Wall clock time and date at job start Tue Mar 31 2020 18:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47058 * 2 1 4 4 C 1.34774 * 120.00057 * 82.09200 * 3 2 1 5 5 O 1.21703 * 120.00047 * 181.87012 * 4 3 2 6 6 C 1.46679 * 119.99854 * 1.58737 * 4 3 2 7 7 C 1.37878 * 126.23087 * 170.36532 * 6 4 3 8 8 C 1.39838 * 107.08365 * 179.84855 * 7 6 4 9 9 C 1.50703 * 126.06697 * 180.15649 * 8 7 6 10 10 C 1.52997 * 109.46931 * 270.28470 * 9 8 7 11 11 C 1.52999 * 109.47597 * 64.99978 * 10 9 8 12 12 C 1.53005 * 109.47030 * 185.00132 * 10 9 8 13 13 C 1.35450 * 107.86218 * 0.42206 * 8 7 6 14 14 N 1.35528 * 108.87435 * 359.73502 * 13 8 7 15 15 H 0.97009 * 125.67882 * 179.97438 * 14 13 8 16 16 C 1.46498 * 120.00149 * 262.09238 * 3 2 1 17 17 H 1.09003 * 110.88574 * 356.11742 * 16 3 2 18 18 C 1.55154 * 111.00566 * 119.99797 * 16 3 2 19 19 C 1.54329 * 102.94087 * 153.57909 * 18 16 3 20 20 N 1.47015 * 107.27161 * 337.80536 * 19 18 16 21 21 C 1.36942 * 125.64857 * 178.98853 * 20 19 18 22 22 H 1.08000 * 120.00026 * 179.97438 * 21 20 19 23 23 C 1.38804 * 119.99813 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00493 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46764 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47462 * 119.99405 * 25 23 21 28 28 H 1.48505 * 109.46805 * 239.99842 * 25 23 21 29 29 C 1.47425 * 108.70424 * 358.94334 * 20 19 18 30 30 H 1.09003 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99945 * 1 2 3 32 32 H 1.08995 * 109.47437 * 59.99971 * 1 2 3 33 33 H 1.09002 * 109.47291 * 239.99947 * 2 1 3 34 34 H 1.08995 * 109.47437 * 120.00029 * 2 1 3 35 35 H 1.08001 * 126.45411 * 0.02562 * 7 6 4 36 36 H 1.08994 * 109.46931 * 30.28079 * 9 8 7 37 37 H 1.09002 * 109.46701 * 150.28818 * 9 8 7 38 38 H 1.09007 * 109.47390 * 305.00195 * 10 9 8 39 39 H 1.08994 * 109.47497 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47224 * 300.00075 * 11 10 9 41 41 H 1.09002 * 109.46995 * 59.99926 * 11 10 9 42 42 H 1.08999 * 109.46766 * 60.00016 * 12 10 9 43 43 H 1.09002 * 109.46971 * 180.02562 * 12 10 9 44 44 H 1.08993 * 109.46925 * 300.00021 * 12 10 9 45 45 H 1.07996 * 125.56261 * 179.72093 * 13 8 7 46 46 H 1.09000 * 110.72158 * 271.94080 * 18 16 3 47 47 H 1.08997 * 110.72069 * 35.21742 * 18 16 3 48 48 H 1.08995 * 109.88629 * 97.22526 * 19 18 16 49 49 H 1.09000 * 109.87866 * 218.39179 * 19 18 16 50 50 H 0.97003 * 120.00563 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.36553 * 265.28801 * 29 20 19 52 52 H 1.09004 * 110.36781 * 142.96693 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0915 2.0701 1.1561 5 8 2.4649 3.2284 1.1516 6 6 1.7153 1.4257 2.4189 7 6 1.9130 1.9355 3.6845 8 6 1.4033 0.9988 4.5891 9 6 1.3962 1.1280 6.0905 10 6 2.6869 0.5355 6.6595 11 6 3.8813 1.3670 6.1874 12 6 2.6256 0.5531 8.1882 13 6 0.9226 -0.0480 3.8764 14 7 1.1061 0.1991 2.5565 15 1 0.8509 -0.3906 1.8297 16 6 2.4270 2.0137 -1.2566 17 1 2.3724 1.3058 -2.0837 18 6 1.5728 3.2758 -1.5476 19 6 2.5121 4.1352 -2.4200 20 7 3.8871 3.6911 -2.1492 21 6 5.0178 4.1901 -2.7391 22 1 5.9864 3.7950 -2.4705 23 6 4.9189 5.2037 -3.6822 24 7 3.7385 5.6849 -4.0100 25 14 6.4611 5.8840 -4.4874 26 1 7.6523 5.1785 -3.9502 27 1 6.3844 5.6789 -5.9562 28 1 6.5727 7.3358 -4.1954 29 6 3.8474 2.6203 -1.1367 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.3722 2.8816 3.9308 36 1 1.3282 2.1808 6.3642 37 1 0.5395 0.5906 6.4973 38 1 2.7994 -0.4916 6.3121 39 1 4.8008 0.9452 6.5931 40 1 3.9250 1.3545 5.0983 41 1 3.7690 2.3941 6.5347 42 1 1.7748 -0.0393 8.5245 43 1 3.5454 0.1314 8.5936 44 1 2.5133 1.5801 8.5355 45 1 0.4675 -0.9348 4.2921 46 1 0.6697 3.0118 -2.0978 47 1 1.3240 3.7949 -0.6220 48 1 2.2761 3.9890 -3.4740 49 1 2.4036 5.1872 -2.1561 50 1 3.6693 6.3930 -4.6694 51 1 4.0001 3.0346 -0.1402 52 1 4.6022 1.8645 -1.3540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034016152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:49 Heat of formation + Delta-G solvation = 55.646678 kcal Electronic energy + Delta-G solvation = -29779.602172 eV Core-core repulsion = 25974.539126 eV Total energy + Delta-G solvation = -3805.063045 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.73073 -39.53942 -36.74177 -36.63828 -35.70983 -32.57460 -31.45802 -30.49496 -29.70771 -28.86967 -27.30332 -27.14285 -26.22112 -24.43586 -23.93637 -22.12249 -21.19736 -20.28988 -19.98841 -19.89729 -18.96172 -17.48894 -16.84342 -16.31813 -15.62864 -15.19205 -15.05512 -14.54537 -14.52706 -14.37011 -14.11561 -13.77193 -13.61685 -13.53476 -13.26998 -13.08681 -12.79716 -12.76579 -12.35901 -12.21676 -12.10451 -12.06113 -12.04124 -11.71944 -11.64042 -11.47926 -11.08843 -10.92196 -10.85187 -10.81634 -10.75490 -10.66830 -10.30875 -10.01029 -9.88513 -9.59580 -9.20594 -8.81048 -8.57260 -8.38724 -8.12998 -6.68281 -5.61148 -2.93550 1.55144 2.63593 2.95254 3.18161 3.45998 3.51270 3.53215 3.53963 4.41321 4.56800 4.59691 4.72951 4.76353 4.79135 4.86247 4.93232 5.00434 5.22978 5.29978 5.31143 5.39946 5.45105 5.48578 5.50957 5.55256 5.60144 5.65376 5.75785 5.79340 5.81483 5.82162 5.85806 5.90671 5.98030 6.05717 6.14487 6.20531 6.24218 6.29894 6.52110 6.62781 6.65907 6.77022 6.78945 6.93132 7.23789 7.29916 7.58136 7.66907 7.76649 7.92898 8.35266 8.41990 9.32279 9.92674 10.59637 11.50729 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002746 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.023069 B =10195.758773 C =11370.713332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.087 3.913 3 N -0.604 5.604 4 C 0.581 3.419 5 O -0.501 6.501 6 C -0.044 4.044 7 C -0.105 4.105 8 C -0.171 4.171 9 C -0.041 4.041 10 C -0.090 4.090 11 C -0.149 4.149 12 C -0.148 4.148 13 C 0.007 3.993 14 N -0.550 5.550 15 H 0.423 0.577 16 C 0.132 3.868 17 H 0.091 0.909 18 C -0.153 4.153 19 C 0.185 3.815 20 N -0.602 5.602 21 C -0.221 4.221 22 H 0.077 0.923 23 C -0.011 4.011 24 N -0.923 5.923 25 Si 0.911 3.089 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.291 1.291 29 C 0.124 3.876 30 H 0.071 0.929 31 H 0.063 0.937 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.075 0.925 35 H 0.144 0.856 36 H 0.069 0.931 37 H 0.064 0.936 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.063 0.937 41 H 0.053 0.947 42 H 0.052 0.948 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.165 0.835 46 H 0.054 0.946 47 H 0.074 0.926 48 H 0.044 0.956 49 H 0.043 0.957 50 H 0.250 0.750 51 H 0.049 0.951 52 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.378 -17.578 18.684 27.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.037 4.037 3 N -0.337 5.337 4 C 0.370 3.630 5 O -0.375 6.375 6 C -0.156 4.156 7 C -0.131 4.131 8 C -0.178 4.178 9 C -0.079 4.079 10 C -0.109 4.109 11 C -0.206 4.206 12 C -0.205 4.205 13 C -0.129 4.129 14 N -0.156 5.156 15 H 0.272 0.728 16 C 0.029 3.971 17 H 0.109 0.891 18 C -0.192 4.192 19 C 0.060 3.940 20 N -0.328 5.328 21 C -0.349 4.349 22 H 0.095 0.905 23 C -0.207 4.207 24 N -0.571 5.571 25 Si 0.742 3.258 26 H -0.206 1.206 27 H -0.219 1.219 28 H -0.218 1.218 29 C -0.003 4.003 30 H 0.090 0.910 31 H 0.082 0.918 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.162 0.838 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.085 0.915 39 H 0.067 0.933 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.073 0.927 45 H 0.182 0.818 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.062 0.938 49 H 0.061 0.939 50 H 0.061 0.939 51 H 0.067 0.933 52 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -9.137 -16.874 18.313 26.525 hybrid contribution 0.538 -0.052 -0.843 1.002 sum -8.599 -16.926 17.469 25.799 Atomic orbital electron populations 1.22561 0.95882 1.02676 1.04217 1.21909 0.94318 0.84070 1.03453 1.47883 1.65079 1.12962 1.07764 1.17128 0.78396 0.85881 0.81642 1.90905 1.45546 1.15469 1.85587 1.20602 1.10408 0.89088 0.95547 1.21188 1.02290 1.00058 0.89590 1.19369 1.07164 0.95900 0.95370 1.20019 0.96940 1.01356 0.89593 1.21095 0.95277 0.99757 0.94767 1.21879 0.96967 0.99656 1.02148 1.21864 1.01335 1.01743 0.95597 1.21817 1.06749 1.01208 0.83081 1.43499 1.47116 1.16666 1.08307 0.72828 1.22462 0.97203 0.94524 0.82918 0.89058 1.23244 0.98103 0.96487 1.01390 1.21052 0.81731 0.95570 0.95641 1.44323 1.03065 1.39991 1.45461 1.19097 0.85246 1.14378 1.16222 0.90497 1.24791 0.96906 0.99148 0.99861 1.69981 1.21010 1.30261 1.35863 0.86041 0.82133 0.78713 0.78886 1.20564 1.21876 1.21794 1.21916 0.92197 0.91182 0.94977 0.91006 0.91808 0.90457 0.88907 0.90738 0.83780 0.91283 0.91723 0.91500 0.93338 0.91822 0.92830 0.92934 0.92907 0.92705 0.81818 0.92772 0.90743 0.93783 0.93901 0.93921 0.93331 0.95064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.56 8.86 37.16 0.33 -1.23 16 2 C 0.09 0.85 5.68 -4.04 -0.02 0.82 16 3 N -0.60 -9.01 2.58 -165.20 -0.43 -9.44 16 4 C 0.58 9.85 6.85 -12.85 -0.09 9.76 16 5 O -0.50 -10.74 12.94 5.19 0.07 -10.68 16 6 C -0.04 -0.60 6.45 -81.98 -0.53 -1.12 16 7 C -0.10 -1.39 9.25 -39.11 -0.36 -1.75 16 8 C -0.17 -1.77 4.79 -105.02 -0.50 -2.27 16 9 C -0.04 -0.34 5.18 -27.88 -0.14 -0.49 16 10 C -0.09 -0.72 2.91 -90.62 -0.26 -0.98 16 11 C -0.15 -1.38 8.92 37.16 0.33 -1.05 16 12 C -0.15 -0.99 9.19 37.16 0.34 -0.65 16 13 C 0.01 0.06 11.80 -16.91 -0.20 -0.14 16 14 N -0.55 -5.37 4.16 -9.39 -0.04 -5.41 16 15 H 0.42 3.21 3.50 -40.82 -0.14 3.06 16 16 C 0.13 2.43 3.56 -65.78 -0.23 2.19 16 17 H 0.09 1.53 7.76 -51.93 -0.40 1.13 16 18 C -0.15 -3.16 6.33 -24.89 -0.16 -3.31 16 19 C 0.19 4.82 5.37 -3.07 -0.02 4.80 16 20 N -0.60 -16.44 3.39 -170.07 -0.58 -17.02 16 21 C -0.22 -6.49 10.28 -15.06 -0.15 -6.65 16 22 H 0.08 2.19 7.83 -52.49 -0.41 1.78 16 23 C -0.01 -0.33 5.49 -17.43 -0.10 -0.43 16 24 N -0.92 -28.25 10.31 55.49 0.57 -27.68 16 25 Si 0.91 22.97 29.55 -169.99 -5.02 17.95 16 26 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 27 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 28 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 29 C 0.12 2.83 6.58 -2.53 -0.02 2.82 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.57 6.39 -51.93 -0.33 0.24 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.09 0.79 7.78 -51.93 -0.40 0.39 16 34 H 0.07 0.63 5.14 -51.93 -0.27 0.36 16 35 H 0.14 2.01 8.06 -52.49 -0.42 1.59 16 36 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.06 0.70 6.40 -51.93 -0.33 0.37 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.16 0.88 8.06 -52.49 -0.42 0.46 16 46 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 47 H 0.07 1.64 6.19 -51.93 -0.32 1.32 16 48 H 0.04 1.23 7.38 -51.93 -0.38 0.84 16 49 H 0.04 1.26 7.51 -51.93 -0.39 0.87 16 50 H 0.25 7.40 8.31 -40.82 -0.34 7.06 16 51 H 0.05 1.21 5.60 -51.93 -0.29 0.92 16 52 H 0.03 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 395.33 15.07 5.96 5.96 Total: -1.00 -34.80 395.33 -9.99 -44.78 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -8.73 Total: 1.21 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -1.79 Total: 0.32 kcal Atomic # 7 Polarization: -59.07 SS G_CDS: -0.47 Total: -59.54 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.07 Total: -10.68 kcal Atomic # 14 Polarization: 22.97 SS G_CDS: -5.02 Total: 17.95 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.80 -9.99 -44.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034016152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.429 kcal (2) G-P(sol) polarization free energy of solvation -34.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds