Wall clock time and date at job start Tue Mar 31 2020 18:32:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46900 * 109.46878 * 246.32427 * 3 2 1 5 5 C 1.46849 * 111.00032 * 294.21315 * 4 3 2 6 6 C 1.53039 * 109.52506 * 174.16162 * 5 4 3 7 7 C 1.53122 * 109.27942 * 59.17795 * 6 5 4 8 8 C 1.50697 * 109.52414 * 182.43864 * 7 6 5 9 9 O 1.21284 * 119.99553 * 97.57361 * 8 7 6 10 10 N 1.34772 * 120.00283 * 277.57873 * 8 7 6 11 11 C 1.46499 * 119.99886 * 186.21217 * 10 8 7 12 12 C 1.52997 * 109.47132 * 84.35208 * 11 10 8 13 13 C 1.46493 * 119.99813 * 6.21191 * 10 8 7 14 14 H 1.08994 * 110.89494 * 357.97447 * 13 10 8 15 15 C 1.55162 * 111.00398 * 121.85536 * 13 10 8 16 16 C 1.54323 * 102.94576 * 153.57467 * 15 13 10 17 17 N 1.47025 * 107.26919 * 337.80699 * 16 15 13 18 18 C 1.36939 * 125.64745 * 178.97165 * 17 16 15 19 19 H 1.08006 * 119.99767 * 179.97438 * 18 17 16 20 20 C 1.38812 * 120.00150 * 359.97438 * 18 17 16 21 21 N 1.31616 * 120.00010 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 120.00140 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47009 * 89.99575 * 22 20 18 24 24 H 1.48493 * 109.47161 * 210.00010 * 22 20 18 25 25 H 1.48508 * 109.47017 * 329.99913 * 22 20 18 26 26 C 1.47465 * 108.72354 * 358.97532 * 17 16 15 27 27 C 1.53120 * 109.16031 * 302.35031 * 7 6 5 28 28 C 1.46848 * 111.00318 * 170.00426 * 4 3 2 29 29 H 4.40887 * 5.52079 * 179.97438 * 4 1 2 30 30 H 1.09000 * 109.47515 * 6.32354 * 3 2 1 31 31 H 1.09005 * 109.46684 * 126.33164 * 3 2 1 32 32 H 1.09006 * 109.46681 * 294.17780 * 5 4 3 33 33 H 1.08996 * 109.46353 * 54.14414 * 5 4 3 34 34 H 1.09000 * 109.50142 * 299.23546 * 6 5 4 35 35 H 1.08997 * 109.50200 * 179.11855 * 6 5 4 36 36 H 1.08999 * 109.51808 * 62.24806 * 7 6 5 37 37 H 1.09004 * 109.47125 * 204.34913 * 11 10 8 38 38 H 1.08997 * 109.47342 * 324.35252 * 11 10 8 39 39 H 1.09000 * 109.47405 * 64.85555 * 12 11 10 40 40 H 1.08991 * 109.47448 * 184.85805 * 12 11 10 41 41 H 1.09003 * 109.47125 * 304.85839 * 12 11 10 42 42 H 1.08997 * 110.72022 * 271.94061 * 15 13 10 43 43 H 1.08999 * 110.71957 * 35.03208 * 15 13 10 44 44 H 1.09000 * 109.88617 * 97.22231 * 16 15 13 45 45 H 1.09003 * 109.88565 * 218.24127 * 16 15 13 46 46 H 0.96990 * 120.00246 * 180.02562 * 21 20 18 47 47 H 1.08997 * 110.35149 * 265.24957 * 26 17 16 48 48 H 1.08999 * 110.40566 * 142.91505 * 26 17 16 49 49 H 1.09001 * 109.49848 * 297.70900 * 27 7 6 50 50 H 1.09000 * 109.53367 * 177.61350 * 27 7 6 51 51 H 1.09003 * 109.45936 * 305.85941 * 28 4 3 52 52 H 1.09008 * 109.46116 * 65.83221 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1354 0.5570 1.2684 5 6 2.7800 1.9765 1.3924 6 6 3.1754 2.4833 2.7812 7 6 4.6824 2.2962 2.9776 8 6 5.0681 2.7381 4.3657 9 8 5.1894 1.9184 5.2513 10 7 5.2782 4.0443 4.6231 11 6 5.7843 4.4604 5.9334 12 6 7.3100 4.3480 5.9500 13 6 5.0005 5.0478 3.5926 14 1 4.6660 4.5747 2.6695 15 6 3.9620 6.0863 4.0932 16 6 4.2992 7.3412 3.2608 17 7 5.6918 7.2045 2.8096 18 6 6.3685 8.1007 2.0259 19 1 7.3943 7.9082 1.7479 20 6 5.7361 9.2564 1.5887 21 7 4.4859 9.4907 1.9270 22 14 6.6593 10.4793 0.5202 23 1 6.4674 10.1302 -0.9104 24 1 6.1384 11.8472 0.7702 25 1 8.1062 10.4323 0.8513 26 6 6.2397 5.9426 3.3406 27 6 5.0330 0.8168 2.7955 28 6 4.5838 0.3583 1.4064 29 1 -1.0501 0.0001 -0.0003 30 1 3.0099 -1.0206 -0.1132 31 1 3.0090 0.6097 -0.8279 32 1 3.3089 2.5511 0.6319 33 1 1.7053 2.0952 1.2549 34 1 2.6363 1.9185 3.5418 35 1 2.9257 3.5408 2.8673 36 1 5.2223 2.8917 2.2415 37 1 5.4941 5.4938 6.1235 38 1 5.3641 3.8169 6.7063 39 1 7.7343 5.0547 5.2369 40 1 7.6802 4.5744 6.9499 41 1 7.6027 3.3346 5.6751 42 1 2.9470 5.7473 3.8860 43 1 4.0925 6.2798 5.1579 44 1 3.6349 7.4040 2.3989 45 1 4.1927 8.2343 3.8767 46 1 4.0439 10.2981 1.6213 47 1 6.7729 6.1237 4.2738 48 1 6.9008 5.4777 2.6092 49 1 4.5232 0.2258 3.5564 50 1 6.1105 0.6831 2.8922 51 1 4.8191 -0.6983 1.2788 52 1 5.1043 0.9407 0.6459 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001034045837.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:05 Heat of formation + Delta-G solvation = 53.567024 kcal Electronic energy + Delta-G solvation = -30211.606264 eV Core-core repulsion = 26406.453038 eV Total energy + Delta-G solvation = -3805.153226 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.52311 -38.79617 -37.51292 -34.97290 -34.66204 -32.53931 -32.12838 -31.01295 -30.56233 -29.12518 -27.50707 -27.24240 -24.58837 -24.27136 -23.33904 -22.61709 -20.86811 -20.18240 -20.02278 -18.50737 -18.32972 -17.36817 -16.95385 -16.24635 -15.75634 -15.43743 -15.02253 -14.79478 -14.68910 -14.46178 -14.10902 -13.90286 -13.48288 -13.38455 -13.22030 -13.06116 -12.85844 -12.53246 -12.44713 -12.23175 -12.07870 -11.93678 -11.72747 -11.53643 -11.22630 -11.04113 -10.91532 -10.89100 -10.84153 -10.68815 -10.63679 -10.51999 -10.30862 -10.30129 -10.14328 -9.93689 -9.77694 -9.39331 -8.68110 -8.58505 -8.35798 -6.91164 -5.78190 -3.12549 2.50939 2.67579 2.77828 3.16162 3.35648 3.41347 3.42912 3.82194 4.20018 4.40386 4.49463 4.67541 4.72149 4.98193 5.02807 5.14015 5.16647 5.21095 5.23475 5.29378 5.32008 5.42694 5.44318 5.47858 5.50457 5.55910 5.61828 5.64687 5.69199 5.70450 5.74834 5.82824 5.88628 5.90484 6.06825 6.09441 6.14594 6.23379 6.28620 6.36245 6.40934 6.50907 6.72921 6.76842 6.84358 6.84684 7.44762 7.48063 7.51308 7.64666 7.75481 8.17366 8.36869 9.14285 9.74255 10.38690 11.33189 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010190 B = 0.003505 C = 0.002874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2747.102396 B = 7985.687492 C = 9740.953019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.179 4.179 3 C 0.161 3.839 4 N -0.536 5.536 5 C 0.057 3.943 6 C -0.106 4.106 7 C -0.110 4.110 8 C 0.523 3.477 9 O -0.548 6.548 10 N -0.596 5.596 11 C 0.111 3.889 12 C -0.170 4.170 13 C 0.114 3.886 14 H 0.100 0.900 15 C -0.154 4.154 16 C 0.180 3.820 17 N -0.603 5.603 18 C -0.230 4.230 19 H 0.078 0.922 20 C -0.006 4.006 21 N -0.921 5.921 22 Si 0.912 3.088 23 H -0.288 1.288 24 H -0.290 1.290 25 H -0.281 1.281 26 C 0.126 3.874 27 C -0.096 4.096 28 C 0.057 3.943 29 H 0.217 0.783 30 H 0.097 0.903 31 H 0.059 0.941 32 H 0.041 0.959 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.092 0.908 37 H 0.081 0.919 38 H 0.076 0.924 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.063 0.937 43 H 0.063 0.937 44 H 0.049 0.951 45 H 0.045 0.955 46 H 0.253 0.747 47 H 0.032 0.968 48 H 0.039 0.961 49 H 0.083 0.917 50 H 0.071 0.929 51 H 0.080 0.920 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -17.061 0.038 17.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.179 4.179 3 C 0.035 3.965 4 N -0.261 5.261 5 C -0.070 4.070 6 C -0.144 4.144 7 C -0.132 4.132 8 C 0.311 3.689 9 O -0.426 6.426 10 N -0.328 5.328 11 C -0.012 4.012 12 C -0.228 4.228 13 C 0.010 3.990 14 H 0.118 0.882 15 C -0.193 4.193 16 C 0.055 3.945 17 N -0.330 5.330 18 C -0.358 4.358 19 H 0.096 0.904 20 C -0.202 4.202 21 N -0.568 5.568 22 Si 0.742 3.258 23 H -0.216 1.216 24 H -0.216 1.216 25 H -0.207 1.207 26 C -0.001 4.001 27 C -0.134 4.134 28 C -0.071 4.071 29 H 0.233 0.767 30 H 0.115 0.885 31 H 0.077 0.923 32 H 0.059 0.941 33 H 0.098 0.902 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.110 0.890 37 H 0.100 0.900 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.081 0.919 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.057 0.943 49 H 0.102 0.898 50 H 0.090 0.910 51 H 0.098 0.902 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -3.158 -17.512 0.802 17.813 hybrid contribution 0.615 1.339 -1.286 1.956 sum -2.544 -16.173 -0.484 16.379 Atomic orbital electron populations 1.24895 0.95904 1.00918 0.99993 1.22823 0.94186 1.00386 1.00542 1.18989 0.85253 1.01074 0.91192 1.61914 1.14289 1.17194 1.32718 1.22115 1.01301 0.86904 0.96714 1.21582 0.93389 1.01903 0.97489 1.21419 0.98308 0.98437 0.95019 1.20502 0.76312 0.81824 0.90235 1.90646 1.52409 1.52150 1.47395 1.47998 1.64267 1.06003 1.14502 1.21347 0.94206 1.00953 0.84649 1.22265 0.96034 1.02339 1.02154 1.22625 0.97730 0.88448 0.90206 0.88235 1.23281 0.97743 0.97641 1.00657 1.21138 0.85855 0.91824 0.95725 1.44395 1.10179 1.19356 1.59064 1.19034 0.95420 0.98423 1.22944 0.90426 1.24793 0.96382 0.98289 1.00745 1.69942 1.10615 1.27152 1.49107 0.86126 0.78796 0.80681 0.80191 1.21570 1.21636 1.20679 1.21943 0.93476 0.87477 0.97242 1.21409 1.01239 0.93951 0.96772 1.22128 0.86422 1.01291 0.97209 0.76657 0.88481 0.92317 0.94097 0.90181 0.90441 0.90337 0.88963 0.90027 0.90588 0.91523 0.92037 0.92667 0.91874 0.91830 0.93313 0.93674 0.93677 0.95079 0.94254 0.89788 0.91039 0.90168 0.94333 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.86 19.25 29.55 0.57 -1.29 16 2 C -0.18 -1.86 12.34 -37.12 -0.46 -2.32 16 3 C 0.16 1.47 5.46 -6.61 -0.04 1.43 16 4 N -0.54 -5.61 4.63 -238.17 -1.10 -6.71 16 5 C 0.06 0.63 5.30 -3.83 -0.02 0.61 16 6 C -0.11 -1.26 5.10 -26.65 -0.14 -1.40 16 7 C -0.11 -1.38 1.71 -91.65 -0.16 -1.54 16 8 C 0.52 7.87 6.77 -10.99 -0.07 7.79 16 9 O -0.55 -9.64 15.65 5.55 0.09 -9.56 16 10 N -0.60 -8.88 2.53 -163.68 -0.41 -9.29 16 11 C 0.11 1.57 5.21 -4.04 -0.02 1.55 16 12 C -0.17 -2.25 9.95 37.16 0.37 -1.88 16 13 C 0.11 1.85 2.74 -65.78 -0.18 1.67 16 14 H 0.10 1.55 4.81 -51.93 -0.25 1.30 16 15 C -0.15 -2.67 6.49 -24.89 -0.16 -2.83 16 16 C 0.18 4.08 5.37 -3.06 -0.02 4.06 16 17 N -0.60 -14.49 3.40 -170.03 -0.58 -15.07 16 18 C -0.23 -6.14 10.28 -15.06 -0.15 -6.30 16 19 H 0.08 2.01 7.83 -52.48 -0.41 1.60 16 20 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 21 N -0.92 -26.05 10.31 55.49 0.57 -25.48 16 22 Si 0.91 21.46 29.55 -169.99 -5.02 16.43 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 26 C 0.13 2.42 6.52 -2.50 -0.02 2.40 16 27 C -0.10 -1.08 4.92 -26.65 -0.13 -1.21 16 28 C 0.06 0.54 5.46 -3.84 -0.02 0.52 16 29 H 0.22 1.31 7.80 -54.08 -0.42 0.89 16 30 H 0.10 0.72 7.99 -51.93 -0.41 0.31 16 31 H 0.06 0.49 8.12 -51.93 -0.42 0.07 16 32 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.08 0.90 7.11 -51.93 -0.37 0.54 16 34 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.08 0.97 6.83 -51.93 -0.35 0.61 16 36 H 0.09 1.15 6.79 -51.93 -0.35 0.80 16 37 H 0.08 1.15 6.32 -51.93 -0.33 0.82 16 38 H 0.08 1.09 7.52 -51.93 -0.39 0.70 16 39 H 0.07 0.94 5.85 -51.93 -0.30 0.64 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 43 H 0.06 1.06 6.34 -51.93 -0.33 0.73 16 44 H 0.05 1.23 7.38 -51.93 -0.38 0.84 16 45 H 0.05 1.15 7.51 -51.93 -0.39 0.76 16 46 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 47 H 0.03 0.60 5.05 -51.93 -0.26 0.34 16 48 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 49 H 0.08 1.08 7.80 -51.93 -0.41 0.68 16 50 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 51 H 0.08 0.64 8.02 -51.93 -0.42 0.22 16 52 H 0.04 0.35 8.14 -51.92 -0.42 -0.07 16 LS Contribution 398.27 15.07 6.00 6.00 Total: -1.00 -30.78 398.27 -9.92 -40.70 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -8.72 Total: 1.96 kcal Atomic # 6 Polarization: 1.76 SS G_CDS: -0.74 Total: 1.02 kcal Atomic # 7 Polarization: -55.03 SS G_CDS: -1.52 Total: -56.55 kcal Atomic # 8 Polarization: -9.64 SS G_CDS: 0.09 Total: -9.56 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.78 -9.92 -40.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001034045837.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.265 kcal (2) G-P(sol) polarization free energy of solvation -30.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.698 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds