Wall clock time and date at job start Tue Mar 31 2020 18:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47058 * 2 1 4 4 C 1.34774 * 120.00057 * 82.09200 * 3 2 1 5 5 O 1.21703 * 120.00047 * 181.87012 * 4 3 2 6 6 C 1.46679 * 119.99854 * 1.58737 * 4 3 2 7 7 C 1.37878 * 126.23087 * 170.36532 * 6 4 3 8 8 C 1.39838 * 107.08365 * 179.84855 * 7 6 4 9 9 C 1.50703 * 126.06697 * 180.15649 * 8 7 6 10 10 C 1.52997 * 109.46931 * 270.28470 * 9 8 7 11 11 C 1.52999 * 109.47597 * 64.99978 * 10 9 8 12 12 C 1.53005 * 109.47030 * 185.00132 * 10 9 8 13 13 C 1.35450 * 107.86218 * 0.42206 * 8 7 6 14 14 N 1.35528 * 108.87435 * 359.73502 * 13 8 7 15 15 H 0.97009 * 125.67882 * 179.97438 * 14 13 8 16 16 C 1.46498 * 120.00149 * 262.09238 * 3 2 1 17 17 H 1.09003 * 110.88574 * 356.11742 * 16 3 2 18 18 C 1.55154 * 111.00566 * 119.99797 * 16 3 2 19 19 C 1.54329 * 102.94087 * 153.57909 * 18 16 3 20 20 N 1.47015 * 107.27161 * 337.80536 * 19 18 16 21 21 C 1.36942 * 125.64857 * 178.98853 * 20 19 18 22 22 H 1.08000 * 120.00026 * 179.97438 * 21 20 19 23 23 C 1.38804 * 119.99813 * 359.97438 * 21 20 19 24 24 N 1.31618 * 120.00493 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 119.99969 * 180.02562 * 23 21 20 26 26 H 1.48499 * 109.46764 * 359.97438 * 25 23 21 27 27 H 1.48496 * 109.47462 * 119.99405 * 25 23 21 28 28 H 1.48505 * 109.46805 * 239.99842 * 25 23 21 29 29 C 1.47425 * 108.70424 * 358.94334 * 20 19 18 30 30 H 1.09003 * 109.46680 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46890 * 299.99945 * 1 2 3 32 32 H 1.08995 * 109.47437 * 59.99971 * 1 2 3 33 33 H 1.09002 * 109.47291 * 239.99947 * 2 1 3 34 34 H 1.08995 * 109.47437 * 120.00029 * 2 1 3 35 35 H 1.08001 * 126.45411 * 0.02562 * 7 6 4 36 36 H 1.08994 * 109.46931 * 30.28079 * 9 8 7 37 37 H 1.09002 * 109.46701 * 150.28818 * 9 8 7 38 38 H 1.09007 * 109.47390 * 305.00195 * 10 9 8 39 39 H 1.08994 * 109.47497 * 179.97438 * 11 10 9 40 40 H 1.09001 * 109.47224 * 300.00075 * 11 10 9 41 41 H 1.09002 * 109.46995 * 59.99926 * 11 10 9 42 42 H 1.08999 * 109.46766 * 60.00016 * 12 10 9 43 43 H 1.09002 * 109.46971 * 180.02562 * 12 10 9 44 44 H 1.08993 * 109.46925 * 300.00021 * 12 10 9 45 45 H 1.07996 * 125.56261 * 179.72093 * 13 8 7 46 46 H 1.09000 * 110.72158 * 271.94080 * 18 16 3 47 47 H 1.08997 * 110.72069 * 35.21742 * 18 16 3 48 48 H 1.08995 * 109.88629 * 97.22526 * 19 18 16 49 49 H 1.09000 * 109.87866 * 218.39179 * 19 18 16 50 50 H 0.97003 * 120.00563 * 180.02562 * 24 23 21 51 51 H 1.09004 * 110.36553 * 265.28801 * 29 20 19 52 52 H 1.09004 * 110.36781 * 142.96693 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.0915 2.0701 1.1561 5 8 2.4649 3.2284 1.1516 6 6 1.7153 1.4257 2.4189 7 6 1.9130 1.9355 3.6845 8 6 1.4033 0.9988 4.5891 9 6 1.3962 1.1280 6.0905 10 6 2.6869 0.5355 6.6595 11 6 3.8813 1.3670 6.1874 12 6 2.6256 0.5531 8.1882 13 6 0.9226 -0.0480 3.8764 14 7 1.1061 0.1991 2.5565 15 1 0.8509 -0.3906 1.8297 16 6 2.4270 2.0137 -1.2566 17 1 2.3724 1.3058 -2.0837 18 6 1.5728 3.2758 -1.5476 19 6 2.5121 4.1352 -2.4200 20 7 3.8871 3.6911 -2.1492 21 6 5.0178 4.1901 -2.7391 22 1 5.9864 3.7950 -2.4705 23 6 4.9189 5.2037 -3.6822 24 7 3.7385 5.6849 -4.0100 25 14 6.4611 5.8840 -4.4874 26 1 7.6523 5.1785 -3.9502 27 1 6.3844 5.6789 -5.9562 28 1 6.5727 7.3358 -4.1954 29 6 3.8474 2.6203 -1.1367 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 1.8934 -0.5138 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 2.3722 2.8816 3.9308 36 1 1.3282 2.1808 6.3642 37 1 0.5395 0.5906 6.4973 38 1 2.7994 -0.4916 6.3121 39 1 4.8008 0.9452 6.5931 40 1 3.9250 1.3545 5.0983 41 1 3.7690 2.3941 6.5347 42 1 1.7748 -0.0393 8.5245 43 1 3.5454 0.1314 8.5936 44 1 2.5133 1.5801 8.5355 45 1 0.4675 -0.9348 4.2921 46 1 0.6697 3.0118 -2.0978 47 1 1.3240 3.7949 -0.6220 48 1 2.2761 3.9890 -3.4740 49 1 2.4036 5.1872 -2.1561 50 1 3.6693 6.3930 -4.6694 51 1 4.0001 3.0346 -0.1402 52 1 4.6022 1.8645 -1.3540 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001034016152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:48 Heat of formation + Delta-G solvation = 35.030234 kcal Electronic energy + Delta-G solvation = -29780.496168 eV Core-core repulsion = 25974.539126 eV Total energy + Delta-G solvation = -3805.957042 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.67343 -40.82715 -38.43378 -37.49881 -36.81656 -34.45187 -32.60356 -31.50749 -31.09576 -30.43176 -28.76455 -27.89171 -27.22296 -26.35514 -24.87471 -23.26487 -22.33044 -22.02623 -21.18954 -20.89274 -19.87467 -18.96398 -18.51143 -17.47456 -17.00176 -16.67997 -16.29550 -15.85211 -15.76038 -15.42210 -15.22510 -15.02590 -14.65794 -14.48621 -14.36659 -14.28419 -14.14864 -13.82939 -13.69816 -13.53099 -13.45691 -13.03049 -13.01783 -12.85084 -12.81123 -12.75050 -12.33188 -12.31428 -12.29311 -12.11266 -12.00130 -11.86431 -11.74307 -11.59193 -11.58425 -11.38482 -10.75185 -10.72433 -9.87230 -9.60510 -9.00586 -8.88812 -7.86968 -5.23309 0.52042 1.42337 1.45329 1.55478 1.79786 1.80312 2.29232 2.40201 2.48584 3.30057 3.49621 3.66928 3.77966 3.86326 4.01730 4.07624 4.11234 4.12964 4.19483 4.24195 4.30371 4.36839 4.46728 4.52989 4.55510 4.66423 4.73846 4.76270 4.83705 4.86691 4.91076 4.92950 4.98086 5.04185 5.08224 5.14920 5.18245 5.20340 5.26202 5.35382 5.38956 5.39718 5.54657 5.60355 5.62072 5.63727 5.71137 5.88823 6.00235 6.16154 6.39552 6.60451 7.06652 7.16200 7.73376 8.39435 9.23889 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016332 B = 0.002746 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.023069 B =10195.758773 C =11370.713332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.078 3.922 3 N -0.599 5.599 4 C 0.575 3.425 5 O -0.564 6.564 6 C -0.072 4.072 7 C -0.119 4.119 8 C -0.184 4.184 9 C -0.038 4.038 10 C -0.086 4.086 11 C -0.150 4.150 12 C -0.145 4.145 13 C 0.039 3.961 14 N -0.532 5.532 15 H 0.435 0.565 16 C 0.154 3.846 17 H 0.120 0.880 18 C -0.137 4.137 19 C 0.196 3.804 20 N -0.622 5.622 21 C -0.243 4.243 22 H 0.080 0.920 23 C -0.069 4.069 24 N -0.953 5.953 25 Si 0.984 3.016 26 H -0.266 1.266 27 H -0.285 1.285 28 H -0.294 1.294 29 C 0.120 3.880 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.057 0.943 37 H 0.089 0.911 38 H 0.074 0.926 39 H 0.052 0.948 40 H 0.041 0.959 41 H 0.046 0.954 42 H 0.067 0.933 43 H 0.054 0.946 44 H 0.050 0.950 45 H 0.214 0.786 46 H 0.085 0.915 47 H 0.056 0.944 48 H 0.022 0.978 49 H -0.006 1.006 50 H 0.248 0.752 51 H 0.025 0.975 52 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.575 -21.790 19.889 31.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.044 4.044 3 N -0.331 5.331 4 C 0.367 3.633 5 O -0.443 6.443 6 C -0.185 4.185 7 C -0.146 4.146 8 C -0.190 4.190 9 C -0.076 4.076 10 C -0.104 4.104 11 C -0.207 4.207 12 C -0.202 4.202 13 C -0.098 4.098 14 N -0.140 5.140 15 H 0.286 0.714 16 C 0.049 3.951 17 H 0.138 0.862 18 C -0.176 4.176 19 C 0.070 3.930 20 N -0.349 5.349 21 C -0.372 4.372 22 H 0.098 0.902 23 C -0.262 4.262 24 N -0.602 5.602 25 Si 0.812 3.188 26 H -0.190 1.190 27 H -0.212 1.212 28 H -0.221 1.221 29 C -0.006 4.006 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.132 0.868 34 H 0.110 0.890 35 H 0.137 0.863 36 H 0.076 0.924 37 H 0.108 0.892 38 H 0.092 0.908 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.065 0.935 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.069 0.931 45 H 0.230 0.770 46 H 0.104 0.896 47 H 0.074 0.926 48 H 0.040 0.960 49 H 0.012 0.988 50 H 0.057 0.943 51 H 0.043 0.957 52 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -10.355 -21.170 19.524 30.604 hybrid contribution 0.911 1.233 -1.095 1.884 sum -9.444 -19.937 18.429 28.745 Atomic orbital electron populations 1.22528 0.94051 1.05011 1.03162 1.22328 0.95740 0.80906 1.05417 1.47882 1.64523 1.14856 1.05817 1.17631 0.77351 0.85328 0.83038 1.90870 1.48551 1.18295 1.86607 1.20037 1.13408 0.91202 0.93843 1.21233 1.02609 1.00010 0.90795 1.19598 1.07423 0.95727 0.96244 1.20048 0.98028 1.01213 0.88313 1.21065 0.94147 0.99524 0.95678 1.21879 0.98321 0.99854 1.00656 1.21834 1.02129 1.01874 0.94408 1.22552 1.03686 1.01478 0.82037 1.43409 1.46003 1.15194 1.09366 0.71368 1.22091 0.93337 0.94228 0.85405 0.86233 1.23014 0.98275 0.96631 0.99715 1.20766 0.82848 0.94068 0.95304 1.44633 1.03008 1.41235 1.46004 1.19492 0.86240 1.14911 1.16513 0.90222 1.25728 1.00280 0.99496 1.00661 1.70212 1.23188 1.30548 1.36251 0.84931 0.78642 0.77462 0.77803 1.18999 1.21156 1.22073 1.21992 0.95687 0.90364 0.92549 0.86871 0.92825 0.91636 0.86816 0.88953 0.86334 0.92401 0.89218 0.90780 0.92892 0.94036 0.93518 0.91419 0.92708 0.93091 0.76981 0.89649 0.92562 0.96002 0.98805 0.94316 0.95728 0.94181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.29 8.86 71.98 0.64 -1.65 16 2 C 0.08 1.25 5.68 86.38 0.49 1.74 16 3 N -0.60 -17.38 2.58 -794.79 -2.05 -19.43 16 4 C 0.58 20.08 6.85 86.45 0.59 20.68 16 5 O -0.56 -26.11 12.94 -4.36 -0.06 -26.17 16 6 C -0.07 -1.96 6.45 40.35 0.26 -1.69 16 7 C -0.12 -3.24 9.25 22.57 0.21 -3.03 16 8 C -0.18 -3.44 4.79 -20.12 -0.10 -3.54 16 9 C -0.04 -0.55 5.18 29.85 0.15 -0.40 16 10 C -0.09 -1.19 2.91 -10.79 -0.03 -1.22 16 11 C -0.15 -2.79 8.92 71.98 0.64 -2.15 16 12 C -0.15 -1.60 9.19 71.98 0.66 -0.94 16 13 C 0.04 0.52 11.80 83.48 0.99 1.50 16 14 N -0.53 -8.70 4.16 -183.63 -0.76 -9.46 16 15 H 0.43 4.71 3.50 -92.70 -0.32 4.38 16 16 C 0.15 5.61 3.56 46.38 0.16 5.78 16 17 H 0.12 3.74 7.76 -2.39 -0.02 3.72 16 18 C -0.14 -5.82 6.33 31.78 0.20 -5.62 16 19 C 0.20 10.77 5.37 86.73 0.47 11.24 16 20 N -0.62 -35.55 3.39 -691.99 -2.35 -37.90 16 21 C -0.24 -14.76 10.28 84.03 0.86 -13.90 16 22 H 0.08 4.65 7.83 -2.91 -0.02 4.63 16 23 C -0.07 -4.19 5.49 84.86 0.47 -3.73 16 24 N -0.95 -60.86 10.31 21.65 0.22 -60.64 16 25 Si 0.98 48.39 29.55 68.60 2.03 50.41 16 26 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 27 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 28 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 29 C 0.12 5.67 6.58 86.85 0.57 6.24 16 30 H 0.11 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.78 6.39 -2.39 -0.02 0.77 16 32 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.11 1.43 7.78 -2.39 -0.02 1.41 16 34 H 0.09 1.18 5.14 -2.39 -0.01 1.17 16 35 H 0.12 3.72 8.06 -2.91 -0.02 3.70 16 36 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.87 8.14 -2.39 -0.02 0.86 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.04 0.95 6.40 -2.39 -0.02 0.93 16 41 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 42 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 43 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 44 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 45 H 0.21 0.79 8.06 -2.91 -0.02 0.76 16 46 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 47 H 0.06 2.61 6.19 -2.39 -0.01 2.60 16 48 H 0.02 1.28 7.38 -2.39 -0.02 1.26 16 49 H -0.01 -0.40 7.51 -2.39 -0.02 -0.42 16 50 H 0.25 15.20 8.31 -92.71 -0.77 14.43 16 51 H 0.02 1.31 5.60 -2.39 -0.01 1.30 16 52 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 Total: -1.00 -83.94 395.33 4.84 -79.09 By element: Atomic # 1 Polarization: 14.19 SS G_CDS: 0.58 Total: 14.77 kcal Atomic # 6 Polarization: 2.08 SS G_CDS: 7.24 Total: 9.32 kcal Atomic # 7 Polarization: -122.48 SS G_CDS: -4.94 Total: -127.43 kcal Atomic # 8 Polarization: -26.11 SS G_CDS: -0.06 Total: -26.17 kcal Atomic # 14 Polarization: 48.39 SS G_CDS: 2.03 Total: 50.41 kcal Total: -83.94 4.84 -79.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034016152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.124 kcal (2) G-P(sol) polarization free energy of solvation -83.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds