 4.045 14 C -0.135 4.135 15 C 0.045 3.955 16 H 0.144 0.856 17 C -0.186 4.186 18 C 0.085 3.915 19 N -0.301 5.301 20 C -0.317 4.317 21 H 0.074 0.926 22 C -0.251 4.251 23 N -0.596 5.596 24 Si 0.783 3.217 25 H -0.201 1.201 26 H -0.225 1.225 27 H -0.227 1.227 28 C 0.000 4.000 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.112 0.888 32 H 0.109 0.891 33 H 0.108 0.892 34 H 0.203 0.797 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.093 0.907 38 H 0.135 0.865 39 H 0.104 0.896 40 H 0.085 0.915 41 H 0.116 0.884 42 H 0.058 0.942 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.040 0.960 49 H -0.003 1.003 50 H 0.041 0.959 51 H 0.048 0.952 52 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -10.100 -20.256 -8.243 24.089 hybrid contribution 0.414 1.687 -0.526 1.815 sum -9.687 -18.569 -8.770 22.705 Atomic orbital electron populations 1.22372 0.95548 1.03137 1.01901 1.22118 0.94769 0.81694 1.04015 1.47660 1.68000 1.14551 1.04205 1.18267 0.80842 0.86378 0.83932 1.91506 1.38997 1.17813 1.85716 1.20571 1.12013 1.00646 0.91955 1.23021 1.05777 0.97675 0.95992 1.20935 1.03811 0.93385 0.92040 1.20406 0.99686 0.92397 1.00790 1.43803 1.42792 1.18065 1.06723 1.22113 1.01582 1.03295 0.76403 1.22093 0.96022 1.01083 1.02667 1.20112 1.00993 0.94160 0.89192 1.20242 0.98096 0.93177 1.01964 1.22135 0.94114 0.92662 0.86592 0.85625 1.23206 0.96942 0.98106 1.00336 1.20700 0.86563 0.88685 0.95517 1.44227 1.05355 1.21810 1.58669 1.19002 0.93559 0.95221 1.23892 0.92621 1.25128 0.95874 1.01285 1.02862 1.70219 1.00198 1.39609 1.49562 0.85375 0.76918 0.81257 0.78198 1.20097 1.22481 1.22744 1.21924 0.92190 0.91404 0.94495 0.93009 0.93106 0.88819 0.89138 0.89194 0.79708 0.89986 0.88829 0.90657 0.86484 0.89629 0.91519 0.88399 0.94188 0.92508 0.90849 0.91796 0.91851 0.90248 0.95992 1.00278 0.95872 0.95165 0.96319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.44 8.64 71.98 0.62 -2.82 16 2 C 0.10 2.28 5.56 86.38 0.48 2.76 16 3 N -0.61 -21.37 2.56 -794.15 -2.03 -23.40 16 4 C 0.52 22.69 7.12 86.61 0.62 23.30 16 5 O -0.47 -25.44 6.71 -4.11 -0.03 -25.47 16 6 C -0.24 -9.11 6.04 -19.04 -0.12 -9.23 16 7 C -0.20 -5.52 7.26 23.62 0.17 -5.34 16 8 C 0.01 0.16 6.85 40.98 0.28 0.44 16 9 C -0.08 -0.96 10.06 71.24 0.72 -0.25 16 10 N -0.44 -11.55 2.69 -495.48 -1.33 -12.88 16 11 C 0.09 1.56 6.30 86.38 0.54 2.10 16 12 C -0.16 -2.55 10.24 71.98 0.74 -1.81 16 13 C 0.07 2.59 6.89 41.78 0.29 2.88 16 14 C -0.08 -3.08 9.60 71.23 0.68 -2.40 16 15 C 0.15 5.39 3.76 46.38 0.17 5.56 16 16 H 0.13 3.36 7.98 -2.38 -0.02 3.34 16 17 C -0.15 -5.94 6.55 31.78 0.21 -5.74 16 18 C 0.21 11.63 4.21 86.73 0.37 11.99 16 19 N -0.58 -32.48 1.74 -691.99 -1.21 -33.68 16 20 C -0.19 -11.60 8.90 84.03 0.75 -10.85 16 21 H 0.06 3.45 7.83 -2.91 -0.02 3.43 16 22 C -0.06 -3.74 5.48 84.86 0.47 -3.28 16 23 N -0.94 -62.41 10.31 21.65 0.22 -62.18 16 24 Si 0.95 50.97 29.55 68.60 2.03 52.99 16 25 H -0.28 -14.15 7.11 99.48 0.71 -13.45 16 26 H -0.30 -15.77 7.11 99.48 0.71 -15.06 16 27 H -0.30 -16.04 7.11 99.48 0.71 -15.33 16 28 C 0.13 5.71 6.23 86.85 0.54 6.25 16 29 H 0.05 1.09 8.14 -2.39 -0.02 1.08 16 30 H 0.05 1.25 6.08 -2.39 -0.01 1.24 16 31 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 2.16 4.89 -2.39 -0.01 2.14 16 33 H 0.09 1.69 8.01 -2.39 -0.02 1.67 16 34 H 0.19 4.01 3.50 -2.91 -0.01 4.00 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.07 0.74 6.94 -2.38 -0.02 0.73 16 38 H 0.12 1.39 6.90 -2.38 -0.02 1.38 16 39 H 0.09 1.60 6.88 -2.39 -0.02 1.58 16 40 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 41 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 42 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 43 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.07 2.42 6.92 -2.38 -0.02 2.40 16 45 H 0.06 3.26 6.34 -2.38 -0.02 3.25 16 46 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 47 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 48 H 0.02 1.41 5.62 -2.39 -0.01 1.39 16 49 H -0.02 -1.31 7.49 -2.39 -0.02 -1.32 16 50 H 0.23 15.06 8.31 -92.71 -0.77 14.28 16 51 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 52 H 0.02 0.88 8.13 -2.39 -0.02 0.86 16 Total: -1.00 -84.93 385.95 6.09 -78.84 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.91 Total: 12.21 kcal Atomic # 6 Polarization: 6.05 SS G_CDS: 7.53 Total: 13.58 kcal Atomic # 7 Polarization: -127.80 SS G_CDS: -4.35 Total: -132.15 kcal Atomic # 8 Polarization: -25.44 SS G_CDS: -0.03 Total: -25.47 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.03 Total: 52.99 kcal Total: -84.93 6.09 -78.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033889062.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.196 kcal (2) G-P(sol) polarization free energy of solvation -84.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 88.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds