Wall clock time and date at job start Tue Mar 31 2020 18:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47551 * 2 1 4 4 C 1.34776 * 120.00052 * 270.33359 * 3 2 1 5 5 O 1.21629 * 120.00229 * 185.13228 * 4 3 2 6 6 C 1.47263 * 120.00050 * 5.11873 * 4 3 2 7 7 C 1.46686 * 126.93974 * 7.59178 * 6 4 3 8 8 C 1.34492 * 106.33305 * 179.88264 * 7 6 4 9 9 N 1.36448 * 108.85148 * 0.37596 * 8 7 6 10 10 C 1.46503 * 124.84964 * 179.76941 * 9 8 7 11 11 C 1.53008 * 109.47015 * 299.97914 * 10 9 8 12 12 C 1.52997 * 109.47054 * 59.97395 * 10 9 8 13 13 C 1.34654 * 110.30056 * 359.74710 * 9 8 7 14 14 C 1.50706 * 125.80042 * 180.02562 * 13 9 8 15 15 C 1.46499 * 120.00055 * 90.32922 * 3 2 1 16 16 H 1.09001 * 110.88680 * 10.08713 * 15 3 2 17 17 C 1.55165 * 111.00305 * 246.20891 * 15 3 2 18 18 C 1.54322 * 102.93824 * 277.42404 * 17 15 3 19 19 N 1.47016 * 107.27505 * 337.80962 * 18 17 15 20 20 C 1.36946 * 125.65108 * 178.89472 * 19 18 17 21 21 H 1.07993 * 119.99888 * 180.02562 * 20 19 18 22 22 C 1.38806 * 119.99628 * 0.02562 * 20 19 18 23 23 N 1.31622 * 120.00091 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99906 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46691 * 90.00045 * 24 22 20 26 26 H 1.48498 * 109.47071 * 210.00059 * 24 22 20 27 27 H 1.48504 * 109.46799 * 330.00495 * 24 22 20 28 28 C 1.47427 * 108.70325 * 358.94024 * 19 18 17 29 29 H 1.09000 * 109.46861 * 59.99406 * 1 2 3 30 30 H 1.08996 * 109.47705 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46821 * 300.00321 * 1 2 3 32 32 H 1.09000 * 109.46661 * 120.00078 * 2 1 3 33 33 H 1.08999 * 109.46821 * 239.99679 * 2 1 3 34 34 H 1.08002 * 126.83613 * 0.02562 * 7 6 4 35 35 H 1.07996 * 125.57455 * 180.08292 * 8 7 6 36 36 H 1.08999 * 109.47184 * 179.97438 * 10 9 8 37 37 H 1.08996 * 109.47028 * 59.99623 * 11 10 9 38 38 H 1.08997 * 109.46824 * 180.02562 * 11 10 9 39 39 H 1.09005 * 109.46776 * 299.99664 * 11 10 9 40 40 H 1.09002 * 109.47085 * 180.02562 * 12 10 9 41 41 H 1.08999 * 109.47181 * 300.00070 * 12 10 9 42 42 H 1.09004 * 109.47266 * 60.00034 * 12 10 9 43 43 H 1.08992 * 109.47596 * 270.00290 * 14 13 9 44 44 H 1.08995 * 109.46684 * 30.00977 * 14 13 9 45 45 H 1.09006 * 109.46600 * 150.00414 * 14 13 9 46 46 H 1.08997 * 110.72021 * 35.79106 * 17 15 3 47 47 H 1.09002 * 110.71734 * 159.06198 * 17 15 3 48 48 H 1.09003 * 109.88274 * 97.22475 * 18 17 15 49 49 H 1.09001 * 109.88017 * 218.38871 * 18 17 15 50 50 H 0.97006 * 119.99861 * 180.02562 * 23 22 20 51 51 H 1.09000 * 110.36311 * 265.28802 * 28 19 18 52 52 H 1.09001 * 110.36817 * 142.96804 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2367 2.0187 -1.1672 5 8 2.7298 3.1306 -1.1699 6 6 1.8784 1.3691 -2.4393 7 6 1.1420 0.1122 -2.6105 8 6 1.0442 -0.0913 -3.9363 9 7 1.6674 0.9335 -4.5868 10 6 1.7741 1.0592 -6.0425 11 6 2.5206 -0.1519 -6.6057 12 6 0.3726 1.1235 -6.6529 13 6 2.1701 1.8129 -3.6997 14 6 2.9252 3.0725 -4.0380 15 6 2.2695 2.0693 1.2687 16 1 2.2175 1.3728 2.1055 17 6 1.2824 3.2501 1.4657 18 6 1.9370 4.3870 0.6530 19 7 3.3662 4.0666 0.5270 20 6 4.2961 4.8158 -0.1435 21 1 5.3261 4.4931 -0.1784 22 6 3.9145 5.9897 -0.7783 23 7 2.6592 6.3832 -0.7353 24 14 5.1830 7.0121 -1.6924 25 1 5.2545 6.5635 -3.1062 26 1 4.7912 8.4437 -1.6465 27 1 6.5115 6.8415 -1.0511 28 6 3.6326 2.8047 1.2412 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 0.7533 -0.5224 -1.8277 35 1 0.5565 -0.9312 -4.4088 36 1 2.3201 1.9697 -6.2895 37 1 1.9746 -1.0623 -6.3587 38 1 2.6003 -0.0581 -7.6887 39 1 3.5191 -0.1977 -6.1709 40 1 0.4520 1.2166 -7.7360 41 1 -0.1733 0.2130 -6.4059 42 1 -0.1592 1.9862 -6.2517 43 1 3.9907 2.8518 -4.1003 44 1 2.5774 3.4582 -4.9963 45 1 2.7534 3.8186 -3.2621 46 1 0.3004 3.0033 1.0621 47 1 1.2105 3.5210 2.5191 48 1 1.4817 4.4456 -0.3356 49 1 1.8143 5.3351 1.1767 50 1 2.3925 7.2034 -1.1792 51 1 3.9745 3.0081 2.2560 52 1 4.3723 2.2126 0.7023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001033932135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:00 Heat of formation + Delta-G solvation = 89.946092 kcal Electronic energy + Delta-G solvation = -31798.333073 eV Core-core repulsion = 27994.757361 eV Total energy + Delta-G solvation = -3803.575711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.38533 -40.79330 -37.67212 -36.70686 -35.91139 -34.07408 -32.46641 -31.49610 -30.53675 -30.41147 -28.67197 -28.20540 -27.11418 -26.22320 -24.37904 -23.59087 -22.79001 -21.78841 -21.45002 -19.68522 -18.94906 -18.54557 -17.72950 -17.34027 -16.70765 -16.39245 -16.24388 -15.80912 -15.59661 -15.49813 -15.31175 -14.85861 -14.22057 -14.11539 -13.98426 -13.69607 -13.65634 -13.55813 -13.46851 -13.35304 -13.21372 -13.17533 -12.91668 -12.79711 -12.71122 -12.65990 -12.37086 -12.21557 -12.19966 -12.08551 -11.95774 -11.95432 -11.92233 -11.57021 -11.41904 -11.24832 -10.47014 -9.91583 -9.26217 -9.11574 -8.86778 -8.15885 -7.55079 -4.76642 1.08547 1.42790 1.45381 1.52408 1.72721 1.97308 2.55719 2.64672 3.05633 3.62363 3.65091 3.87986 3.91162 3.98158 4.05991 4.07367 4.14147 4.20593 4.30086 4.37168 4.42619 4.51889 4.57360 4.62904 4.64529 4.66452 4.75002 4.80130 4.82068 4.83761 4.88891 4.92381 5.01626 5.06666 5.07863 5.12349 5.17778 5.21241 5.22382 5.26440 5.26679 5.45017 5.58293 5.60038 5.89959 6.01533 6.10646 6.22745 6.32416 6.48804 6.56859 7.05793 7.40155 8.11050 8.12112 8.77089 9.57200 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010456 B = 0.005516 C = 0.003936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2677.147482 B = 5074.775228 C = 7111.702376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.093 3.907 3 N -0.607 5.607 4 C 0.520 3.480 5 O -0.472 6.472 6 C -0.244 4.244 7 C -0.200 4.200 8 C -0.011 4.011 9 N -0.432 5.432 10 C 0.110 3.890 11 C -0.152 4.152 12 C -0.154 4.154 13 C 0.071 3.929 14 C -0.081 4.081 15 C 0.149 3.851 16 H 0.127 0.873 17 C -0.145 4.145 18 C 0.210 3.790 19 N -0.574 5.574 20 C -0.177 4.177 21 H 0.057 0.943 22 C -0.064 4.064 23 N -0.949 5.949 24 Si 0.950 3.050 25 H -0.296 1.296 26 H -0.300 1.300 27 H -0.276 1.276 28 C 0.127 3.873 29 H 0.048 0.952 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.186 0.814 35 H 0.197 0.803 36 H 0.088 0.912 37 H 0.076 0.924 38 H 0.095 0.905 39 H 0.047 0.953 40 H 0.096 0.904 41 H 0.076 0.924 42 H 0.043 0.957 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.062 0.938 47 H 0.079 0.921 48 H 0.013 0.987 49 H -0.019 1.019 50 H 0.231 0.769 51 H 0.032 0.968 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.088 -21.707 -8.234 24.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.029 4.029 3 N -0.343 5.343 4 C 0.308 3.692 5 O -0.344 6.344 6 C -0.255 4.255 7 C -0.223 4.223 8 C -0.137 4.137 9 N -0.109 5.109 10 C 0.008 3.992 11 C -0.209 4.209 12 C -0.212 4.212 13 C -0.045 4.045 14 C -0.139 4.139 15 C 0.044 3.956 16 H 0.144 0.856 17 C -0.184 4.184 18 C 0.085 3.915 19 N -0.298 5.298 20 C -0.308 4.308 21 H 0.075 0.925 22 C -0.255 4.255 23 N -0.601 5.601 24 Si 0.782 3.218 25 H -0.224 1.224 26 H -0.227 1.227 27 H -0.201 1.201 28 C 0.000 4.000 29 H 0.067 0.933 30 H 0.111 0.889 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.114 0.886 34 H 0.203 0.797 35 H 0.214 0.786 36 H 0.106 0.894 37 H 0.095 0.905 38 H 0.114 0.886 39 H 0.066 0.934 40 H 0.115 0.885 41 H 0.095 0.905 42 H 0.062 0.938 43 H 0.080 0.920 44 H 0.089 0.911 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.098 0.902 48 H 0.031 0.969 49 H -0.001 1.001 50 H 0.040 0.960 51 H 0.049 0.951 52 H 0.039 0.961 Dipole moment (debyes) X Y Z Total from point charges -6.751 -20.903 -8.718 23.633 hybrid contribution 0.714 1.442 -0.568 1.706 sum -6.038 -19.461 -9.285 22.392 Atomic orbital electron populations 1.22333 0.95652 1.03066 1.01793 1.22202 0.94740 0.81657 1.04305 1.47685 1.68000 1.14526 1.04096 1.18343 0.80319 0.86547 0.84011 1.91558 1.39170 1.17647 1.85983 1.20594 1.12143 1.00845 0.91879 1.23165 1.05242 0.97277 0.96652 1.22159 1.04146 0.95169 0.92223 1.43982 1.42387 1.18185 1.06367 1.21756 0.99500 1.01566 0.76328 1.22106 0.99750 0.96582 1.02490 1.22125 0.93901 1.02864 1.02295 1.20148 1.01155 0.93969 0.89223 1.20273 0.98285 0.93453 1.01850 1.22174 0.93642 0.93292 0.86523 0.85572 1.23206 0.98303 0.96658 1.00271 1.20648 0.84181 0.91650 0.95048 1.44207 1.04608 1.22380 1.58627 1.18963 0.88731 0.99927 1.23161 0.92507 1.25129 0.97288 0.99971 1.03128 1.70215 1.16040 1.23675 1.50206 0.85443 0.79279 0.78038 0.78998 1.22441 1.22711 1.20136 1.21927 0.95739 0.87761 0.94579 0.93328 0.88895 0.93069 0.89249 0.88568 0.79730 0.78586 0.89352 0.90480 0.88617 0.93350 0.88537 0.90480 0.93777 0.92017 0.91148 0.91843 0.91892 0.90230 0.96904 1.00104 0.95978 0.95077 0.96142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.41 8.72 71.98 0.63 -2.78 16 2 C 0.09 2.16 5.59 86.38 0.48 2.64 16 3 N -0.61 -21.12 2.56 -794.15 -2.03 -23.15 16 4 C 0.52 22.61 7.10 86.62 0.62 23.23 16 5 O -0.47 -25.56 6.76 -4.12 -0.03 -25.59 16 6 C -0.24 -9.06 6.05 -19.04 -0.12 -9.18 16 7 C -0.20 -5.26 7.53 23.62 0.18 -5.09 16 8 C -0.01 -0.23 10.17 83.12 0.85 0.61 16 9 N -0.43 -11.14 2.57 -487.56 -1.25 -12.39 16 10 C 0.11 2.03 3.45 44.99 0.16 2.19 16 11 C -0.15 -2.01 9.23 71.98 0.66 -1.35 16 12 C -0.15 -2.21 9.22 71.98 0.66 -1.55 16 13 C 0.07 2.56 6.89 41.78 0.29 2.85 16 14 C -0.08 -3.23 9.43 71.24 0.67 -2.56 16 15 C 0.15 5.31 3.81 46.38 0.18 5.48 16 16 H 0.13 3.33 7.84 -2.39 -0.02 3.31 16 17 C -0.15 -5.87 6.52 31.79 0.21 -5.66 16 18 C 0.21 11.61 4.22 86.73 0.37 11.98 16 19 N -0.57 -32.29 1.73 -692.01 -1.20 -33.49 16 20 C -0.18 -11.00 8.73 84.03 0.73 -10.27 16 21 H 0.06 3.50 7.83 -2.91 -0.02 3.47 16 22 C -0.06 -4.01 5.49 84.86 0.47 -3.55 16 23 N -0.95 -63.05 10.31 21.65 0.22 -62.83 16 24 Si 0.95 50.97 29.55 68.60 2.03 53.00 16 25 H -0.30 -15.73 7.11 99.48 0.71 -15.02 16 26 H -0.30 -16.10 7.11 99.48 0.71 -15.39 16 27 H -0.28 -14.09 7.11 99.48 0.71 -13.38 16 28 C 0.13 5.68 6.18 86.85 0.54 6.22 16 29 H 0.05 1.19 6.35 -2.39 -0.02 1.17 16 30 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 32 H 0.09 1.63 7.89 -2.39 -0.02 1.61 16 33 H 0.10 2.19 4.68 -2.39 -0.01 2.18 16 34 H 0.19 3.81 3.58 -2.91 -0.01 3.80 16 35 H 0.20 2.58 8.06 -2.91 -0.02 2.56 16 36 H 0.09 1.81 6.47 -2.39 -0.02 1.79 16 37 H 0.08 0.83 7.88 -2.39 -0.02 0.81 16 38 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 39 H 0.05 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.10 0.93 8.14 -2.39 -0.02 0.91 16 41 H 0.08 0.90 7.88 -2.39 -0.02 0.89 16 42 H 0.04 0.83 8.14 -2.38 -0.02 0.81 16 43 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.36 6.96 -2.39 -0.02 2.34 16 45 H 0.06 3.28 6.34 -2.38 -0.02 3.26 16 46 H 0.06 2.45 8.14 -2.39 -0.02 2.43 16 47 H 0.08 2.86 8.14 -2.39 -0.02 2.84 16 48 H 0.01 0.83 5.85 -2.39 -0.01 0.81 16 49 H -0.02 -1.20 7.51 -2.39 -0.02 -1.22 16 50 H 0.23 15.13 8.31 -92.70 -0.77 14.36 16 51 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 52 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -84.54 386.10 6.20 -78.34 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: 0.90 Total: 12.87 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: 7.56 Total: 13.23 kcal Atomic # 7 Polarization: -127.60 SS G_CDS: -4.26 Total: -131.85 kcal Atomic # 8 Polarization: -25.56 SS G_CDS: -0.03 Total: -25.59 kcal Atomic # 14 Polarization: 50.97 SS G_CDS: 2.03 Total: 53.00 kcal Total: -84.54 6.20 -78.34 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001033932135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.289 kcal (2) G-P(sol) polarization free energy of solvation -84.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 83.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.342 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds