Wall clock time and date at job start Tue Mar 31 2020 18:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47551 * 2 1 4 4 C 1.34776 * 120.00052 * 270.33359 * 3 2 1 5 5 O 1.21629 * 120.00229 * 185.13228 * 4 3 2 6 6 C 1.47263 * 120.00050 * 5.11873 * 4 3 2 7 7 C 1.46686 * 126.93974 * 7.59178 * 6 4 3 8 8 C 1.34492 * 106.33305 * 179.88264 * 7 6 4 9 9 N 1.36448 * 108.85148 * 0.37596 * 8 7 6 10 10 C 1.46503 * 124.84964 * 179.76941 * 9 8 7 11 11 C 1.53008 * 109.47015 * 299.97914 * 10 9 8 12 12 C 1.52997 * 109.47054 * 59.97395 * 10 9 8 13 13 C 1.34654 * 110.30056 * 359.74710 * 9 8 7 14 14 C 1.50706 * 125.80042 * 180.02562 * 13 9 8 15 15 C 1.46499 * 120.00055 * 90.32922 * 3 2 1 16 16 H 1.09001 * 110.88680 * 10.08713 * 15 3 2 17 17 C 1.55165 * 111.00305 * 246.20891 * 15 3 2 18 18 C 1.54322 * 102.93824 * 277.42404 * 17 15 3 19 19 N 1.47016 * 107.27505 * 337.80962 * 18 17 15 20 20 C 1.36946 * 125.65108 * 178.89472 * 19 18 17 21 21 H 1.07993 * 119.99888 * 180.02562 * 20 19 18 22 22 C 1.38806 * 119.99628 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00091 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99906 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46691 * 90.00045 * 24 22 20 26 26 H 1.48498 * 109.47071 * 210.00059 * 24 22 20 27 27 H 1.48504 * 109.46799 * 330.00495 * 24 22 20 28 28 C 1.47427 * 108.70325 * 358.94024 * 19 18 17 29 29 H 1.09000 * 109.46861 * 59.99406 * 1 2 3 30 30 H 1.08996 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46821 * 300.00321 * 1 2 3 32 32 H 1.09000 * 109.46661 * 120.00078 * 2 1 3 33 33 H 1.08999 * 109.46821 * 239.99679 * 2 1 3 34 34 H 1.08002 * 126.83613 * 0.02562 * 7 6 4 35 35 H 1.07996 * 125.57455 * 180.08292 * 8 7 6 36 36 H 1.08999 * 109.47184 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47028 * 59.99623 * 11 10 9 38 38 H 1.08997 * 109.46824 * 180.02562 * 11 10 9 39 39 H 1.09005 * 109.46776 * 299.99664 * 11 10 9 40 40 H 1.09002 * 109.47085 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.47181 * 300.00070 * 12 10 9 42 42 H 1.09004 * 109.47266 * 60.00034 * 12 10 9 43 43 H 1.08992 * 109.47596 * 270.00290 * 14 13 9 44 44 H 1.08995 * 109.46684 * 30.00977 * 14 13 9 45 45 H 1.09006 * 109.46600 * 150.00414 * 14 13 9 46 46 H 1.08997 * 110.72021 * 35.79106 * 17 15 3 47 47 H 1.09002 * 110.71734 * 159.06198 * 17 15 3 48 48 H 1.09003 * 109.88274 * 97.22475 * 18 17 15 49 49 H 1.09001 * 109.88017 * 218.38871 * 18 17 15 50 50 H 0.97006 * 119.99861 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.36311 * 265.28802 * 28 19 18 52 52 H 1.09001 * 110.36817 * 142.96804 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2367 2.0187 -1.1672 5 8 2.7298 3.1306 -1.1699 6 6 1.8784 1.3691 -2.4393 7 6 1.1420 0.1122 -2.6105 8 6 1.0442 -0.0913 -3.9363 9 7 1.6674 0.9335 -4.5868 10 6 1.7741 1.0592 -6.0425 11 6 2.5206 -0.1519 -6.6057 12 6 0.3726 1.1235 -6.6529 13 6 2.1701 1.8129 -3.6997 14 6 2.9252 3.0725 -4.0380 15 6 2.2695 2.0693 1.2687 16 1 2.2175 1.3728 2.1055 17 6 1.2824 3.2501 1.4657 18 6 1.9370 4.3870 0.6530 19 7 3.3662 4.0666 0.5270 20 6 4.2961 4.8158 -0.1435 21 1 5.3261 4.4931 -0.1784 22 6 3.9145 5.9897 -0.7783 23 7 2.6592 6.3832 -0.7353 24 14 5.1830 7.0121 -1.6924 25 1 5.2545 6.5635 -3.1062 26 1 4.7912 8.4437 -1.6465 27 1 6.5115 6.8415 -1.0511 28 6 3.6326 2.8047 1.2412 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 0.7533 -0.5224 -1.8277 35 1 0.5565 -0.9312 -4.4088 36 1 2.3201 1.9697 -6.2895 37 1 1.9746 -1.0623 -6.3587 38 1 2.6003 -0.0581 -7.6887 39 1 3.5191 -0.1977 -6.1709 40 1 0.4520 1.2166 -7.7360 41 1 -0.1733 0.2130 -6.4059 42 1 -0.1592 1.9862 -6.2517 43 1 3.9907 2.8518 -4.1003 44 1 2.5774 3.4582 -4.9963 45 1 2.7534 3.8186 -3.2621 46 1 0.3004 3.0033 1.0621 47 1 1.2105 3.5210 2.5191 48 1 1.4817 4.4456 -0.3356 49 1 1.8143 5.3351 1.1767 50 1 2.3925 7.2034 -1.1792 51 1 3.9745 3.0081 2.2560 52 1 4.3723 2.2126 0.7023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001033932135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:01 Heat of formation + Delta-G solvation = 109.421053 kcal Electronic energy + Delta-G solvation = -31797.488575 eV Core-core repulsion = 27994.757361 eV Total energy + Delta-G solvation = -3802.731214 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -41.23407 -39.26259 -36.05779 -35.30195 -34.81757 -32.11052 -31.12255 -29.95707 -29.32589 -28.67816 -27.56266 -26.92937 -25.73958 -24.16413 -23.10779 -22.56740 -21.59987 -20.17316 -19.65051 -18.51539 -17.55153 -16.73235 -16.36256 -15.98189 -15.22519 -15.03542 -14.58692 -14.41165 -14.22115 -14.14938 -13.72193 -13.45384 -13.07991 -12.91389 -12.75474 -12.60977 -12.46745 -12.22934 -12.10344 -11.98978 -11.72615 -11.67989 -11.59926 -11.45355 -11.31629 -11.24021 -11.13806 -10.92142 -10.76724 -10.60423 -10.58969 -10.43156 -9.84197 -9.73807 -9.49740 -9.26410 -8.38622 -8.18765 -8.07495 -7.63603 -7.51127 -6.04304 -5.26339 -2.49160 2.41179 2.82478 3.00769 3.59878 3.64892 3.66220 3.88367 4.41557 4.53089 4.71914 4.81440 4.84196 5.00167 5.22127 5.22831 5.29594 5.39127 5.40240 5.41894 5.52316 5.57417 5.67522 5.70901 5.73348 5.78811 5.86488 5.87557 5.89557 5.94383 5.98466 6.08814 6.14092 6.19165 6.26814 6.32999 6.41558 6.46884 6.54893 6.75133 6.81257 6.86377 6.90017 6.98758 7.22894 7.48097 7.63359 7.66713 7.92204 8.07353 8.29113 8.48907 8.71442 9.62626 9.66532 10.28919 10.97028 11.87024 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.005516 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.147482 B = 5074.775228 C = 7111.702376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.098 3.902 3 N -0.608 5.608 4 C 0.533 3.467 5 O -0.413 6.413 6 C -0.214 4.214 7 C -0.197 4.197 8 C -0.029 4.029 9 N -0.441 5.441 10 C 0.120 3.880 11 C -0.159 4.159 12 C -0.161 4.161 13 C 0.098 3.902 14 C -0.096 4.096 15 C 0.136 3.864 16 H 0.076 0.924 17 C -0.160 4.160 18 C 0.194 3.806 19 N -0.562 5.562 20 C -0.176 4.176 21 H 0.064 0.936 22 C -0.009 4.009 23 N -0.922 5.922 24 Si 0.892 3.108 25 H -0.296 1.296 26 H -0.297 1.297 27 H -0.288 1.288 28 C 0.132 3.868 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.153 0.847 36 H 0.099 0.901 37 H 0.062 0.938 38 H 0.071 0.929 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.062 0.938 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.118 0.882 46 H 0.055 0.945 47 H 0.056 0.944 48 H 0.057 0.943 49 H 0.026 0.974 50 H 0.241 0.759 51 H 0.018 0.982 52 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.027 -17.382 -7.667 19.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.026 4.026 3 N -0.345 5.345 4 C 0.319 3.681 5 O -0.280 6.280 6 C -0.224 4.224 7 C -0.221 4.221 8 C -0.155 4.155 9 N -0.119 5.119 10 C 0.018 3.982 11 C -0.217 4.217 12 C -0.218 4.218 13 C -0.016 4.016 14 C -0.153 4.153 15 C 0.031 3.969 16 H 0.094 0.906 17 C -0.200 4.200 18 C 0.070 3.930 19 N -0.287 5.287 20 C -0.306 4.306 21 H 0.082 0.918 22 C -0.204 4.204 23 N -0.573 5.573 24 Si 0.726 3.274 25 H -0.224 1.224 26 H -0.224 1.224 27 H -0.214 1.214 28 C 0.004 3.996 29 H 0.087 0.913 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.110 0.890 34 H 0.180 0.820 35 H 0.171 0.829 36 H 0.117 0.883 37 H 0.081 0.919 38 H 0.090 0.910 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.081 0.919 42 H 0.083 0.917 43 H 0.087 0.913 44 H 0.069 0.931 45 H 0.137 0.863 46 H 0.074 0.926 47 H 0.075 0.925 48 H 0.075 0.925 49 H 0.044 0.956 50 H 0.052 0.948 51 H 0.036 0.964 52 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -5.690 -16.497 -8.163 19.266 hybrid contribution 0.380 0.197 -0.685 0.807 sum -5.310 -16.300 -8.847 19.292 Atomic orbital electron populations 1.22423 0.97147 1.01088 1.03020 1.21899 0.93641 0.84392 1.02658 1.47583 1.68733 1.12879 1.05317 1.17750 0.81113 0.86944 0.82307 1.91586 1.36388 1.15209 1.84863 1.20542 1.10290 0.98728 0.92820 1.22983 1.05362 0.98625 0.95099 1.21489 1.06171 0.95217 0.92625 1.43766 1.43732 1.19064 1.05313 1.21420 0.97932 1.00687 0.78201 1.22142 1.00954 0.97361 1.01269 1.22151 0.95507 1.03160 1.01031 1.20353 0.99695 0.93470 0.88130 1.20614 0.98207 0.93552 1.02906 1.22218 0.97141 0.93029 0.84494 0.90610 1.23379 0.98195 0.98216 1.00172 1.21047 0.83906 0.91147 0.96929 1.44075 1.04771 1.20981 1.58890 1.18761 0.88436 0.99799 1.23573 0.91818 1.24490 0.95641 0.98543 1.01705 1.69961 1.14321 1.23811 1.49182 0.86375 0.80862 0.79939 0.80254 1.22409 1.22388 1.21407 1.21733 0.93558 0.89245 0.95067 0.91314 0.92589 0.92580 0.92048 0.89046 0.82027 0.82922 0.88304 0.91858 0.90977 0.91765 0.90977 0.91861 0.91666 0.91310 0.93131 0.86328 0.92624 0.92487 0.92519 0.95565 0.94818 0.96426 0.94869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.12 8.72 37.16 0.32 -1.80 16 2 C 0.10 1.31 5.59 -4.04 -0.02 1.29 16 3 N -0.61 -10.90 2.56 -164.99 -0.42 -11.32 16 4 C 0.53 11.21 7.10 -12.59 -0.09 11.12 16 5 O -0.41 -10.46 6.76 5.25 0.04 -10.42 16 6 C -0.21 -3.92 6.05 -103.35 -0.63 -4.54 16 7 C -0.20 -2.81 7.53 -37.50 -0.28 -3.10 16 8 C -0.03 -0.37 10.17 -16.82 -0.17 -0.54 16 9 N -0.44 -5.98 2.57 -105.46 -0.27 -6.25 16 10 C 0.12 1.23 3.45 -67.93 -0.23 0.99 16 11 C -0.16 -1.31 9.23 37.16 0.34 -0.97 16 12 C -0.16 -1.38 9.22 37.16 0.34 -1.03 16 13 C 0.10 1.71 6.89 -81.88 -0.56 1.14 16 14 C -0.10 -1.75 9.43 36.01 0.34 -1.41 16 15 C 0.14 2.54 3.81 -65.78 -0.25 2.29 16 16 H 0.08 1.18 7.84 -51.93 -0.41 0.77 16 17 C -0.16 -3.27 6.52 -24.89 -0.16 -3.43 16 18 C 0.19 5.08 4.22 -3.07 -0.01 5.06 16 19 N -0.56 -15.08 1.73 -170.08 -0.29 -15.38 16 20 C -0.18 -5.18 8.73 -15.06 -0.13 -5.31 16 21 H 0.06 1.86 7.83 -52.49 -0.41 1.45 16 22 C -0.01 -0.28 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -28.57 10.31 55.49 0.57 -28.00 16 24 Si 0.89 23.49 29.55 -169.99 -5.02 18.46 16 25 H -0.30 -7.74 7.11 56.52 0.40 -7.34 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 27 H -0.29 -7.44 7.11 56.52 0.40 -7.04 16 28 C 0.13 2.94 6.18 -2.53 -0.02 2.93 16 29 H 0.07 0.93 6.35 -51.93 -0.33 0.60 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.72 7.89 -51.93 -0.41 0.31 16 33 H 0.09 1.20 4.68 -51.93 -0.24 0.95 16 34 H 0.16 1.97 3.58 -52.49 -0.19 1.78 16 35 H 0.15 1.45 8.06 -52.49 -0.42 1.03 16 36 H 0.10 1.04 6.47 -51.93 -0.34 0.70 16 37 H 0.06 0.48 7.88 -51.93 -0.41 0.08 16 38 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.50 7.88 -51.93 -0.41 0.10 16 42 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.05 0.78 6.96 -51.93 -0.36 0.42 16 45 H 0.12 2.75 6.34 -51.93 -0.33 2.43 16 46 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 47 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 48 H 0.06 1.68 5.85 -51.93 -0.30 1.38 16 49 H 0.03 0.77 7.51 -51.93 -0.39 0.38 16 50 H 0.24 7.37 8.31 -40.82 -0.34 7.03 16 51 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 52 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 LS Contribution 386.10 15.07 5.82 5.82 Total: -1.00 -34.31 386.10 -9.63 -43.94 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -8.74 Total: 0.83 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -1.31 Total: 2.33 kcal Atomic # 7 Polarization: -60.53 SS G_CDS: -0.42 Total: -60.95 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.04 Total: -10.42 kcal Atomic # 14 Polarization: 23.49 SS G_CDS: -5.02 Total: 18.46 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.31 -9.63 -43.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033932135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.358 kcal (2) G-P(sol) polarization free energy of solvation -34.309 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.050 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.937 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds